11q13.2-q25CNV Type: Duplication
Largest CNV size: 59166138 bp
Statistics Box:
Number of Reports: 1
Number of Reports: 1
Summary Information
A large de novo duplication spanning the 11q13.2-q25 locus were identified in a male patient with global developmental delay, seizures, agenesis of the corpus callosum, hypotonia, dysmorphic features, and other congenital anomalies.
Additional Locus Information
References
Major Reports
Title
Author, Year
Report Class
CNV Type
Phenotypic heterogeneity of genomic disorders and rare copy-number variants.
Duplication
Minor Reports
Title
Author, Year
Report Class
CNV Type
No Minor Reports
Cases
Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
girirajan_12_ASD/DD/ID_discovery_cases
Samples from affected children submitted to Signature Genomic Laboratories from 2008-2010.
32587
Developmental delay with or without congenital malformations
59166138
0
1
1
Controls
Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
girirajan_12_ASD/DD/ID_discovery_controls
Persons found to have no overt neurological disorders during screening for other studies
8329
Control
59166138
NA
NA
NA
Cases
Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
girirajan_12_ASD/DD/ID_discovery_cases
aCGH
BACs aCGH, SignatureChipOS
FISH, aCGH, or confirmation by inheritance
Controls
Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
girirajan_12_ASD/DD/ID_discovery_controls
aCGH
BACs ACGH (SignatureChipoWG) or oligoarray (SignatureChipOS)
Cases
Patient ID
Author, Year
Age
Gender
Primary Diagnosis
Clinical Profile
Cognitive Profile
CNV Start
CNV End
CNV Size
Genome Build
Type Method
Validation
girirajan_12_ASD/DD/ID_discovery_cases-case24333
1 yrs 3 mos.
M
Developmental delay
Hypotonia. Agenesis of corpus callosum, bilateral hearing loss, seizures. Dysmorphic features: round face, frontal bossing, epicanthal folds, hypertelorism, broad nose, shallow nasal bridge, micrognathia, preauricular pits. Congenital anomalies: atrial septal defect, inguinal hernias. Intrauterine growth retardation (IUGR). Growth parameters: weight 75th %ile, height 3rd-10th %ile. Family history: healthy parents.
Global developmental delay
75876538
135056264
59179727
GRCh38
Duplication
Yes
Controls
No Control Data Available
Cases
Patient ID
Validation Description
Primary Disorder Inheritence
Inheritence
Family Profile
Disease Segregation
Gene Content
Altered Gene Expression
girirajan_12_ASD/DD/ID_discovery_cases-case24333
FISH, aCGH, or confirmation by inheritance
