20q13.12CNV Type: Deletion-Duplication
Largest CNV size: 205300 bp
Statistics Box:
Number of Reports: 8
Number of Reports: 8
Summary Information
Summary statement in development
Additional Locus Information
References
Major Reports
Title
Author, Year
Report Class
CNV Type
Structural variation of chromosomes in autism spectrum disorder.
Duplication
Minor Reports
Title
Author, Year
Report Class
CNV Type
Novel copy number variants in children with autism and additional developmental anomalies.
Deletion
Multiple recurrent de novo CNVs, including duplications of the 7q11.23 Williams syndrome region, are strongly associated with autism.
Deletion-Duplication
A discovery resource of rare copy number variations in individuals with autism spectrum disorder.
Duplication
Transmission disequilibrium of small CNVs in simplex autism.
Deletion-Duplication
Performance of case-control rare copy number variation annotation in classification of autism.
Deletion-Duplication
Paternally inherited cis-regulatory structural variants are associated with autism.
Deletion
Cases
Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
brandler_18_ASD_replication_cases
Affected individuals from MSSNG cohort (1395 cases from 1187 families) and the Simons Simplex 2 (SSC2) cohort (584 cases from simplex quad families)
1979
Cases diagnosed with ASD
N/A
N/A
254
2
0
2
davis_09_ASD_discovery_cases
Autistic cases from Autism Genetic Research Exchange (AGRE)
36
ASD: diagnosis confirmed through ADI and in some cases ADOS-G. 17 cases with syndromic autism (autism and less than common craniofacial dysmorphology, limb or digit abnormality, or ocular abnormality), 19 cases selected at random with autism and no associated syndromic features
NA
NA
41348
1
0
1
engchuan_15_ASD_discovery_cases
Samples from the Autism Genome Project (AGP)
1892
Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
N/A
85.78% Male
172864
8
2
10
krumm_13_ASD_discovery_cases
Probands from quad families ascertained as part of the Simons Simplex Collection (SSC); CNVs detected using data from four previously published exome sequencing studies (O'Roak et al., 2011; Iossifov et al., 2012; O'Roak et al., 2012; Sanders et al., 2012)
411
Diagnosis of ASD. Social Responsiveness Scale (SRS) used as a quantitative measure of social deficits
N/A
81.265% Male
6612
1
2
3
krumm_15_ASD_discovery_cases
Probands from the Simons Simplex Collection
2377
Diagnosis of ASD
N/A
N/A
3317
9
0
9
marshall_08_ASD_discovery_cases
Cohort of ASD families (237 simplex, 189 mulitplex) recruited from the Hospital for Sick Children, McMaster Univ., Memorial Univ., and other sites
427
ASD
205300
0
1
1
prasad_12_ASD_discovery_cases
Unrelated ASD cases recruited from three Canadian sites (Hospital for Sick Children, McMaster University, and Memorial University of Newfoundland); the majority of cases had been previously genotyped with results published in Marshall et al., 2008 and Pinto et al., 2010. 20 cases from initial cohort of 696 were excluded from further analysis (due to CNVs > 5 Mb).
676
Diagnosis of ASD based on meeting criteria on ADI-R and/or ADOS
NA
82.84% Male
15123
0
1
1
sanders_11_ASD_discovery_cases
Autistic probands from the Simons Simplex Collection (SSC). 872 probands in quartet families, 272 probands in trios.
1124
ASD diagnosis: 89.5% autism; 8.5% PDD-NOS, 2% Asperger syndrome. Mean full-scale IQ 85.1 1.5 (mean verbal IQ, 81.9 1.7; mean non-verbal IQ, 88.4 1.4)
Mean, 9.1 yrs.
86.1% Male
56931
20
1
21
Controls
Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
brandler_18_ASD_replication_controls
Unaffected individuals from the Simons Simplex 2 (SSC2) cohort (584 controls from simplex quad families)
584
Control (unaffected siblings from simplex quad families)
N/A
N/A
254
1
0
1
engchuan_15_ASD_discovery_controls
Platform-matched controls from three large studies: SAGE (Study of Addiction Genetics and Environment), Ontario Colorectal Cancer study, and HABC (Health Aging and Body Composition)
2342
Controls; subjects had no previous psychiatric history
N/A
46.67% Male
221224
14
4
18
kanduri_15_ASD_discovery_controls
Unrelated Finnish samples from the cohort of Health 2000 survey from an initial sample of 288 individuals following quality control
269
Controls screened for DSM-IV mental disorders using the Composite International Diagnostic Interview and psychotic disorders using the research version of the Structured Clinical Interview for DSM-IV
N/A
N/A
21980
2
0
2
krumm_13_ASD_discovery_controls
Unaffected siblings of ASD probands from quad families ascertained as part of the Simons Simplex Collection (SSC); CNVs detected using data from four previously published exome sequencing studies (O'Roak et al., 2011; Iossifov et al., 2012; O'Roak et al., 2012; Sanders et al., 2012)
411
Control (unaffected siblings of ASD probands). Social Responsiveness Scale (SRS) used as a quantitative measure of social deficits
N/A
46.47% Male
3269
1
0
1
krumm_15_ASD_discovery_controls
Unaffected siblings from quad families from the Simons Simplex Collection
1786
Control
N/A
N/A
86961
2
3
5
marshall_08_ASD_discovery_controls_1
German PopGen project and entries from Database of Genomic Variants
500
Controls
0
0
0
0
marshall_08_ASD_discovery_controls_2
Non-disease controls from Ontario population
1152
Controls
0
0
0
0
poultney_13_ASD_discovery_controls
Controls matched for European ancestry from NIMH and CEPH retained after filtering (original cohort size of 379 controls)
260
Control
N/A
47.49% Male (before filtering)
97747
1
1
2
prasad_12_ASD_discovery_controls
PDx controls [1000 DNA samples from reportedly healthy donors (50.2% male) from BioServe (Beltsville, MD)] and 4139 in-house controls previously reported in Krawcak et al. 2006, Stewart et al. 2009, and Bierut et al. 2010. CNVs identified in controls were used to define rare ASD-specific CNVs.
