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Relevance to Autism

Two de novo missense variants in the USH2A gene were identified in ASD probands from the Autism Sequencing Consortium (Neale et al., 2012) and the Simons Simplex Collection (Iossifov et al., 2014); one of these variants was later determined to be a postzygotic mosaic mutation (PZM) in Lim et al., 2017. A second non-synonymous PZM in this gene was identified in an ASD proband in Lim et al., 2017; comparison with a background set of 84,448 privately inherited variants demonstrated that this gene harbored more PZMs than expected based on background rates (/571 observed vs. /84,448 expected; hypergeometric P-value of 0.023). Biallelic variants in the USH2A gene have also been identified in individuals diagnosed with ASD (Xiong et al., 2019; Doan et al., 2019).

Molecular Function

This gene encodes a protein that contains laminin EGF motifs, a pentaxin domain, and many fibronectin type III motifs. The protein is found in the basement membrane, and may be important in development and homeostasis of the inner ear and retina. Mutations within this gene have been associated with Usher syndrome type IIa and retinitis pigmentosa.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Patterns and rates of exonic de novo mutations in autism spectrum disorders.
ASD
Support
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Autism spectrum disorder and comorbid neurodevelopmental disorders (ASD-NDDs): Clinical and genetic profile of a pediatric cohort
ASD
DD, ID
Support
Inherited and De Novo Genetic Risk for Autism Impacts Shared Networks.
ASD
Support
Recessive gene disruptions in autism spectrum disorder.
ASD
Support
Neurological Diseases With Autism Spectrum Disorder: Role of ASD Risk Genes.
ASD
Recent Recommendation
Rates, distribution and implications of postzygotic mosaic mutations in autism spectrum disorder.
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN935R001 
 missense_variant 
 c.4388T>C 
 p.Leu1463Ser 
 De novo 
  
 Simplex 
 GEN935R002 
 missense_variant 
 c.7643T>G 
 p.Met2548Arg 
 De novo 
  
 Simplex 
 GEN935R003 
 missense_variant 
 c.10042A>C 
 p.Ile3348Leu 
 De novo 
  
  
 GEN935R004a 
 stop_gained 
 c.12714T>G 
 p.Tyr4238Ter 
 Familial 
  
 Simplex 
 GEN935R004b 
 stop_gained 
 c.6224G>A 
 p.Trp2075Ter 
 Familial 
  
 Simplex 
 GEN935R005a 
 missense_variant 
 c.10931C>T 
 p.Thr3644Met 
 Familial 
 Maternal 
 Simplex 
 GEN935R005b 
 missense_variant 
 c.7616C>T 
 p.Pro2539Leu 
 Familial 
 Maternal 
 Simplex 
 GEN935R005c 
 missense_variant 
 c.4492C>G 
 p.Pro1498Ala 
 Familial 
 Paternal 
 Simplex 
 GEN935R006 
 frameshift_variant 
 c.10596_10597insAT 
 p.Tyr3533IlefsTer18 
 Familial 
 Maternal 
 Multiplex (monozygotic twins) 
 GEN935R007 
 frameshift_variant 
 c.2300del 
 p.Glu767GlyfsTer21 
 Familial 
 Maternal 
 Multiplex 
 GEN935R008a 
 missense_variant 
 c.10931C>T 
 p.Thr3644Met 
 Familial 
 Maternal 
  
 GEN935R008b 
 missense_variant 
 c.7616C>T 
 p.Pro2539Leu 
 Familial 
 Paternal 
  
 GEN935R008c 
 missense_variant 
 c.4492C>G 
 p.Pro1498Ala 
 Familial 
 Paternal 
  
 GEN935R009 
 synonymous_variant 
 c.9273A>G 
 p.Thr3091%3D 
 De novo 
  
  
 GEN935R010 
 missense_variant 
 c.4663G>A 
 p.Gly1555Ser 
 De novo 
  
 Multiplex 
 GEN935R011 
 missense_variant 
 c.3973A>G 
 p.Thr1325Ala 
 De novo 
  
 Simplex 
 GEN935R012 
 splice_region_variant 
 c.3158-8T>C 
  
 De novo 
  
 Simplex 
 GEN935R013 
 frameshift_variant 
 c.1479dup 
 p.Tyr494LeufsTer4 
 De novo 
  
  
 GEN935R014 
 missense_variant 
 c.565C>T 
 p.Arg189Cys 
 De novo 
  
  
 GEN935R015a 
 missense_variant 
 c.11978G>A 
 p.Gly3993Asp 
 Familial 
 Maternal 
  
 GEN935R015b 
 missense_variant 
 c.11146C>A 
 p.Gln3716Lys 
 Familial 
 Paternal 
  
 GEN935R016 
 splice_site_variant 
 c.15297+1G>C 
  
 Familial 
 Maternal 
 Multiplex 
 GEN935R017 
 splice_site_variant 
 c.2809+1G>C 
  
 Familial 
 Paternal 
 Multiplex 
 GEN935R018 
 frameshift_variant 
 c.1111_1112del 
 p.Ile371PhefsTer3 
 Familial 
 Paternal 
 Multiplex (monozygotic twins) 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
1
Duplication
 44
 
1
Duplication
 1
 
1
Duplication
 1
 
1
Deletion
 2
 
1
Deletion-Duplication
 16
 
1
Duplication
 2
 

No Animal Model Data Available

No PIN Data Available
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