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1q41CNV Type: Deletion-Duplication


Largest CNV size: 99982 bp

Statistics Box:
Number of Reports: 16



Summary Information

Summary statement in development

Additional Locus Information

Genome browsers

USCS Symbol             NCBI Symbol

Decipher

            Decipher Symbol

References

Major Reports

Title
Author, Year
Report Class
CNV Type
Autism-specific copy number variants further implicate the phosphatidylinositol signaling pathway and the glutamatergic synapse in the etiology of ...
Deletion
An evidence-based approach to establish the functional and clinical significance of copy number variants in intellectual and developmental disabili...
Deletion-Duplication
Excess of rare, inherited truncating mutations in autism.
Deletion-Duplication
Detection of clinically relevant copy-number variants by exome sequencing in a large cohort of genetic disorders.
Deletion
Targeted resequencing of 358 candidate genes for autism spectrum disorder in a Chinese cohort reveals diagnostic potential and genotype-phenotype c...
Duplication
Cross-Disorder Analysis of Genic and Regulatory Copy Number Variations in Bipolar Disorder
Deletion

Minor Reports

Title
Author, Year
Report Class
CNV Type
Multiple recurrent de novo CNVs, including duplications of the 7q11.23 Williams syndrome region, are strongly associated with autism.
Deletion-Duplication
Use of array CGH to detect exonic copy number variants throughout the genome in autism families detects a novel deletion in TMLHE.
Deletion-Duplication
A discovery resource of rare copy number variations in individuals with autism spectrum disorder.
Duplication
Transmission disequilibrium of small CNVs in simplex autism.
Duplication
Identification of small exonic CNV from whole-exome sequence data and application to autism spectrum disorder.
Deletion-Duplication
Identification of risk genes for autism spectrum disorder through copy number variation analysis in Austrian families.
Duplication
Large-scale discovery of novel genetic causes of developmental disorders.
Duplication
Performance of case-control rare copy number variation annotation in classification of autism.
Deletion-Duplication
The complex behavioral phenotype of 15q13.3 microdeletion syndrome.
Deletion
Copy number variation analysis of patients with intellectual disability from North-West Spain.
Deletion-Duplication

Cases

Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
 celestino-soper_11_ASD_discovery_cases
 ASD probands from Simons Simplex Collection (SSC) trios. 90 of the probands in this study were also used in the Sanders et al. 2011 CNV report.
 99
 ASD
 
 87.88% Male
 9514
 2
 2
 4
 cusco_09_ASD_discovery_cases
 74 children followed in neurology clinic, 22 institutionalized mentally retarded adults with confirmed diagnosis of ASD
 96
 ASD
 
 87.5% Male
 99982
 1
 0
 1
 cusco_09_ASD_replication_cases
 Replication cohort of ASD patients
 215
 ASD
 