5139
Control
NA
NA (PDx controls 50.2% male)
15123
0
0
0
sanders_11_ASD_discovery_controls
Matched siblings of autistic probands from the Simons Simplex Collection (SSC).
872
Controls
Mean, 10.0 yrs.
105787
16
1
17
Cases
Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
brandler_18_ASD_replication_cases
N/A
WGS
Illumina HiSeq X10
ForestSV, Lumpy, Manta, Mobster, SV2
None
davis_09_ASD_discovery_cases
NA
Array SNP
Affymetrix 250K Nsp, Affymetrix 250K Syt
HMM
CNAG v2.0
None
engchuan_15_ASD_discovery_cases
Caucasian
Solid phase hybridization
Illumina 1M
None
krumm_13_ASD_discovery_cases
N/A
WES
Whole exome sequencing platforms used in four recent publications (O'Roak et al., 2011; Sanders et al., 2012; O'Roak et al., 2012, and Iossifov et al., 2012)
DNACopy, CGHCall
CoNIFER
None
krumm_15_ASD_discovery_cases
N/A
WES
CoNIFER, XHMM
Solid phase hybridization (Illumina 1M, 1 M Duo, or Omni 2.5)
marshall_08_ASD_discovery_cases
90% European, 4.5% European-mixed, 4.5% Asian, 0.07% African
Array SNP, karotyping
Affymetrix 500K
dChip, CNAG, GEMCA
qPCR, qmPCR
prasad_12_ASD_discovery_cases
Canada
aCGH
Agilent 1M
ADM-2, DNAcopy (R Bioconductor)
DNA Analytics v4.0.85 (Agilent), DNAcopy
None
sanders_11_ASD_discovery_cases
White non-Hispanic, 74.5%; mixed, 9.3%, Asian, 4.3%, White Hispanic, 4.0%, African-American, 3.8%; other, 4.2&
Solid phase hybridization
Illumina 1M v1, Illumina 1M v3
PennCNV, QuantiSNP, GNOSIS
Controls
Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
brandler_18_ASD_replication_controls
N/A
WGS
Illumina HiSeq X10
ForestSV, Lumpy, Manta, Mobster, SV2
None
engchuan_15_ASD_discovery_controls
Caucasian
Solid phase hybridization
Illumina 1M
None
kanduri_15_ASD_discovery_controls
Finnish
Solid phase hybridization
Illumina Infinium HD Human610-Quad BeadChip
QuantiSNP, PennCNV
Illumina BeadStudio
None
krumm_13_ASD_discovery_controls
N/A
WES
Whole exome sequencing platforms used in four recent publications (O'Roak et al., 2011; Sanders et al., 2012; O'Roak et al., 2012, and Iossifov et al., 2012)
DNACopy, CGHCall
CoNIFER
None
krumm_15_ASD_discovery_controls
N/A
WES
CoNIFER, XHMM
Solid phase hybridization (Illumina 1M, 1 M Duo, or Omni 2.5)
marshall_08_ASD_discovery_controls_1
European
Array SNP, karotyping
Affymetrix 500K
dChip, CNAG, GEMCA
marshall_08_ASD_discovery_controls_2
European
Array SNP, karotyping
Affymetrix 500K
dChip, CNAG, GEMCA
poultney_13_ASD_discovery_controls
European
WES
Agilent SureSelect Human All Exon v.2
XHMM
qPCR
prasad_12_ASD_discovery_controls
NA
aCGH
Agilent 1M
ADM-2, DNAcopy (R Bioconductor)
DNA Analytics v4.0.85 (Agilent), DNAcopy
sanders_11_ASD_discovery_controls
Solid phase hybridization
Illumina 1M v1 or Illumina 1M v3
PennCNV, QuantiSNP, GNOSIS
Cases
Patient ID
Author, Year
Age
Gender
Primary Diagnosis
Clinical Profile
Cognitive Profile
CNV Start
CNV End
CNV Size
Genome Build
Type Method
Validation
brandler_18_ASD_replication_cases-caseAU3807302
N/A
M
ASD
Case from MSSNG cohort
47210381
47210634
254
GRCh38
Deletion
No
brandler_18_ASD_replication_cases-caseSSC00269
N/A
M
ASD
Case from SSC_phase2 cohort
47210381
47210634
254
GRCh38
Deletion
No
davis_09_ASD_discovery_cases-AU019705
NA
NA
Non-syndromic ASD
Diagnosis: autism. Non-syndromic autism (no craniofacial dysmorphology, limb or digit malformation, or ocular abnormality).
