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Relevance to Autism

De novo variants in the ZMYND8 gene, including two protein-truncating variants, have been identified in ASD probands from the Simons Simplex Collection, the Autism Sequencing Consortium, and the Autism Genetic Resource Exchange (Iossifov et al., 2014; Yuen et al., 2017; Satterstrom et al., 2020). TADA analysis of de novo variants from the Simons Simplex Collection and the Autism Sequencing Consortium and protein-truncating variants from iPSYCH in Satterstrom et al., 2020 identified ZMYND8 as a candidate gene with a false discovery rate (FDR) between 0.01 and 0.05 (0.01 < FDR 0.05). Dias et al., 2022 reported 11 unrelated individuals with ZMYND8 variants presenting with a neurodevelopmental syndrome characterized by intellectual disability with variable cardiovascular, ophthalmologic and skeletal anomalies; four individuals were diagnosed with autism spectrum disorder, and two others presented with autistic features. Additional functional analysis of ZMYND8 missense variants identified in affected individuals in Dias et al., 2022 demonstrated disrupted protein interactions.

Molecular Function

The protein encoded by this gene is a receptor for activated C-kinase (RACK) protein. The encoded protein has been shown to bind in vitro to activated protein kinase C beta I. In addition, this protein is a cutaneous T-cell lymphoma-associated antigen. Finally, the protein contains a bromodomain and two zinc fingers, and is thought to be a transcriptional regulator.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Mutational Landscape of Autism Spectrum Disorder Brain Tissue
ASD
Support
Prevalence and phenotypic impact of rare potentially damaging variants in autism spectrum disorder
ASD
Support
A recurrent PJA1 variant in trigonocephaly and neurodevelopmental disorders
ASD, DD, epilepsy/seizures
Support
Whole genome sequencing resource identifies 18 new candidate genes for autism spectrum disorder
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Recent Recommendation
De Novo ZMYND8 variants result in an autosomal dominant neurodevelopmental disorder with cardiac malformations
DD, ID
ASD or autistic features, epilepsy/seizures
Recent recommendation
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1159R001 
 missense_variant 
 c.2032G>A 
 p.Ala678Thr 
 De novo 
  
 Simplex 
 GEN1159R002 
 missense_variant 
 c.1786A>G 
 p.Ile596Val 
 De novo 
  
 Multiplex 
 GEN1159R003 
 frameshift_variant 
 c.1964dup 
 p.Pro656AlafsTer10 
 De novo 
  
 Simplex 
 GEN1159R004 
 frameshift_variant 
 c.3621del 
 p.Ser1208ArgfsTer62 
 De novo 
  
 Simplex 
 GEN1159R005 
 frameshift_variant 
 c.2154_2158del 
 p.Arg719GlyfsTer5 
 De novo 
  
 Simplex 
 GEN1159R006 
 frameshift_variant 
 c.3642del 
 p.Ser1215ArgfsTer62 
 Unknown 
  
  
 GEN1159R007 
 synonymous_variant 
 c.3354G>A 
 p.Ser1118%3D 
 Unknown 
  
  
 GEN1159R008 
 missense_variant 
 c.749G>A 
 p.Gly250Glu 
 De novo 
  
 Simplex 
 GEN1159R009 
 missense_variant 
 c.931T>C 
 p.Trp311Arg 
 De novo 
  
 Simplex 
 GEN1159R010 
 missense_variant 
 c.981C>G 
 p.Phe327Leu 
 De novo 
  
 Simplex 
 GEN1159R011 
 missense_variant 
 c.1060A>G 
 p.Lys354Glu 
 De novo 
  
 Simplex 
 GEN1159R012 
 missense_variant 
 c.2998G>A 
 p.Glu1000Lys 
 De novo 
  
 Simplex 
 GEN1159R013 
 missense_variant 
 c.3175T>A 
 p.Cys1059Ser 
 De novo 
  
 Simplex 
 GEN1159R014 
 missense_variant 
 c.3083A>G 
 p.Lys1028Arg 
 De novo 
  
 Simplex 
 GEN1159R015 
 missense_variant 
 c.3223T>C 
 p.Trp1075Arg 
 De novo 
  
 Simplex 
 GEN1159R016 
 missense_variant 
 c.3223T>C 
 p.Trp1075Arg 
 Unknown 
  
 Simplex 
 GEN1159R017 
 frameshift_variant 
 c.969del 
 p.Pro324LeufsTer4 
 De novo 
  
 Simplex 
 GEN1159R018 
 frameshift_variant 
 c.1964dup 
 p.Pro656AlafsTer5 
 De novo 
  
 Simplex 
 GEN1159R019 
 synonymous_variant 
 c.237A>C 
 p.Ser79%3D 
 De novo 
  
 Simplex 
 GEN1159R020 
 stop_gained 
 c.882T>A 
 p.Asp294Glu 
 De novo 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
20
Deletion-Duplication
 8
 
20
Duplication
 1
 

No Animal Model Data Available

 

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