Summary Statistics:
ASD Reports: 16
Recent Reports: 2
Annotated variants: 35
Associated CNVs: 12
Evidence score: 2
Gene Score: 3
Relevance to Autism
A rare deletion in the CHRNA7 gene has been identified with developmental delay and intellectual disability (Mikhail et al., 2011). In addition, a rare CHRNA7 duplication was found in two patients with autism and intellectual disability (Leblond et al., 2012).
Molecular Function
The nicotinic acetylcholine receptors (nAChRs) are members of a superfamily of ligand-gated ion channels that mediate fast signal transmission at synapses. The nAChRs are thought to be hetero-pentamers composed of homologous subunits. The protein encoded by this gene forms a homo-oligomeric channel, displays marked permeability to calcium ions and is a major component of brain nicotinic receptors that are blocked by, and highly sensitive to, alpha-bungarotoxin. Once this receptor binds acetylcholine, it undergoes an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.
References
Primary
Clinically relevant single gene or intragenic deletions encompassing critical neurodevelopmental genes in patients with developmental delay, mental...
DD
ID
Support
Application of custom-designed oligonucleotide array CGH in 145 patients with autistic spectrum disorders.
ASD
DD/ID
Support
Altered neuronal physiology, development, and function associated with a common chromosome 15 duplication involving CHRNA7
ASD
ADHD, DD
Support
Application of array comparative genomic hybridization in 102 patients with epilepsy and additional neurodevelopmental disorders.
Epilepsy
ASD, DD, ID
Support
Exploring the biological role of postzygotic and germinal de novo mutations in ASD
ASD
Support
Identification of single gene deletions at 15q13.3: further evidence that CHRNA7 causes the 15q13.3 microdeletion syndrome phenotype.
DD, ID, ASD, ADHD
Support
15q13.3 duplication in two patients with childhood-onset schizophrenia.
SCZ
Support
Genetic and functional analyses of SHANK2 mutations suggest a multiple hit model of autism spectrum disorders.
ASD
ID
Support
Analysis of CHRNA7 rare variants in autism spectrum disorder susceptibility.
ASD
Support
Exome sequencing of ion channel genes reveals complex profiles confounding personal risk assessment in epilepsy.
Epilepsy
Support
Identification of risk genes for autism spectrum disorder through copy number variation analysis in Austrian families.
ASD
Support
A small recurrent deletion within 15q13.3 is associated with a range of neurodevelopmental phenotypes.
DD, ID, epilepsy/seizures
Support
Dysfunction of SHANK2 and CHRNA7 in a patient with intellectual disability and language impairment supports genetic epistasis of the two loci.
DD, ID
Support
Integrating de novo and inherited variants in 42
ASD
Recent Recommendation
Functional Consequences of CHRNA7 Copy-Number Alterations in Induced Pluripotent Stem Cells and Neural Progenitor Cells.
Recent Recommendation
CHRNA7 triplication associated with cognitive impairment and neuropsychiatric phenotypes in a three-generation pedigree.
ASD, DD, ID
BPD, Epilepsy
GEN292R001
copy_number_loss
GEN292R002
copy_number_gain
Familial
Maternal
Simplex
GEN292R003
copy_number_gain
Familial
Paternal
Simplex
GEN292R004
copy_number_loss
Familial
Paternal
Extended multiplex
GEN292R005
copy_number_loss
Familial
Paternal (unconfirmed)
Extended multiplex
GEN292R006
copy_number_loss
Unknown
Unknown
GEN292R007
copy_number_loss
Unknown
Unknown
GEN292R008
copy_number_loss
De novo
Unknown
GEN292R009
copy_number_loss
Familial
Maternal
Simplex
GEN292R010
copy_number_loss
Familial
Paternal
Simplex
GEN292R011
copy_number_loss
Unknown
Unknown
GEN292R012