43770270
43811618
41348
Unknown
Deletion
No
engchuan_15_ASD_discovery_cases-case13056_663
N/A
N/A
ASD
Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
44897496
44942370
44875
GRCh38
Duplication
No
engchuan_15_ASD_discovery_cases-case13057_673
N/A
N/A
ASD
Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
45708077
45751832
43756
GRCh38
Deletion
No
engchuan_15_ASD_discovery_cases-case20109_1504002
N/A
N/A
ASD
Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
45714903
45749938
35036
GRCh38
Deletion
No
engchuan_15_ASD_discovery_cases-case20159_4009001
N/A
N/A
ASD
Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
45714903
45749938
35036
GRCh38
Deletion
No
engchuan_15_ASD_discovery_cases-case20188_1727001
N/A
N/A
ASD
Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
45714903
45749938
35036
GRCh38
Deletion
No
engchuan_15_ASD_discovery_cases-case2163_1
N/A
N/A
ASD
Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
45708077
45751832
43756
GRCh38
Deletion
No
engchuan_15_ASD_discovery_cases-case5270_3
N/A
N/A
ASD
Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
47733014
47905878
172865
GRCh38
Duplication
No
engchuan_15_ASD_discovery_cases-case8463_202
N/A
N/A
ASD
Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
45714903
45749938
35036
GRCh38
Deletion
No
engchuan_15_ASD_discovery_cases-case8587_210
N/A
N/A
ASD
Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
45714903
45749938
35036
GRCh38
Deletion
No
engchuan_15_ASD_discovery_cases-case8638_201
N/A
N/A
ASD
Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
45714903
45749938
35036
GRCh38
Deletion
No
krumm_13_ASD_discovery_cases-case11304.p1
N/A
M
ASD
ASD proband from SSC quad family 11304. SRS score of 90.
Full-scale IQ (FSIQ) score of 53.
46599970
46606582
6613
GRCh38
Duplication
No (not tested)
krumm_13_ASD_discovery_cases-case11501.p1
N/A
M
ASD
ASD proband from SSC quad family 11501. SRS score of 64.
Full-scale IQ (FSIQ) score of 78.
45722367
45725636
3270
GRCh38
Deletion
No (not tested)
krumm_13_ASD_discovery_cases-case12473.p1
N/A
M
ASD
ASD proband from SSC quad family 12473. SRS score of 88.
Full-scale IQ (FSIQ) score of 49.
46599970
46606582
6613
GRCh38
Duplication
No (not tested)
krumm_15_ASD_discovery_cases-case11193.p1
N/A
Male
ASD
Proband from the Simons Simplex Collection (SSC). Family type: Trio
45722367
45725636
3270
GRCh38
Deletion
Yes
krumm_15_ASD_discovery_cases-case11501.p1
N/A
Male
ASD
Proband from the Simons Simplex Collection (SSC). Family type: Quad
45722367
45725636
3270
GRCh38
Deletion
Yes
krumm_15_ASD_discovery_cases-case11537.p1
N/A
Female
ASD
Proband from the Simons Simplex Collection (SSC). Family type: Quad
45722367
45725636
3270
GRCh38
Deletion
Yes
krumm_15_ASD_discovery_cases-case12208.p1
N/A
Male
ASD
Proband from the Simons Simplex Collection (SSC). Family type: Trio
45722367
45725636
3270
GRCh38
Deletion
Yes
krumm_15_ASD_discovery_cases-case13009.p1
N/A
Male
ASD
Proband from the Simons Simplex Collection (SSC). Family type: Trio
45722367
45725684
3318
GRCh38
Deletion
Yes
krumm_15_ASD_discovery_cases-case13082.p1
N/A
Male
ASD
Proband from the Simons Simplex Collection (SSC). Family type: Quad
45722367
45725684
3318
GRCh38
Deletion
Yes
krumm_15_ASD_discovery_cases-case13120.p1
N/A
Male
ASD
Proband from the Simons Simplex Collection (SSC). Family type: Quad
45722367
45725684
3318
GRCh38
Deletion
Yes
krumm_15_ASD_discovery_cases-case13303.p1
N/A
Female
ASD
Proband from the Simons Simplex Collection (SSC). Family type: Quad
45722367
45725636
3270
GRCh38
Deletion
Yes
krumm_15_ASD_discovery_cases-case13586.p1
N/A
Male
ASD
Proband from the Simons Simplex Collection (SSC). Family type: Quad
45722367
45725636
3270
GRCh38
Deletion
Yes
marshall_08_ASD_discovery_cases-SK0258-004
NA
M
ASD
NA
NA
47405849
47611149
205301
GRCh38
Duplication
Yes
prasad_12_ASD_discovery_cases-case47173L
NA
F
ASD
Diagnosis of ASD based on meeting criteria on ADI-R and/or ADOS. Novel CNV