De novo
Unknown
Unknown
PPP1R1AP1,RNA5SP344,TOMM20P1,RNU7-59P,RSF1-IT2,FTH1P16,RSF1-IT1,THRSP,RNU6-126P,RNU6-311P,COPS8P3,MIR708,MIR5579,RNU6-544P,ARL6IP1P3,MTND4LP18,MTND6P25,MIR4300,RPS28P7,FAM181B,SNORA70E,C1DP5,PCF11-AS1,LDHAL6DP,HNRNPA1P72,HNRNPCP6,RNU6-1292P,TMEM126B,CCDC89,SLC25A1P1,RNU6-560P,MIR6755,SETP17,RN7SL225P,PTP4A1P6,OR7E13P,OR7E2P,HNRNPCP8,XIAPP2,PSMA2P1,RNU6-1135P,MTCYBP41,MIR3166,GAPDHP70,RNU6-16P,CBX3P7,UBTFL10,TRIM77,UBTFL2,TRIM64DP,TRIM51BP,TRIM64B,MTND1P35,TRIM64,TRIM51EP,TRIM49C,UBTFL1,TUBAP2,MIR4490,MIR1261,OSBPL9P2,OSBPL9P3,TUBB4BP4,RPL7AP57,NDUFB11P1,PGAM1P9,RPS3AP42,SNRPGP16,RPL26P31,SRP14P2,RN7SL223P,SCARNA9,SNORA25,SNORA32,SNORD6,SNORA1,SNORA8,SNORD5,SNORA18,MIR1304,SNORA40,HPRT1P3,PHBP16,MIR548L,ANKRD49,FUT4,ST13P11,CWC15,KDM4F,SRSF8,BUD13P1,RNA5SP345,MIR1260B,RNA5SP346,MED28P5,RNA5SP347,RN7SKP53,RPA2P3,RN7SL222P,PPIAP43,RN7SKP115,MIR3920,RNA5SP535,RNU6-952P,MMP7,MMP8,MMP12,BOLA3P1,RNU7-159P,MMP13,MTCO3P15,MTATP6P15,MTCO2P15,MTCO1P15,MTND2P26,MTND1P36,MIR4693,CASP1,CARD17,CASP1P1,OR2AL1P,RNU4-55P,RNU6-277P,SMARCE1P1,RPS2P39,RNU6-654P,RNA5SP349,TFAMP2,RPSAP50,RNA5SP350,RPS17P15,COLCA2,MIR4491,RNU2-60P,MIR34B,MIR34C,RN7SKP273,GNG5P3,FDXACB1,C11orf1,RPL37AP8,HSPB2,RNA5SP351,PPIHP1,RNU6-893P,TIMM8B,TEX12,MRPS36P4,RPS12P21,RPS6P16,PLET1,ST13P10,RNU6-44P,RPL23AP62,RNU7-187P,NCAM1-AS1,MIR4301,MTRF1LP1,RPS29P19,CLDN25,ATF4P4,LRRC37A13P,RNU6-1107P,NXPE2P1,RPL12P46,LINC00900,LINC02151,APOA5,APOA4,APOC3,APOA1,RNY4P6,TAGLN,PRR13P3,RN7SL828P,SCN2B,HSPE1P18,CD3G,TTC36,RPL5P30,RNU6-1157P,MIR6716,TREHP1,RNU6-376P,SETP16,CXCR5,MIR4492,RPL23AP64,RPS25,TRAPPC4,HMBS,DPAGT1,PDZD3,RNU6-262P,MCAM,MIR6756,RNF26,C1QTNF5,DUXAP5,RNU6-1123P,TMEM136,ELOCP22,HMGB1P42,RPS4XP12,BMPR1AP2,RNU6-256P,MIR125B1,BLID,MIRLET7A2,MIR100,RNU4ATAC10P,RNU4ATAC5P,RNU6-592P,GLULP3,RNU4-23P,ATP5PBP5,RPL34P23,RPS26P43,RPL31P47,SNORD14E,SNORD14D,SNORD14C,PHBP17,MIR4493,SF3A3P2,OR6X1,RNU1-21P,OR6M1,OR6M2P,OR6M3P,TMEM225,OR8D4,OR4D5,OR6T1,OR10G6,OR10G5P,OR10G4,OR10G9,OR10G7,OR10D5P,OR10D4P,OR10D1P,OR10D3,OR8F1P,OR8G3P,OR8G2P,OR8G7P,OR8G1,OR8G5,SLC5A4P1,OR8D2,OR8B7P,OR8B6P,OR8B5P,OR8B1P,OR8C1P,OR8B2,OR8B3,OR8X1P,OR8B4,OR8B8,OR8A2P,OR8B9P,OR8B10P,OR8A3P,OR8B12,OR8Q1P,RNA5SP352,NRGN,ESAM,HEPN1,PKNOX2-AS1,RNU6-321P,RNU6-1156P,RNU2-35P,ACRV1,PATE2,PATE3,PATE4,VSIG10L2,NAP1L1P1,RNU4-86P,RN7SL351P,SRPRA,RPL35AP26,MIR3167,KIRREL3-AS3,RN7SKP121,RN7SKP279,MIR6090,ETS1-AS1,SENCR,C11orf45,RNU6-876P,RNU6-874P,ZNF123P,RPS27P20,LINC00167,ELOBP2,RPL34P21,DDX18P5,RN7