copy_number_loss
Unknown
Unknown
GEN292R013a
copy_number_loss
Unknown
Unknown
GEN292R014
copy_number_gain
Familial
Maternal
GEN292R015
copy_number_gain
Familial
Maternal
Multiplex
GEN292R016
missense_variant
G>A
p.Gly200Arg
Unknown
Unknown
GEN292R017
intron_variant
G>A
Unknown
Unknown
GEN292R018
intron_variant
C>T
Unknown
Unknown
GEN292R019
copy_number_gain
Familial
Paternal
GEN292R020
copy_number_gain
Familial
Maternal and paternal
Multi-generational
GEN292R021
copy_number_loss
Familial
Paternal
Multiplex
GEN292R022
copy_number_gain
Familial
Paternal
GEN292R023
missense_variant
c.1466G>A
p.Trp489Ter
Familial
Maternal
GEN292R024
2KB_upstream_variant
Unknown
GEN292R025
2KB_upstream_variant
c.-70_-69del
Unknown
GEN292R026
2KB_upstream_variant
Unknown
GEN292R027
5_prime_UTR_variant
c.-86C>T
Unknown
GEN292R028a
2KB_upstream_variant
c.1-129A>G
Familial
Paternal
GEN292R028b
5_prime_UTR_variant
c.27C>T
Familial
Maternal
GEN292R029
copy_number_gain
Familial
Paternal
Multiplex
GEN292R030
copy_number_gain
Familial
Paternal
Multi-generational
GEN292R031
missense_variant
c.127C>T
p.Pro43Ser
De novo
Simplex
GEN292R032
copy_number_gain
Familial
Maternal
Multiplex
GEN292R033
missense_variant
c.137A>G
p.Asn46Ser
De novo
GEN292R034
synonymous_variant
c.156C>A
p.Gly52%3D
De novo
No Common Variants Available
15
Deletion-Duplication
14
15
Deletion-Duplication
53
15
Deletion-Duplication
78
No Animal Model Data Available
Summary Statistics:
Total Interactions: 17
Total Publications: 9
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Interactor Symbol
Interactor Name
Interactor Organism
Entrez ID
Uniprot ID
Interaction Type
Evidence
Reference
APP
amyloid beta (A4) precursor protein
351
P05067
IP/WB; in vitro binding assay
Wang HY , et al. 2000
ATXN1
ataxin 1
6310
P54253
Y2H
Suter B , et al. 2013
FMR1
fragile X mental retardation 1
2332
G8JLE9
PAR-CLIP; RNA immunoprecipitation (RIP)
Ascano M Jr , et al. 2012
MECP2
methyl CpG binding protein 2 (Rett syndrome)
4204
P51608
ChIP-chip
Yasui DH , et al. 2011
TFAP2A
transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)
7020
P05549
Luciferase reporter assay; EMSA; ChIP
Finlay-Schultz J , et al. 2011
Gnai1
guanine nucleotide binding protein (G protein), alpha inhibiting 1
14677
B2RSH2
Affinity chromatography; LC-MS/MS; IP/WB
King JR , et al. 2015
Gnai2
guanine nucleotide binding protein (G protein), alpha inhibiting 2
14678
P08752
Affinity chromatography; LC-MS/MS; IP/WB
King JR , et al. 2015
Gnai3
guanine nucleotide binding protein (G protein), alpha inhibiting 3
14679
Q9DC51
Affinity chromatography; LC-MS/MS; IP/WB
King JR , et al. 2015
Gnaq
guanine nucleotide binding protein, alpha q polypeptide
14682
P21279
Affinity chromatography; LC-MS/MS; IP/WB
King JR , et al. 2015
Gnas
GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus
14683
P63094
Affinity chromatography; LC-MS/MS; IP/WB
King JR , et al. 2015
Gnb1
guanine nucleotide binding protein (G protein), beta 1
14688
P62874
Affinity chromatography; LC-MS/MS; IP/WB
King JR , et al. 2015
Gnb2
guanine nucleotide binding protein (G protein), beta 2
14693
P62880
Affinity chromatography; LC-MS/MS; IP/WB
King JR , et al. 2015
Gnb3
guanine nucleotide binding protein (G protein), beta 3
14695
Q61011
Affinity chromatography; LC-MS/MS; IP/WB
King JR , et al. 2015
Adcy6
adenylate cyclase 6
25289
F1LSD1
IP/WB
Oshikawa J , et al. 2003
ATP2B2
ATPase, Ca++ transporting, plasma membrane 2
24215
P11506
in silico target prediction; IP/WB
Gmez-Varela D , et al. 2012
Fyn
FYN oncogene related to SRC, FGR, YES
25150
Q62844
IP/WB
Kihara T , et al. 2001
Pik3r1
phosphoinositide-3-kinase, regulatory subunit 1 (alpha)
25513
Q63787
IP/WB
Kihara T , et al. 2001