44170911
44186033
15123
Unknown
Duplication
No
sanders_11_ASD_discovery_cases-11193.p1
7.5
M
Autism
NA
Full-scale IQ, 125; non-verbal IQ, 138; verbal IQ, 91
45722456
45749938
27483
GRCh38
Deletion
No
sanders_11_ASD_discovery_cases-11290.p1
11.3
M
ASD
NA
Full-scale IQ, 119; non-verbal IQ, 119; verbal IQ, 115
43665240
43700136
34897
GRCh38
Deletion
No
sanders_11_ASD_discovery_cases-11394.p1
5.3
M
Autism
NA
Full-scale IQ, 76; non-verbal IQ, 74; verbal IQ 87
43665240
43682448
17209
GRCh38
Deletion
No
sanders_11_ASD_discovery_cases-11501.p1
11.3
M
Autism
NA
Full-scale IQ, 78; non-verbal IQ, 79; verbal IQ, 71
45722456
45749938
27483
GRCh38
Deletion
No
sanders_11_ASD_discovery_cases-11537.p1
14.3
F
Autism
NA
Full-scale IQ, 64; non-verbal IQ, 66; verbal IQ, 63
45708285
45749938
41654
GRCh38
Deletion
No
sanders_11_ASD_discovery_cases-11948.p1
9.5
F
Autism
NA
Full-scale IQ, 52; non-verbal IQ, 62; verbal IQ, 46
43665240
43722171
56932
GRCh38
Deletion
No
sanders_11_ASD_discovery_cases-12033.p1
10.8
M
Autism
NA
Full-scale IQ, 90; non-verbal IQ, 102; verbal IQ, 73
43665240
43682448
17209
GRCh38
Deletion
No
sanders_11_ASD_discovery_cases-12041.p1
6.7
M
Autism
NA
Full-scale IQ, 108; non-verbal IQ, 119; verbal IQ, 87
45537883
45550333
12451
GRCh38
Deletion
No
sanders_11_ASD_discovery_cases-12208.p1
7.4
M
Autism
NA
Full-scale IQ, 109; non-verbal IQ, 118; verbal IQ, 89
45722456
45749938
27483
GRCh38
Deletion
No
sanders_11_ASD_discovery_cases-12281.p1
4.3
M
Autism
NA
Full-scale IQ, 107; non-verbal IQ, 99; verbal IQ, 117
43665240
43722171
56932
GRCh38
Deletion
No
sanders_11_ASD_discovery_cases-12404.p1
5.1
M
Autism
NA
Full-scale IQ, 48; non-verbal IQ, 50; verbal IQ, 57
47451332
47466905
15574
GRCh38
Duplication
No
sanders_11_ASD_discovery_cases-12423.p1
10.1
M
Autism
NA
Full-scale IQ, 104; non-verbal IQ, 115; verbal IQ, 82
43665240
43722171
56932
GRCh38
Deletion
No
sanders_11_ASD_discovery_cases-12454.p1
5.5
M
Autism
NA
Full-scale IQ, 72; non-verbal IQ, 82; verbal IQ, 62
43665240
43722171
56932
GRCh38
Deletion
No
sanders_11_ASD_discovery_cases-12582.p1
6.3
M
Autism
NA
Full-scale IQ, 57; non-verbal IQ, 73; verbal IQ, 45
43665240
43722171
56932
GRCh38
Deletion
No
sanders_11_ASD_discovery_cases-12634.p1
4.2
F
Autism
NA
Full-scale IQ, 69; non-verbal IQ, 75; verbal IQ, 63
43665240
43722171
56932
GRCh38
Deletion
No
sanders_11_ASD_discovery_cases-12944.p1
7.9
M
ASD
NA
Full-scale IQ, 77; non-verbal IQ, 84; verbal IQ, 60
43665240
43682448
17209
GRCh38
Deletion
No
sanders_11_ASD_discovery_cases-13015.p1
5.3
M
Autism
NA
Full-scale IQ, 78; non-verbal IQ, 80; verbal IQ, 81
43665240
43682448
17209
GRCh38
Deletion
No
sanders_11_ASD_discovery_cases-13082.p1
6
M
Autism
NA
Full-scale IQ, 61; non-verbal IQ, 67; verbal IQ, 61
45714903
45749938
35036
GRCh38
Deletion
No
sanders_11_ASD_discovery_cases-13083.p1
7.5
M
Autism
NA
Full-scale IQ, 52; non-verbal IQ, 67; verbal IQ, 23
45537883
45549667
11785
GRCh38
Deletion
No
sanders_11_ASD_discovery_cases-13120.p1
8
M
Autism
NA
Full-scale IQ, 113; non-verbal IQ, 109; verbal IQ, 118
45722456
45749938
27483
GRCh38
Deletion
No
sanders_11_ASD_discovery_cases-13303.p1
5.6
F
ASD
NA
Full-scale IQ, 101; non-verbal IQ, 107; verbal IQ, 90
45722456
45749420
26965
GRCh38
Deletion
No
Controls
Patient ID
Author, Year
Age
Gender
Primary Diagnosis
Clinical Profile
Cognitive Profile
CNV Start
CNV End
CNV Size
Genome Build
Type Method
Validation
brandler_18_ASD_replication_controls-controlSSC00272
N/A
F
control
Control from SSC_phase2 cohort
47210381
47210634
254
GRCh38
Deletion
No
engchuan_15_ASD_discovery_controls-controlB928410_0067942587
N/A
N/A
Control
No previous psychiatric history
43550805
43772029
221225
GRCh38
Duplication
No
engchuan_15_ASD_discovery_controls-controlB983089_1007842465
N/A
N/A
Control
No previous psychiatric history
45708077
45751832
43756
GRCh38
Deletion
No
engchuan_15_ASD_discovery_controls-controlHABC_900036_900036