 
 99982
 0
 0
 0
 egger_14_ASD_discovery_cases
 ASD probands from Austria (71 simplex, 2 multiplex) recruited from the catchment area of Styria using three recruitment sites (Institute of Human Genetics, Medical University of Graz, Club Libelle, Center for Autism, Styria, and Children's Hospital, University Hospital Graz).
 73
 Diagnosis of ASD made using ADOS and ADI-R according to DSM-IV or DSM-V categories
 N/A
 80.82% Male
 25154
 0
 1
 1
 engchuan_15_ASD_discovery_cases
 Samples from the Autism Genome Project (AGP)
 1892
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 N/A
 85.78% Male
 413441
 3
 4
 7
 fitzgerald_14_ASD/DD/ID_discovery_cases
 Children recruited through all 24 regional genetics services of the UK National Health Service and Republic of Ireland as part of the Deciphering Developmental Disorders Study
 1133
 Cases affected by severe, undiagnosed developmental disorders; most common phenotypes include developmental delay, intellectual disability, specific learning disability, autism, seizures, microcephaly, and dysmorphic features.
 Median age, 5.5 years
 N/A
 157037
 0
 1
 1
 kaminsky_11_DD/ID/ASD_discovery_cases
 Cases from the International Standards for Cytogenomic Arrays (ISCA) consortium
 15749
 Unexplained developmental delay, intellectual disability, dysmorphic features, multiple congenital anomalies, autism spectrum disorders, or clinical features suggestive of a chromosomal syndrome
 NA
 NA
 6797307
 5
 1
 6
 krumm_13_ASD_discovery_cases
 Probands from quad families ascertained as part of the Simons Simplex Collection (SSC); CNVs detected using data from four previously published exome sequencing studies (O'Roak et al., 2011; Iossifov et al., 2012; O'Roak et al., 2012; Sanders et al., 2012)
 411
 Diagnosis of ASD. Social Responsiveness Scale (SRS) used as a quantitative measure of social deficits
 N/A
 81.265% Male
 11657
 0
 1
 1
 krumm_15_ASD_discovery_cases
 Probands from the Simons Simplex Collection
 2377
 Diagnosis of ASD
 N/A
 N/A
 26955
 1
 1
 2
 kushima_22_SCZ_discovery_cases
 Japanese schizophrenia probands evaluated for copy number variation from an initial cohort of 3,111 probands before quality control.
 3014
 Cases diagnosed with schizophrenia (SCZ) according to DSM-5 criteria.
 Median age, 45 yrs.
 53.5% Male
 4331513
 1
 0
 1
 pfundt_16_nonNDD_discovery_cases
 Subset of a cohort of 2,603 patients affected by genetic disorders for which exome seqeuncing was performed in a diagnostic setting
 1430
 Craniofacial anomalies (n=31), disorders of sexual development (n=38), immunodeficiency (n=24), metabolic disorders (n=34), hereditary cancer (n=74), renal disorders (n=56), complex phenotypes (n=183), mitochondrial disorders (n=142), muscle disorders (n=171), deafness (n=223), movement disorders (n=217), or blindness (n=237)
 N/A
 N/A
 87823
 1
 0
 1
 poultney_13_ASD_discovery_cases
 ASD cases of European ancestry from AGRE retained after filtering (original cohort size of 432 cases)
 299
 Cases diagnosed with ASD
 N/A
 79.86% Male (before filtering)
 11661
 1
 2
 3
 prasad_12_ASD_discovery_cases
 Unrelated ASD cases recruited from three Canadian sites (Hospital for Sick Children, McMaster University, and Memorial University of Newfoundland); the majority of cases had been previously genotyped with results published in Marshall et al., 2008 and Pinto et al., 2010. 20 cases from initial cohort of 696 were excluded from further analysis (due to CNVs > 5 Mb).
 676
 Diagnosis of ASD based on meeting criteria on ADI-R and/or ADOS
 NA
 82.84% Male
 48890
 0
 1
 1
 quintela_17_DD/ID_discovery_cases
 Galician (NW Spain) patients recruited from the Complexo Hospitalario Universitario de Santiago de Compostela and referred to the Fundacion Publica Galega de Medicina Xenomica for genetic study
 573
 All participants had a clinical diagnosis of idiopathic intellectual disability (ID) or global developmental delay (DD) with or without another medical condition [e.g. autism spectrum disorder (ASD), attention deficit hyperactivity disorder (ADHD), epilepsy, dysmorphic features, and/or congenital anomalies]
 Range, 3 months-18 years
 60.38% Male
 2507991
 1
 1
 2
 sanders_11_ASD_discovery_cases
 Autistic probands from the Simons Simplex Collection (SSC). 872 probands in quartet families, 272 probands in trios.
 1124
 ASD diagnosis: 89.5% autism; 8.5% PDD-NOS, 2% Asperger syndrome. Mean full-scale IQ 85.1 1.5 (mean verbal IQ, 81.9 1.7; mean non-verbal IQ, 88.4 1.4)
 Mean, 9.1 yrs.
 86.1% Male
 75315
 13
 5
 18
 zhou_19_ASD_discovery_cases
 ASD probands from families recruited from training centers in Beijing and Tsingdao, China
 539
 Cases were diagnosed for ASD by ADI-R and ADOS
 4.92 1.20 years
 87.38% Male
 32000
 0
 1
 1
 ziats_16_DD/ID/ADHD/ASD_discovery_cases
 Patients with 15q13.3 microdeletions spanning at least BP4-BP5 identified retrospectively by review of CMA results performed in the Baylor Medical Genetics Laboratory or Signature Genomics Laboratories (prior to its closure in 2014).
 18
 Original reasons for referral of cases included developmental delay (DD; n=5), intellectual disability (ID; n=9), ADHD (n=4), ASD (n=3), and depression (n=2). Cognitive and behavioral testing involved usage of the Differential Ability Scales-II; the Autism Diagnostic Interview-Revised (ADI-R); the Autism Diagnostic Observation Schedule, Second Edition (ADOS-2); the Adaptive Behavior Assessment System, Second Edition (ABAS-II); and the Behavioral Assessment for Children, Second Edition (BASC-2).
 Mean age, 14.0 yrs.
 77.78% Male
 757152
 1
 0
 1

Controls

Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
 cusco_09_ASD_discovery_controls
 Control individuals matched for population ancestry
 52
 Control
 
 51.9% Male
 99982
 0
 0
 0
 cusco_09_ASD_replication_controls
 Replication control cohort
 120
 Control
 
