3p14.3-p14.1CNV Type: Deletion
Largest CNV size: 6320000 bp
Statistics Box:
Number of Reports: 1
Number of Reports: 1
Summary Information
A de novo 6.32 Kb deletion affecting this region was identified in a pair of male monozygotic twins presenting with developmental delay and autistic features (Schwaibold et al., 2013).
Additional Locus Information
References
Major Reports
Title
Author, Year
Report Class
CNV Type
A 3p interstitial deletion in two monozygotic twin brothers and an 18-year-old man: further characterization and review.
Deletion
Minor Reports
Title
Author, Year
Report Class
CNV Type
No Minor Reports
Cases
Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
schwaibold_13_ID/DD/ASD_discovery_cases
Three patients (two monozygotic twin brothers, one unrelated 18-year-old man) with 3p interstitial deletions and similar phenotypes
3
All three cases display severe intellectual disability (ID), psychomotor delay, autistic features, and mild facial dysmorphisms
Range, 2 yrs. 10 mos.-18 yrs.
Male
6320000
2
0
2
Controls
No Control Data Available
Cases
Patient ID
Author, Year
Age
Gender
Primary Diagnosis
Clinical Profile
Cognitive Profile
CNV Start
CNV End
CNV Size
Genome Build
Type Method
Validation
schwaibold_13_ID/DD/ASD_discovery_cases-case1
2 yrs. 10 mos.
M
Developmental delay and autistic features
Birth/neonatal history: intrauterine growth retardation (IUGR); C-section performed in 28th week of gestation due to pathologies in Doppler sonography after otherwise uneventful pregnancy; birth weight 3rd %ile, birth length <3rd %ile, OFC 10th-25th %ile; Apgar scores of 8/9/9; transferred to NICU due to postnatal respiratory insufficiency; OFC fell below 3rd %ile shortly after birth. Developmental milestones: sitting without support at 12 months, started crawling between 12-15 months, unable to walk without support at age of 2 years 10 months. Language and communication evaluation: capable of building double syllables that were not directed to a precise person or thing. Motor and musculoskeletal evaluation: unable to walk without support at age of 2 years 10 months; physiotherapy needed due to too low or too high muscular tone. Behavioral/psychiatric evaluation: demonstration of some autistic features (e.g., stereotypic movements) and anxiety in unfamiliar situations. Other features: severe feeding problems with frequent regurgitation of food; poor appetite and ate only pureed food at age of 2 years; mild renal malformations detected by ultrasound; persisting Ductus arteriosus Botalli, which responded to pharmacotherapy, and small persisting foramen ovale observed in postnatal ECG. Dysmorphic features: distinctively arched & mildly downslanting eyebrows, positional plagiocephalus, low-set and posteriorly rotated ears. Family history: similarly affected male monozygotic twin (schwaibold_13_ID/DD/ASD_discovery_cases-case2); twins were first children of healthy non-consanguineous parents; no family history of congenital anomalies or intellectual disability.
Developmental delay
58259067
64586023
6326957
GRCh38
Deletion
Yes
schwaibold_13_ID/DD/ASD_discovery_cases-case2
2 yrs. 10 mos.
M
Developmental delay and autistic features
Birth/neonatal history: developed hydrocephalus internus; intrauterine growth retardation (IUGR); C-section performed in 28th week of gestation due to pathologies in Doppler sonography after otherwise uneventful pregnancy; birth weight 3rd %ile, birth length <3rd %ile, OFC 25th %ile; Apgar scores of 8/9/9; transferred to NICU due to postnatal respiratory insufficiency; post-natal increase in hydrocephalus internus resulted in ventriculoperitoneal shunt. Developmental milestones: delay of about 3 months compared to monozygotic twin brother. Language and communication evaluation: capable of building double syllables that were not directed to a precise person or thing. Motor and musculoskeletal evaluation: physiotherapy needed due to too low or too high muscular tone. Behavioral/psychiatric evaluation: demonstration of some autistic features (e.g., stereotypic movements) and anxiety in unfamiliar situations. Brain imaging: Brain MRI at age of 3 months revealed severe hypoplasia of corpus callosum; subsequent MRI at age of 15 months raised suspicion of periventricular leukomalacia. Other features: severe feeding problems with frequent regurgitation of food; poor appetite and ate only pureed food at age of 2 years; mild renal malformations detected by ultrasound; persisting Ductus arteriosus Botalli, which responded to pharmacotherapy, and small persisting foramen ovale observed in postnatal ECG. Dysmorphic features: distinctively arched & mildly downslanting eyebrows, positional plagiocephalus, low-set and posteriorly rotated ears, thick left thumb with sites for two nails (indicated two distal phalanges, X-ray confirmed double thumb type Wassel II), cowlicks. Family history: similarly affected male monozygotic twin (schwaibold_13_ID/DD/ASD_discovery_cases-case1); twins were first children of healthy non-consanguineous parents; no family history of congenital anomalies or intellectual disability.
Developmental delay
58259067
64586023
6326957
GRCh38
Deletion
Yes
Controls
No Control Data Available
Cases
Patient ID
Validation Description
Primary Disorder Inheritence
Inheritence
Family Profile
Disease Segregation
Gene Content
Altered Gene Expression
schwaibold_13_ID/DD/ASD_discovery_cases-case1
qPCR
De novo
Multiplex
Likely segregated
PDHB,KCTD6,MIR548BB,PPIAP70,PPIAP71,RPL10AP6,RNU2-10P,RN7SL863P,RNU6-139P,KRT8P35,UBL5P3,RNA5SP134,THOC7-AS1,SCAANT1,PSMD6-AS2,LINC00994,PRICKLE2-AS2,PRDX3P4,RNU6-739P,ABHD6,RPP14,HTD2,PXK,ACOX2,FAM3D-AS1,FAM3D,PTPRG-AS1,C3orf14,FEZF2,SNTN,THOC7,PSMD6,PSMD6-AS1,PRICKLE2-AS3,ADAMTS9-AS1,FAM107A,C3orf67-AS1,CADPS,LINC00698,SYNPR,SYNPR-AS1,C3orf49,PRICKLE2-AS1,PRICKLE2,ADAMTS9,FHIT,PTPRG,ATXN7,C3orf67
schwaibold_13_ID/DD/ASD_discovery_cases-case2
qPCR
De novo
Multiplex
Likely segregated
PDHB,KCTD6,MIR548BB,PPIAP70,PPIAP71,RPL10AP6,RNU2-10P,RN7SL863P,RNU6-139P,KRT8P35,UBL5P3,RNA5SP134,THOC7-AS1,SCAANT1,PSMD6-AS2,LINC00994,PRICKLE2-AS2,PRDX3P4,RNU6-739P,ABHD6,RPP14,HTD2,PXK,ACOX2,FAM3D-AS1,FAM3D,PTPRG-AS1,C3orf14,FEZF2,SNTN,THOC7,PSMD6,PSMD6-AS1,PRICKLE2-AS3,ADAMTS9-AS1,FAM107A,C3orf67-AS1,CADPS,LINC00698,SYNPR,SYNPR-AS1,C3orf49,PRICKLE2-AS1,PRICKLE2,ADAMTS9,FHIT,PTPRG,ATXN7,C3orf67
Controls
No Control Data Available
No Animal Model Data Available