N/A
N/A
Control
No previous psychiatric history
45714903
45749938
35036
GRCh38
Deletion
No
engchuan_15_ASD_discovery_controls-controlHABC_900056_900056
N/A
N/A
Control
No previous psychiatric history
45714903
45749938
35036
GRCh38
Deletion
No
engchuan_15_ASD_discovery_controls-controlHABC_900324_900324
N/A
N/A
Control
No previous psychiatric history
45714903
45749938
35036
GRCh38
Deletion
No
engchuan_15_ASD_discovery_controls-controlHABC_900359_900359
N/A
N/A
Control
No previous psychiatric history
45714903
45749938
35036
GRCh38
Deletion
No
engchuan_15_ASD_discovery_controls-controlHABC_900496_900496
N/A
N/A
Control
No previous psychiatric history
45714903
45749938
35036
GRCh38
Deletion
No
engchuan_15_ASD_discovery_controls-controlHABC_900624_900624
N/A
N/A
Control
No previous psychiatric history
46796920
46920988
124069
GRCh38
Duplication
No
engchuan_15_ASD_discovery_controls-controlHABC_901030_901030
N/A
N/A
Control
No previous psychiatric history
44899568
44942370
42803
GRCh38
Duplication
No
engchuan_15_ASD_discovery_controls-controlHABC_901057_901057
N/A
N/A
Control
No previous psychiatric history
45714903
45749938
35036
GRCh38
Deletion
No
engchuan_15_ASD_discovery_controls-controlHABC_901166_901166
N/A
N/A
Control
No previous psychiatric history
45714903
45749938
35036
GRCh38
Deletion
No
engchuan_15_ASD_discovery_controls-controlHABC_902554_902554
N/A
N/A
Control
No previous psychiatric history
45714903
45749938
35036
GRCh38
Deletion
No
engchuan_15_ASD_discovery_controls-controlHABC_902566_902566
N/A
N/A
Control
No previous psychiatric history
45714903
45749938
35036
GRCh38
Deletion
No
engchuan_15_ASD_discovery_controls-controlHABC_902597_902597
N/A
N/A
Control
No previous psychiatric history
45714903
45749938
35036
GRCh38
Deletion
No
engchuan_15_ASD_discovery_controls-controlHABC_902664_902664
N/A
N/A
Control
No previous psychiatric history
47733403
47887972
154570
GRCh38
Duplication
No
engchuan_15_ASD_discovery_controls-controlHABC_902844_902844
N/A
N/A
Control
No previous psychiatric history
45714903
45749938
35036
GRCh38
Deletion
No
engchuan_15_ASD_discovery_controls-controlHABC_902882_902882
N/A
N/A
Control
No previous psychiatric history
45714903
45751832
36930
GRCh38
Deletion
No
engchuan_15_ASD_discovery_controls-controlHABC_903002_903002
N/A
N/A
Control
No previous psychiatric history
45714903
45749938
35036
GRCh38
Deletion
No
kanduri_15_ASD_discovery_controls-control_split1592
N/A
N/A
Control
Control screened for DSM-IV mental disorders using the Composite International Diagnostic Interview and psychotic disorders using the research version of the Structured Clinical Interview for DSM-IV
44356194
44378173
21980
Unknown
Deletion
No
kanduri_15_ASD_discovery_controls-control_split858
N/A
N/A
Control
Control screened for DSM-IV mental disorders using the Composite International Diagnostic Interview and psychotic disorders using the research version of the Structured Clinical Interview for DSM-IV
44356194
44378173
21980
Unknown
Deletion
No
krumm_13_ASD_discovery_controls-control13926.s1
N/A
F
Control
Unaffected sibling from SSC quad family 13926. SRS score of 41.
45722367
45725636
3270
GRCh38
Deletion
No (not tested)
krumm_15_ASD_discovery_controls-control11236.s1
N/A
Male
Control
Unaffected sibling from the Simons Simplex Collection (SSC)
46118343
46123219
4877
GRCh38
Duplication
Yes
krumm_15_ASD_discovery_controls-control11330.s1
N/A
Female
Control
Unaffected sibling from the Simons Simplex Collection (SSC)
45722367
45725636
3270
GRCh38
Deletion
Yes
krumm_15_ASD_discovery_controls-control13036.s1
N/A
Female
Control
Unaffected sibling from the Simons Simplex Collection (SSC)
45207053
45294015
86963
GRCh38
Duplication
Yes
krumm_15_ASD_discovery_controls-control13303.s1
N/A
Male
Control
Unaffected sibling from the Simons Simplex Collection (SSC)
45722367
45725636
3270
GRCh38
Deletion
Yes