SL778P,BAK1P2,MIR8052,PPP1R10P1,RN7SL167P,RNU6ATAC12P,NTM-AS1,OPCML-IT2,MIR4697HG,MIR4697,PTP4A2P2,ACAD8,WNT11,THAP12,GVQW3,LRRC32,GUCY2EP,TSKU,B3GNT6,OMP,GDPD4,KCTD14,NDUFC2-KCTD14,NDUFC2,KCTD21-AS1,KCTD21,USP35,DDIAS,RAB30,BCAS2P1,PCF11,CCDC90B,CYCSP28,TMEM126A,CREBZF,CCDC83,HIKESHI,FZD4,RAB38,CTSC,GRM5-AS1,TRIM49,TRIM53BP,TRIM49D2,TRIM53AP,TRIM64EP,CHORDC1,MTNR1B,DEUP1,SMCO4,TAF1D,C11orf54,MED17,PANX1,IZUMO1R,GPR83,MRE11,C11orf97,PIWIL4,KDM4D,ENDOD1,SESN3,FAM76B,MTMR2,CCDC82,ANGPTL5,CFAP300,YAP1,BIRC3,TMEM123,MMP20,MMP27,MMP10,MMP1,MMP3,DCUN1D5,DDI1,CASP12,CASP17P,CASP4,CASP5,CARD16,CASP1P2,MSANTD4,KBTBD3,AASDHPPT,ALKBH8,SLN,RAB39A,CUL5,NPAT,KDELC2,CYCSP29,C11orf87,FDX1,HNRNPA1P60,COLCA1,BTG4,C11orf88,PPP2R1B,ALG9-IT1,CRYAB,HSPB2-C11orf52,C11orf52,DLAT,NKAPD1,SDHD,IL18,KCTD9P4,PTS,ANKK1,DRD2,TMPRSS5,USP28,HTR3B,HTR3A,C11orf71,RBM7,REXO2,NXPE4,BUD13,APOA1-AS,PAFAH1B2,SIDT2,PCSK7,RNF214,BACE1-AS,CEP164,FXYD2,FXYD6,TMPRSS13,IL10RA,SMIM35,SCN4B,JAML,MPZL2,CD3E,CD3D,UBE4A,ATP5MG,TMEM25,IFT46,ARCN1,TREH,BCL9L,UPK2,RN7SL688P,FOXR1,SLC37A4,HYOU1,VPS11,H2AFX,C2CD2L,HINFP,ABCG4,NLRX1,CCDC153,MFRP,USP2,THY1,KRT8P7,TRIM29,OAF,POU2F3,TBCEL,SC5D,CRTAM,BSX,HSPA8,SCN3B,OR10S1,OR10G8,OR10N1P,OR8D1,OR8A1,PANX3,TBRG1,SPA17,VSIG2,ROBO3,ROBO4,HEPACAM,CCDC15,SLC37A2,TMEM218,KRT18P59,EI24,STT3A,CHEK1,PATE1,HYLS1,PUS3,DDX25,RPUSD4,FOXRED1,TIRAP,DCPS,ST3GAL4,KIRREL3-AS1,KIRREL3-AS2,LINC02098,KCNJ5,TP53AIP1,BARX2,LINC01395,TMEM45B,PRDM10,APLP2,ST14,ADAMTS15,LINC02551,SNX19,NTM-IT,OPCML-IT1,SPATA19,VPS26B,THYN1,GLB1L3,B3GAT1,UVRAG,ACER3,CAPN5,MYO7A,PAK1,RSF1,AAMDC,INTS4,ALG8,GAB2,NARS2,TENM4,MIR4300HG,RAB30-AS1,ANKRD42,SYTL2,EED,CCDC81,ME3,PRSS23,TMEM135,GRM5,TYR,NOX4,FOLH1B,TRIM49D1,DISC1FP1,FAT3,SLC36A4,CEP295,VSTM5,HEPHL1,AMOTL1,KDM4E,CEP57,MAML2,LINC02553,ARHGAP42,PGR,PGR-AS1,CEP126,BIRC2,DYNC2H1,PDGFD,LINC02552,CARD18,CWF19L2,ELMOD1,SLC35F2,ACAT1,ATM,C11orf65,EXPH5,DDX10,ARHGAP20,C11orf53,POU2AF1,LAYN,SIK2,ALG9,DIXDC1,PIH1D2,TTC12,ZW10,ZBTB16,NXPE1,NXPE2,ZPR1,SIK3,BACE1,FXYD6-FXYD2,TMPRSS4,MPZL3,PHLDB1,DDX6,CCDC84,CBL,USP2-AS1,NECTIN1,ARHGEF12,TECTA,SORL1,MIR100HG,JHY,CLMP,GRAMD1B,VWA5A,SIAE,PKNOX2,FEZ1,CDON,FAM118B,GSEC,ETS1,FLI1,KCNJ1,NFRKB,ZBTB44,ADAMTS8,C11orf44,IGSF9B,JAM3,GLB1L2,EMSY,CLNS1A,AQP11,PRCP,PICALM,NAALAD2,JRKL,JRKL-AS1,CNTN5,TRPC6,WTAPP1,GRIA4,GUCY1A2,RDX,ZC3H12C,LINC02550,BCO2,NCAM1,NNMT,CADM1,KMT2A,GRIK4,UBASH3B,ZNF202,MSANTD2,KIRREL3,ARHGAP32,NTM,OPCML,DLG2,DSCAML1,NCAPD3
Controls
No Control Data Available
No Animal Model Data Available