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Relevance to Autism

Koolen-De Vries syndrome (OMIM 610443), also known as 17q21.31 microdeletion syndrome, is a clinically heterogeneous disorder characterized by developmental delay, intellectual disability, hypotonia, and characteristic facial dysmorphism that is caused either by a truncating variant in the KANSL1 gene or a 17q21.31 microdeletion encompassing the KANSL1 gene. Koolen et al., 2016 described a novel cohort of 45 individuals with Koolen-De Vries syndrome and observed behavioral problems, including autism or autistic traits, in 57% of cases. A de novo missense variant in the KANSL1 gene was also identified in an ASD proband from the Simons Simplex Collection (Iossifov et al., 2014).

Molecular Function

This gene encodes a nuclear protein that is a subunit of two protein complexes involved with histone acetylation, the MLL1 complex and the NSL1 complex. The corresponding protein in Drosophila interacts with K(lysine) acetyltransferase 8, which is also a subunit of both the MLL1 and NSL1 complexes.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
The Koolen-de Vries syndrome: a phenotypic comparison of patients with a 17q21.31 microdeletion versus a KANSL1 sequence variant.
Koolen-De Vries syndrome
ASD or autistic features
Support
Large-scale targeted sequencing identifies risk genes for neurodevelopmental disorders
ASD, DD
Support
Mutational Landscape of Autism Spectrum Disorder Brain Tissue
ASD
Support
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Kansl1 haploinsufficiency impairs autophagosome-lysosome fusion and links autophagic dysfunction with Koolen-de Vries syndrome in mice
Koolen-De Vries syndrome
Support
Rare variants in the outcome of social skills group training for autism
ASD
Support
Koolen-de Vries syndrome
Support
A single center experience with publicly funded clinical exome sequencing for neurodevelopmental disorders or multiple congenital anomalies
DD, ID
ADHD, epilepsy/seizures
Support
ID, epilepsy/seizures
Support
A convergent molecular network underlying autism and congenital heart disease
ASD, congenital heart disease
Support
BPD, anxiety disorder, ID
Support
Exome Sequencing in 200 Intellectual Disability/Autistic Patients: New Candidates and Atypical Presentations
ID
DD, epilepsy/seizures
Support
2022
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1136R001 
 missense_variant 
 c.729A>C 
 p.Gln243His 
 De novo 
  
 Simplex 
 GEN1136R002 
 missense_variant 
 c.1775G>A 
 p.Arg592Gln 
 De novo 
  
  
 GEN1136R003 
 stop_gained 
 c.727C>T 
 p.Gln243Ter 
 Unknown 
  
  
 GEN1136R004 
 stop_gained 
 c.727C>T 
 p.Gln243Ter 
 Unknown 
  
  
 GEN1136R005 
 stop_gained 
 c.190C>T 
 p.Arg64Ter 
 Unknown 
  
  
 GEN1136R006 
 missense_variant 
 c.3019C>T 
 p.Arg1007Trp 
 Familial 
 Paternal 
  
 GEN1136R007 
 missense_variant 
 c.2861G>A 
 p.Arg954Gln 
 Unknown 
  
  
 GEN1136R008 
 missense_variant 
 c.3221G>A 
 p.Arg1074Gln 
 Unknown 
  
 Simplex 
 GEN1136R009 
 missense_variant 
 c.1871G>A 
 p.Arg624His 
 Unknown 
  
  
 GEN1136R010 
 missense_variant 
 c.1421G>A 
 p.Arg474His 
 Unknown 
  
  
 GEN1136R011 
 missense_variant 
 c.3301C>T 
 p.Arg1101Cys 
 Unknown 
  
  
 GEN1136R012 
 frameshift_variant 
 c.985_986del 
 p.Leu329GlufsTer22 
 Unknown 
  
  
 GEN1136R013 
 frameshift_variant 
 c.3291dup 
 p.Thr1098HisfsTer20 
 Unknown 
  
  
 GEN1136R014 
 frameshift_variant 
 c.1639_1646del 
 p.Gly547Ter 
 Unknown 
  
  
 GEN1136R015 
 frameshift_variant 
 c.238dup 
 p.Ala80GlyfsTer7 
 Unknown 
  
  
 GEN1136R016 
 stop_gained 
 c.868C>T 
 p.Arg290Ter 
 Unknown 
  
  
 GEN1136R017 
 stop_gained 
 c.190C>T 
 p.Arg64Ter 
 Unknown 
  
  
 GEN1136R018 
 stop_gained 
 c.190C>T 
 p.Arg64Ter 
 Unknown 
  
  
 GEN1136R019 
 missense_variant 
 c.56G>A 
 p.Arg19Gln 
 Unknown 
  
  
 GEN1136R020 
 missense_variant 
 c.56G>A 
 p.Arg19Gln 
 Unknown 
  
  
 GEN1136R021 
 missense_variant 
 c.3056G>A 
 p.Arg1019His 
 Unknown 
  
  
 GEN1136R022 
 missense_variant 
 c.1855C>T 
 p.Arg619Trp 
 Unknown 
  
  
 GEN1136R023 
 missense_variant 
 c.895C>T 
 p.Arg299Cys 
 Unknown 
  
  
 GEN1136R024 
 missense_variant 
 c.3185G>A 
 p.Arg1062His 
 Unknown 
  
  
 GEN1136R025 
 frameshift_variant 
 c.985_986del 
 p.Leu329GlufsTer22 
 De novo 
  
  
 GEN1136R026 
 frameshift_variant 
 c.502_503insGTTCTGATCAT 
 p.Ser168CysfsTer38 
 De novo 
  
 Simplex 
 GEN1136R027 
 missense_variant 
 c.1420C>T 
 p.Arg474Cys 
 De novo 
  
 Simplex 
 GEN1136R028 
 frameshift_variant 
 c.247_250dup 
 p.Cys84SerfsTer4 
 Unknown 
  
  
 GEN1136R029 
 synonymous_variant 
 c.1138T>C 
 p.Leu380%3D 
 De novo 
  
  
 GEN1136R030 
 synonymous_variant 
 c.286T>C 
 p.Leu96%3D 
 De novo 
  
  
 GEN1136R031 
 stop_gained 
 c.3031C>T 
 p.Arg1011Ter 
 Unknown 
  
  
 GEN1136R032 
 stop_gained 
 c.2692A>T 
 p.Lys898Ter 
 De novo 
  
  
  et al.  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
17
Duplication
 1
 
17
Duplication
 1
 
17
Duplication
 49
 
17
Deletion
 5
 
17
Duplication
 1
 

No Animal Model Data Available

 

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