krumm_15_ASD_discovery_controls-control13800.s1
N/A
Female
Control
Unaffected sibling from the Simons Simplex Collection (SSC)
45311588
45316959
5372
GRCh38
Duplication
Yes
poultney_13_ASD_discovery_controls-control04C28818A
N/A
F
Control
NIMH Control (NIMH ID 61693)
45705861
45724059
18199
GRCh38
Deletion
Yes
poultney_13_ASD_discovery_controls-control05C43962
N/A
F
Control
NIMH Control (NIMH ID 74677)
45207052
45304799
97748
GRCh38
Duplication
No
sanders_11_ASD_discovery_controls-11023.s1
10.4
F
Control (matched sibling)
NA
NA
45722456
45749938
27483
GRCh38
Deletion
No
sanders_11_ASD_discovery_controls-11117.s1
7.1
F
Control (matched sibling)
NA
NA
43665240
43722171
56932
GRCh38
Deletion
No
sanders_11_ASD_discovery_controls-11193.s1
4.8
F
Control (matched sibling)
NA
NA
45708881
45751832
42952
GRCh38
Deletion
No
sanders_11_ASD_discovery_controls-11290.s1
13.4
F
Control (matched sibling)
NA
NA
43665240
43722171
56932
GRCh38
Deletion
No
sanders_11_ASD_discovery_controls-11330.s1
11.8
F
Control (matched sibling)
NA
NA
45714903
45749938
35036
GRCh38
Deletion
No
sanders_11_ASD_discovery_controls-11568.s1
16.7
F
Control (matched sibling)
NA
NA
45539574
45550333
10760
GRCh38
Deletion
No
sanders_11_ASD_discovery_controls-11941.s1
8.7
F
Control (matched sibling)
NA
NA
43665240
43682448
17209
GRCh38
Deletion
No
sanders_11_ASD_discovery_controls-12033.s1
12.2
M
Control (matched sibling)
NA
NA
43665240
43682448
17209
GRCh38
Deletion
No
sanders_11_ASD_discovery_controls-12281.s1
18.1
F
Control (matched sibling)
NA
NA
43665240
43730843
65604
GRCh38
Deletion
No
sanders_11_ASD_discovery_controls-12323.s1
4
F
Control (matched sibling)
NA
NA
43665240
43682448
17209
GRCh38
Deletion
No
sanders_11_ASD_discovery_controls-12582.s1
9.2
M
Control (matched sibling)
NA
NA
43665240
43722171
56932
GRCh38
Deletion
No
sanders_11_ASD_discovery_controls-12597.s1
5.3
F
Control (matched sibling)
NA
NA
43665240
43722171
56932
GRCh38
Deletion
No
sanders_11_ASD_discovery_controls-12603.s1
11.7
M
Control (matched sibling)
NA
NA
45714903
45749938
35036
GRCh38
Deletion
No
sanders_11_ASD_discovery_controls-12944.s1
4.8
M
Control (matched sibling)
NA
NA
43665240
43682448
17209
GRCh38
Deletion
No
sanders_11_ASD_discovery_controls-13015.s1
7.1
F
Control (matched sibling)
NA
NA
43665240
43682448
17209
GRCh38
Deletion
No
sanders_11_ASD_discovery_controls-13036.s1
10.2
F
Control (matched sibling)
NA
NA
45201727
45307515
105789
GRCh38
Duplication
No
sanders_11_ASD_discovery_controls-13303.s1
17.5
M
Control (matched sibling)
NA
NA
45714903
45749938
35036
GRCh38
Deletion
No
Cases
Patient ID
Validation Description
Primary Disorder Inheritence
Inheritence
Family Profile
Disease Segregation
Gene Content
Altered Gene Expression
brandler_18_ASD_replication_cases-caseAU3807302
No validation step reported
Paternal
ZMYND8
brandler_18_ASD_replication_cases-caseSSC00269
No validation step reported
Maternal
ZMYND8
davis_09_ASD_discovery_cases-AU019705
Unknown
Unknown
Unknown
WFDC13, SPINT4
engchuan_15_ASD_discovery_cases-case13056_663
Unknown
YWHAB,PABPC1L,TOMM34
engchuan_15_ASD_discovery_cases-case13057_673
Unknown
WFDC13,SPINT4,HNRNPA1P3,SPINT5P,WFDC3
engchuan_15_ASD_discovery_cases-case20109_1504002
Unknown
SPINT4,HNRNPA1P3,SPINT5P,WFDC3
engchuan_15_ASD_discovery_cases-case20159_4009001
Unknown
SPINT4,HNRNPA1P3,SPINT5P,WFDC3
engchuan_15_ASD_discovery_cases-case20188_1727001
Unknown
SPINT4,HNRNPA1P3,SPINT5P,WFDC3
engchuan_15_ASD_discovery_cases-case2163_1
Unknown
WFDC13,SPINT4,HNRNPA1P3,SPINT5P,WFDC3
engchuan_15_ASD_discovery_cases-case5270_3
Unknown
RNU7-173P,SRMP1,RNA5SP486,RNU7-92P,SULF2
engchuan_15_ASD_discovery_cases-case8463_202
Unknown
SPINT4,HNRNPA1P3,SPINT5P,WFDC3
engchuan_15_ASD_discovery_cases-case8587_210
Unknown
SPINT4,HNRNPA1P3,SPINT5P,WFDC3
engchuan_15_ASD_discovery_cases-case8638_201
Unknown
SPINT4,HNRNPA1P3,SPINT5P,WFDC3
krumm_13_ASD_discovery_cases-case11304.p1
Paternal
Simplex
Segregated
