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3p14.3-p14.1CNV Type: Deletion


Largest CNV size: 6320000 bp

Statistics Box:
Number of Reports: 1



Summary Information

A de novo 6.32 Kb deletion affecting this region was identified in a pair of male monozygotic twins presenting with developmental delay and autistic features (Schwaibold et al., 2013).

Additional Locus Information

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USCS Symbol             NCBI Symbol

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            Decipher Symbol

References

Major Reports

Title
Author, Year
Report Class
CNV Type
A 3p interstitial deletion in two monozygotic twin brothers and an 18-year-old man: further characterization and review.
Deletion

Minor Reports

Title
Author, Year
Report Class
CNV Type

No Minor Reports

Cases

Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
 schwaibold_13_ID/DD/ASD_discovery_cases
 Three patients (two monozygotic twin brothers, one unrelated 18-year-old man) with 3p interstitial deletions and similar phenotypes
 3
 All three cases display severe intellectual disability (ID), psychomotor delay, autistic features, and mild facial dysmorphisms
 Range, 2 yrs. 10 mos.-18 yrs.
 Male
 6320000
 2
 0
 2

Controls

No Control Data Available

Cases

Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
 schwaibold_13_ID/DD/ASD_discovery_cases
  Germany
 aCGH
  Agilent SurePrint G3 4x180K
 
 Feature Extraction v9.1, Cytogenomics 2.0 (Agilent)
 qPCR

Controls

No Control Data Available

Cases

Patient ID
Author, Year
Age
Gender
Primary Diagnosis
Clinical Profile
Cognitive Profile
CNV Start
CNV End
CNV Size
Genome Build
Type Method
Validation
  schwaibold_13_ID/DD/ASD_discovery_cases-case1
 2 yrs. 10 mos.
 M
 Developmental delay and autistic features
 Birth/neonatal history: intrauterine growth retardation (IUGR); C-section performed in 28th week of gestation due to pathologies in Doppler sonography after otherwise uneventful pregnancy; birth weight 3rd %ile, birth length <3rd %ile, OFC 10th-25th %ile; Apgar scores of 8/9/9; transferred to NICU due to postnatal respiratory insufficiency; OFC fell below 3rd %ile shortly after birth. Developmental milestones: sitting without support at 12 months, started crawling between 12-15 months, unable to walk without support at age of 2 years 10 months. Language and communication evaluation: capable of building double syllables that were not directed to a precise person or thing. Motor and musculoskeletal evaluation: unable to walk without support at age of 2 years 10 months; physiotherapy needed due to too low or too high muscular tone. Behavioral/psychiatric evaluation: demonstration of some autistic features (e.g., stereotypic movements) and anxiety in unfamiliar situations. Other features: severe feeding problems with frequent regurgitation of food; poor appetite and ate only pureed food at age of 2 years; mild renal malformations detected by ultrasound; persisting Ductus arteriosus Botalli, which responded to pharmacotherapy, and small persisting foramen ovale observed in postnatal ECG. Dysmorphic features: distinctively arched & mildly downslanting eyebrows, positional plagiocephalus, low-set and posteriorly rotated ears. Family history: similarly affected male monozygotic twin (schwaibold_13_ID/DD/ASD_discovery_cases-case2); twins were first children of healthy non-consanguineous parents; no family history of congenital anomalies or intellectual disability.
 Developmental delay
 58259067
 64586023
  6326957
 GRCh38
 Deletion
 Yes
  schwaibold_13_ID/DD/ASD_discovery_cases-case2
 2 yrs. 10 mos.
 M
 Developmental delay and autistic features
 Birth/neonatal history: developed hydrocephalus internus; intrauterine growth retardation (IUGR); C-section performed in 28th week of gestation due to pathologies in Doppler sonography after otherwise uneventful pregnancy; birth weight 3rd %ile, birth length <3rd %ile, OFC 25th %ile; Apgar scores of 8/9/9; transferred to NICU due to postnatal respiratory insufficiency; post-natal increase in hydrocephalus internus resulted in ventriculoperitoneal shunt. Developmental milestones: delay of about 3 months compared to monozygotic twin brother. Language and communication evaluation: capable of building double syllables that were not directed to a precise person or thing. Motor and musculoskeletal evaluation: physiotherapy needed due to too low or too high muscular tone. Behavioral/psychiatric evaluation: demonstration of some autistic features (e.g., stereotypic movements) and anxiety in unfamiliar situations. Brain imaging: Brain MRI at age of 3 months revealed severe hypoplasia of corpus callosum; subsequent MRI at age of 15 months raised suspicion of periventricular leukomalacia. Other features: severe feeding problems with frequent regurgitation of food; poor appetite and ate only pureed food at age of 2 years; mild renal malformations detected by ultrasound; persisting Ductus arteriosus Botalli, which responded to pharmacotherapy, and small persisting foramen ovale observed in postnatal ECG. Dysmorphic features: distinctively arched & mildly downslanting eyebrows, positional plagiocephalus, low-set and posteriorly rotated ears, thick left thumb with sites for two nails (indicated two distal phalanges, X-ray confirmed double thumb type Wassel II), cowlicks. Family history: similarly affected male monozygotic twin (schwaibold_13_ID/DD/ASD_discovery_cases-case1); twins were first children of healthy non-consanguineous parents; no family history of congenital anomalies or intellectual disability.
 Developmental delay
 58259067
 64586023
  6326957
 GRCh38
 Deletion
 Yes

