Summary Statistics:
ASD Reports: 14
Recent Reports: 0
Annotated variants: 35
Associated CNVs: 5
Evidence score: 3
Gene Score: S
Relevance to Autism
Koolen-De Vries syndrome (OMIM 610443), also known as 17q21.31 microdeletion syndrome, is a clinically heterogeneous disorder characterized by developmental delay, intellectual disability, hypotonia, and characteristic facial dysmorphism that is caused either by a truncating variant in the KANSL1 gene or a 17q21.31 microdeletion encompassing the KANSL1 gene. Koolen et al., 2016 described a novel cohort of 45 individuals with Koolen-De Vries syndrome and observed behavioral problems, including autism or autistic traits, in 57% of cases. A de novo missense variant in the KANSL1 gene was also identified in an ASD proband from the Simons Simplex Collection (Iossifov et al., 2014).
Molecular Function
This gene encodes a nuclear protein that is a subunit of two protein complexes involved with histone acetylation, the MLL1 complex and the NSL1 complex. The corresponding protein in Drosophila interacts with K(lysine) acetyltransferase 8, which is also a subunit of both the MLL1 and NSL1 complexes.
References
Primary
The Koolen-de Vries syndrome: a phenotypic comparison of patients with a 17q21.31 microdeletion versus a KANSL1 sequence variant.
Koolen-De Vries syndrome
ASD or autistic features
Support
Large-scale targeted sequencing identifies risk genes for neurodevelopmental disorders
ASD, DD
Support
Mutational Landscape of Autism Spectrum Disorder Brain Tissue
ASD
Support
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Kansl1 haploinsufficiency impairs autophagosome-lysosome fusion and links autophagic dysfunction with Koolen-de Vries syndrome in mice
Koolen-De Vries syndrome
Support
Deleterious coding variation associated with autism is shared across ancestries.
ASD
Support
Rare variants in the outcome of social skills group training for autism
ASD
Support
A new blood DNA methylation signature for Koolen-de Vries syndrome: Classification of missense KANSL1 variants and comparison to fibroblast cells
Koolen-de Vries syndrome
Support
A single center experience with publicly funded clinical exome sequencing for neurodevelopmental disorders or multiple congenital anomalies
DD, ID
ADHD, epilepsy/seizures
Support
Decoding complex inherited phenotypes in rare disorders: the DECIPHERD initiative for rare undiagnosed diseases in Chile
ID, epilepsy/seizures
Support
A convergent molecular network underlying autism and congenital heart disease
ASD, congenital heart disease
Support
BPD, anxiety disorder, ID
Support
Exome Sequencing in 200 Intellectual Disability/Autistic Patients: New Candidates and Atypical Presentations
ID
DD, epilepsy/seizures
GEN1136R001
missense_variant
c.729A>C
p.Gln243His
De novo
Simplex
GEN1136R002
missense_variant
c.1775G>A
p.Arg592Gln
De novo
GEN1136R003
stop_gained
c.727C>T
p.Gln243Ter
Unknown
GEN1136R004
stop_gained
c.727C>T
p.Gln243Ter
Unknown
GEN1136R005
stop_gained
c.190C>T
p.Arg64Ter
Unknown
GEN1136R006
missense_variant
c.3019C>T
p.Arg1007Trp
Familial
Paternal
GEN1136R007
missense_variant
c.2861G>A
p.Arg954Gln
Unknown
GEN1136R008
missense_variant
c.3221G>A
p.Arg1074Gln
Unknown
Simplex
GEN1136R009
missense_variant
c.1871G>A
p.Arg624His
Unknown
GEN1136R010
missense_variant
c.1421G>A
p.Arg474His
Unknown
GEN1136R011
missense_variant
c.3301C>T
p.Arg1101Cys
Unknown
GEN1136R012
frameshift_variant
c.985_986del
p.Leu329GlufsTer22
Unknown
GEN1136R013
frameshift_variant
c.3291dup
p.Thr1098HisfsTer20
Unknown
GEN1136R014
frameshift_variant
c.1639_1646del
p.Gly547Ter
Unknown
GEN1136R015
frameshift_variant
c.238dup
p.Ala80GlyfsTer7
Unknown
GEN1136R016
stop_gained
c.868C>T
p.Arg290Ter
Unknown
GEN1136R017
stop_gained
c.190C>T
p.Arg64Ter
Unknown
GEN1136R018
stop_gained
c.190C>T
p.Arg64Ter
Unknown
GEN1136R019
missense_variant
c.56G>A
p.Arg19Gln
Unknown
GEN1136R020
missense_variant
c.56G>A
p.Arg19Gln
Unknown
GEN1136R021
missense_variant
c.3056G>A
p.Arg1019His
Unknown
GEN1136R022
missense_variant
c.1855C>T
p.Arg619Trp
Unknown
GEN1136R023
missense_variant
c.895C>T
p.Arg299Cys
Unknown
GEN1136R024
missense_variant
c.3185G>A
p.Arg1062His
Unknown
GEN1136R025
frameshift_variant
c.985_986del
p.Leu329GlufsTer22
De novo
GEN1136R026
frameshift_variant
c.502_503insGTTCTGATCAT
p.Ser168CysfsTer38
De novo
Simplex
GEN1136R027
missense_variant
c.1420C>T
p.Arg474Cys
De novo
Simplex
GEN1136R028
frameshift_variant
c.247_250dup
p.Cys84SerfsTer4
Unknown
GEN1136R029
synonymous_variant
c.1138T>C
p.Leu380=
De novo
GEN1136R030
synonymous_variant
c.286T>C
p.Leu96=
De novo
GEN1136R031
stop_gained
c.3031C>T
p.Arg1011Ter
Unknown
GEN1136R032
stop_gained
c.2692A>T
p.Lys898Ter
De novo
GEN1136R033
missense_variant
c.2827C>T
p.Arg943Trp
De novo
Simplex
GEN1136R034
synonymous_variant
c.2526T>G
p.Val842=
De novo
Simplex
GEN1136R035
synonymous_variant
c.2502A>C
p.Ala834=
De novo
No Common Variants Available
No Animal Model Data Available
No Interactions Available