SLC13A3
krumm_13_ASD_discovery_cases-case11501.p1
Maternal
Simplex
Segregated
SPINT4
krumm_13_ASD_discovery_cases-case12473.p1
Maternal
Simplex
Segregated
SLC13A3
krumm_15_ASD_discovery_cases-case11193.p1
Illumina 1M
Paternal
Simplex
Segregated
SPINT4
krumm_15_ASD_discovery_cases-case11501.p1
Illumina 1M
Maternal
Simplex
Segregated
SPINT4
krumm_15_ASD_discovery_cases-case11537.p1
Illumina 1M
Maternal
Simplex
Segregated
SPINT4
krumm_15_ASD_discovery_cases-case12208.p1
Illumina 1MDuo
Maternal
Simplex
Segregated
SPINT4
krumm_15_ASD_discovery_cases-case13009.p1
1M-Duov3
Maternal
Simplex
Segregated
SPINT4
krumm_15_ASD_discovery_cases-case13082.p1
Illumina 1MDuo
Maternal
Simplex
Segregated
SPINT4
krumm_15_ASD_discovery_cases-case13120.p1
Illumina 1MDuo
Maternal
Simplex
Segregated
SPINT4
krumm_15_ASD_discovery_cases-case13303.p1
Illumina 1MDuo
Maternal
Simplex
Not segregated (CNV in unaffected sibling)
SPINT4
krumm_15_ASD_discovery_cases-case13586.p1
1M-Duov3
Maternal
Simplex
Segregated
SPINT4
marshall_08_ASD_discovery_cases-SK0258-004
qPCR, qmPCR
Unknown
NA
NA
RPL35AP,RNU6-497P,RNU6-563P,LINC01754,NCOA3
prasad_12_ASD_discovery_cases-case47173L
Unknown
Unknown
Unknown
CD40
sanders_11_ASD_discovery_cases-11193.p1
Paternal
Simplex (quad-proband matched)
Not segregated
SPINT4,HNRNPA1P3,SPINT5P,WFDC3
sanders_11_ASD_discovery_cases-11290.p1
Paternal
Simplex (quad-proband matched)
Not segregated
MYBL2
sanders_11_ASD_discovery_cases-11394.p1
Maternal
Simplex (trio)
NA
MYBL2
sanders_11_ASD_discovery_cases-11501.p1
Maternal
Simplex (quad-proband matched)
Not segregated
SPINT4,HNRNPA1P3,SPINT5P,WFDC3
sanders_11_ASD_discovery_cases-11537.p1
Maternal
Simplex (quad-proband matched)
Not segregated
WFDC13,SPINT4,HNRNPA1P3,SPINT5P,WFDC3
sanders_11_ASD_discovery_cases-11948.p1
Unknown
Simplex (quad-proband matched)
Not segregated
MYBL2
sanders_11_ASD_discovery_cases-12033.p1
Maternal
Simplex (quad-proband matched)
Not segregated
MYBL2
sanders_11_ASD_discovery_cases-12041.p1
Unknown
Simplex (quad-proband matched)
Not segregated
WFDC6,EPPIN-WFDC6,HSPD1P21,EPPIN
sanders_11_ASD_discovery_cases-12208.p1
Maternal
Simplex (trio)
NA
SPINT4,HNRNPA1P3,SPINT5P,WFDC3
sanders_11_ASD_discovery_cases-12281.p1
Maternal
Simplex (quad-proband matched)
Not segregated
MYBL2
sanders_11_ASD_discovery_cases-12404.p1
Maternal
Simplex (trio)
NA
sanders_11_ASD_discovery_cases-12423.p1
Maternal
Simplex (quad-proband unmatched)
Unknown
MYBL2
sanders_11_ASD_discovery_cases-12454.p1
Paternal
Simplex (trio)
NA
MYBL2
sanders_11_ASD_discovery_cases-12582.p1
Maternal
Simplex (quad-proband matched)
Not segregated
MYBL2
sanders_11_ASD_discovery_cases-12634.p1
Unknown
Simplex (trio)
NA
MYBL2
sanders_11_ASD_discovery_cases-12944.p1
Paternal
Simplex (quad-proband matched)
Not segregated
MYBL2
sanders_11_ASD_discovery_cases-13015.p1
Paternal
Simplex (quad-proband matched)
Not segregated
MYBL2
sanders_11_ASD_discovery_cases-13082.p1
Maternal
Simplex (quad-proband matched)
Not segregated
SPINT4,HNRNPA1P3,SPINT5P,WFDC3
sanders_11_ASD_discovery_cases-13083.p1
Unknown
Simplex (quad-proband matched)
Not segregated
WFDC6,EPPIN-WFDC6,HSPD1P21,EPPIN
sanders_11_ASD_discovery_cases-13120.p1
Maternal
Simplex (quad-proband matched)
Not segregated
SPINT4,HNRNPA1P3,SPINT5P,WFDC3
sanders_11_ASD_discovery_cases-13303.p1
Both parents
Simplex (quad-proband matched)
Not segregated
SPINT4,HNRNPA1P3,WFDC3
Controls
Patient ID
Validation Description
Primary Disorder Inheritence
Inheritence
Family Profile
Disease Segregation
Gene Content
Altered Gene Expression
brandler_18_ASD_replication_controls-controlSSC00272
No validation step reported
Maternal
ZMYND8
engchuan_15_ASD_discovery_controls-controlB928410_0067942587
Unknown
RPL27AP,GTSF1L,SGK2,MYBL2,L3MBTL1,IFT52
engchuan_15_ASD_discovery_controls-controlB983089_1007842465
Unknown
WFDC13,SPINT4,HNRNPA1P3,SPINT5P,WFDC3
engchuan_15_ASD_discovery_controls-controlHABC_900036_900036