Controls

No Control Data Available

Cases

Patient ID
Validation Description
Primary Disorder Inheritence
Inheritence
Family Profile
Disease Segregation
Gene Content
Altered Gene Expression
 schwaibold_13_ID/DD/ASD_discovery_cases-case1
 qPCR
 
 De novo
 Multiplex
 Likely segregated
 PDHB,KCTD6,MIR548BB,PPIAP70,PPIAP71,RPL10AP6,RNU2-10P,RN7SL863P,RNU6-139P,KRT8P35,UBL5P3,RNA5SP134,THOC7-AS1,SCAANT1,PSMD6-AS2,LINC00994,PRICKLE2-AS2,PRDX3P4,RNU6-739P,ABHD6,RPP14,HTD2,PXK,ACOX2,FAM3D-AS1,FAM3D,PTPRG-AS1,C3orf14,FEZF2,SNTN,THOC7,PSMD6,PSMD6-AS1,PRICKLE2-AS3,ADAMTS9-AS1,FAM107A,C3orf67-AS1,CADPS,LINC00698,SYNPR,SYNPR-AS1,C3orf49,PRICKLE2-AS1,PRICKLE2,ADAMTS9,FHIT,PTPRG,ATXN7,C3orf67
 
 schwaibold_13_ID/DD/ASD_discovery_cases-case2
 qPCR
 
 De novo
 Multiplex
 Likely segregated
 PDHB,KCTD6,MIR548BB,PPIAP70,PPIAP71,RPL10AP6,RNU2-10P,RN7SL863P,RNU6-139P,KRT8P35,UBL5P3,RNA5SP134,THOC7-AS1,SCAANT1,PSMD6-AS2,LINC00994,PRICKLE2-AS2,PRDX3P4,RNU6-739P,ABHD6,RPP14,HTD2,PXK,ACOX2,FAM3D-AS1,FAM3D,PTPRG-AS1,C3orf14,FEZF2,SNTN,THOC7,PSMD6,PSMD6-AS1,PRICKLE2-AS3,ADAMTS9-AS1,FAM107A,C3orf67-AS1,CADPS,LINC00698,SYNPR,SYNPR-AS1,C3orf49,PRICKLE2-AS1,PRICKLE2,ADAMTS9,FHIT,PTPRG,ATXN7,C3orf67
 

Controls

No Control Data Available
No Animal Model Data Available
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