Unknown
SPINT4,HNRNPA1P3,SPINT5P,WFDC3
engchuan_15_ASD_discovery_controls-controlHABC_900056_900056
Unknown
SPINT4,HNRNPA1P3,SPINT5P,WFDC3
engchuan_15_ASD_discovery_controls-controlHABC_900324_900324
Unknown
SPINT4,HNRNPA1P3,SPINT5P,WFDC3
engchuan_15_ASD_discovery_controls-controlHABC_900359_900359
Unknown
SPINT4,HNRNPA1P3,SPINT5P,WFDC3
engchuan_15_ASD_discovery_controls-controlHABC_900496_900496
Unknown
SPINT4,HNRNPA1P3,SPINT5P,WFDC3
engchuan_15_ASD_discovery_controls-controlHABC_900624_900624
Unknown
RN7SKP33,EYA2
engchuan_15_ASD_discovery_controls-controlHABC_901030_901030
Unknown
YWHAB,PABPC1L,TOMM34
engchuan_15_ASD_discovery_controls-controlHABC_901057_901057
Unknown
SPINT4,HNRNPA1P3,SPINT5P,WFDC3
engchuan_15_ASD_discovery_controls-controlHABC_901166_901166
Unknown
SPINT4,HNRNPA1P3,SPINT5P,WFDC3
engchuan_15_ASD_discovery_controls-controlHABC_902554_902554
Unknown
SPINT4,HNRNPA1P3,SPINT5P,WFDC3
engchuan_15_ASD_discovery_controls-controlHABC_902566_902566
Unknown
SPINT4,HNRNPA1P3,SPINT5P,WFDC3
engchuan_15_ASD_discovery_controls-controlHABC_902597_902597
Unknown
SPINT4,HNRNPA1P3,SPINT5P,WFDC3
engchuan_15_ASD_discovery_controls-controlHABC_902664_902664
Unknown
RNU7-173P,SRMP1,RNA5SP486,SULF2
engchuan_15_ASD_discovery_controls-controlHABC_902844_902844
Unknown
SPINT4,HNRNPA1P3,SPINT5P,WFDC3
engchuan_15_ASD_discovery_controls-controlHABC_902882_902882
Unknown
SPINT4,HNRNPA1P3,SPINT5P,WFDC3
engchuan_15_ASD_discovery_controls-controlHABC_903002_903002
Unknown
SPINT4,HNRNPA1P3,SPINT5P,WFDC3
kanduri_15_ASD_discovery_controls-control_split1592
Unknown
Intergenic CNV: nearest genes, SPINT4(dist=1859),WFDC3(dist=24674)
kanduri_15_ASD_discovery_controls-control_split858
Unknown
Intergenic CNV: nearest genes, SPINT4(dist=1859),WFDC3(dist=24674)
krumm_13_ASD_discovery_controls-control13926.s1
Maternal
Simplex
SPINT4
krumm_15_ASD_discovery_controls-control11236.s1
Illumina 1MDuo
Maternal
CD40
krumm_15_ASD_discovery_controls-control11330.s1
Illumina 1MDuo
Paternal
SPINT4
krumm_15_ASD_discovery_controls-control13036.s1
Illumina 1MDuo
Maternal
SEMG1,SEMG2,SLPI,MATN4
krumm_15_ASD_discovery_controls-control13303.s1
Illumina 1MDuo
Maternal
SPINT4
krumm_15_ASD_discovery_controls-control13800.s1
Omni2.5-4v1
Maternal
RBPJL
poultney_13_ASD_discovery_controls-control04C28818A
qPCR
Unknown
WFDC13,SPINT4
poultney_13_ASD_discovery_controls-control05C43962
Unknown
SEMG1,SEMG2,SLPI,MATN4
sanders_11_ASD_discovery_controls-11023.s1
Maternal
Simplex (quad)
NA
SPINT4,HNRNPA1P3,SPINT5P,WFDC3
sanders_11_ASD_discovery_controls-11117.s1
Unknown
Simplex (quad)
NA
MYBL2
sanders_11_ASD_discovery_controls-11193.s1
Paternal
Simplex (quad)
NA
SPINT4,HNRNPA1P3,SPINT5P,WFDC3
sanders_11_ASD_discovery_controls-11290.s1
Unknown
Simplex (quad)
NA
MYBL2
sanders_11_ASD_discovery_controls-11330.s1
Paternal
Simplex (quad)
NA
SPINT4,HNRNPA1P3,SPINT5P,WFDC3
sanders_11_ASD_discovery_controls-11568.s1
Unknown
Simplex (quad)
NA
EPPIN-WFDC6,HSPD1P21,EPPIN
sanders_11_ASD_discovery_controls-11941.s1
Unknown
Simplex (quad)
NA
MYBL2
sanders_11_ASD_discovery_controls-12033.s1
Maternal
Simplex (quad)
NA
MYBL2
sanders_11_ASD_discovery_controls-12281.s1
Unknown
Simplex (quad)
NA
GTSF1L,MYBL2
sanders_11_ASD_discovery_controls-12323.s1
Unknown
Simplex (quad)
NA
MYBL2
sanders_11_ASD_discovery_controls-12582.s1
Maternal
Simplex (quad)
NA
MYBL2
sanders_11_ASD_discovery_controls-12597.s1
Paternal
Simplex (quad)
NA
MYBL2
sanders_11_ASD_discovery_controls-12603.s1
Paternal
Simplex (quad)
NA
SPINT4,HNRNPA1P3,SPINT5P,WFDC3
sanders_11_ASD_discovery_controls-12944.s1
Paternal
Simplex (quad)
NA
MYBL2
sanders_11_ASD_discovery_controls-13015.s1
Paternal
Simplex (quad)
NA
MYBL2
sanders_11_ASD_discovery_controls-13036.s1
Maternal
Simplex (quad)
NA
SEMG1,SEMG2,RBPJL,SLPI,MATN4
sanders_11_ASD_discovery_controls-13303.s1
Both parents
Simplex (quad)
NA
SPINT4,HNRNPA1P3,SPINT5P,WFDC3
No Animal Model Data Available