 
 99982
 0
 0
 0
 egger_14_ASD_discovery_controls
 CNV data from POPGEN (n=1,123) and the Ottawa Heart Institute (n=1,234)
 2357
 Control
 N/A
 N/A
 0
 0
 0
 0
 engchuan_15_ASD_discovery_controls
 Platform-matched controls from three large studies: SAGE (Study of Addiction Genetics and Environment), Ontario Colorectal Cancer study, and HABC (Health Aging and Body Composition)
 2342
 Controls; subjects had no previous psychiatric history
 N/A
 46.67% Male
 314283
 5
 4
 9
 kaminsky_11_DD/ID/ASD_discovery_controls
 Controls from the International Standards for Cytogenomic Arrays (ISCA) consortium
 10118
 Controls
 NA
 NA
 NA
 NA
 NA
 NA
 kanduri_15_ASD_discovery_controls
 Unrelated Finnish samples from the cohort of Health 2000 survey from an initial sample of 288 individuals following quality control
 269
 Controls screened for DSM-IV mental disorders using the Composite International Diagnostic Interview and psychotic disorders using the research version of the Structured Clinical Interview for DSM-IV
 N/A
 N/A
 7092
 1
 1
 2
 krumm_13_ASD_discovery_controls
 Unaffected siblings of ASD probands from quad families ascertained as part of the Simons Simplex Collection (SSC); CNVs detected using data from four previously published exome sequencing studies (O'Roak et al., 2011; Iossifov et al., 2012; O'Roak et al., 2012; Sanders et al., 2012)
 411
 Control (unaffected siblings of ASD probands). Social Responsiveness Scale (SRS) used as a quantitative measure of social deficits
 N/A
 46.47% Male
 11657
 0
 1
 1
 krumm_15_ASD_discovery_controls
 Unaffected siblings from quad families from the Simons Simplex Collection
 1786
 Control
 N/A
 N/A
 0
 0
 0
 0
 kushima_22_ASD/BPD/SCZ_discovery_controls
 Psychiatrically normal control individuals selected from the general population evaluated for copy number variation from an initial cohort of 2,713 control individuals before quality control.
 2671
 Controls were psychiatrically normal and had no history of mental disorders based on responses to questionnaires or self-reporting.
 Median age, 36 yrs.
 47.8% Male
 0
 0
 0
 0
 nord_11_ASD_discovery_controls
 Samples from 367 total control individuals (319 European American, 48 African American) used to test for differences in rare CNV prevalence compared with autism cases
 123
 Controls (no history of psychiatric symptoms by self-report)
 30 yrs.
 
 53055
 0
 1
 1
 poultney_13_ASD_discovery_controls
 Controls matched for European ancestry from NIMH and CEPH retained after filtering (original cohort size of 379 controls)
 260
 Control
 N/A
 47.49% Male (before filtering)
 319772
 1
 2
 3
 prasad_12_ASD_discovery_controls
 PDx controls [1000 DNA samples from reportedly healthy donors (50.2% male) from BioServe (Beltsville, MD)] and 4139 in-house controls previously reported in Krawcak et al. 2006, Stewart et al. 2009, and Bierut et al. 2010. CNVs identified in controls were used to define rare ASD-specific CNVs.
 5139
 Control
 NA
 NA (PDx controls 50.2% male)
 48890
 0
 0
 0
 sanders_11_ASD_discovery_controls
 Matched siblings of autistic probands from the Simons Simplex Collection (SSC).
 872
 Controls
 Mean, 10.0 yrs.
 
 29168
 7
 4
 11
 zhou_19_ASD_discovery_controls
 Samples from blood donors at donation stations in Beijing, China (note: CNVs identified in controls not reported in this study)
 512
 Controls were screened for ASD by AQ measurement (score < 32) and self-reported to be negative for personal or family history of neurological disorders or psychiatric illness related to ASD and adverse pregnancy history
 29.77 9.12 years
 76.17% Male
 N/A
 N/A
 N/A
 N/A

Cases

Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
 celestino-soper_11_ASD_discovery_cases
 
 aCGH
  Agilent 1M
 ADM-2
 Agilent Feature Extraction v10.7.3.1, Agilent DNA Analytics v4.0.76
 None
 cusco_09_ASD_discovery_cases
  Spanish
 aCGH
  BAC array containing 5442 large insert DNA fragments
 PennCNV
 CNV partition
 MLPA, aCGH, array SNP
 cusco_09_ASD_replication_cases
 
 MLPA
  MLPA panel containing probes targeting CNVs identified in discovery
 
 
 
 egger_14_ASD_discovery_cases
  68 European, 2 Asian, 1 African, 1 Turkish, 1 Egyptian
 Array SNP
  Affymetrix 6.0
 Birdsuite, iPattern, Affymetrix Genotyping Console
 
 None
 engchuan_15_ASD_discovery_cases
  Caucasian
 Solid phase hybridization
  Illumina 1M
 
 
 None
 fitzgerald_14_ASD/DD/ID_discovery_cases
  UK and Ireland
 aCGH, WES
  Agilent 2x1M, Agilent Exome+
 
 Cnsolidate, CoNVex
 None
 kaminsky_11_DD/ID/ASD_discovery_cases
  NA
 aCGH
  Agilent 44K, Agilent 105K
 
 Feature Extraction, DNA Analytics
 FISH, qPCR, MLPA, aCGH, standard G-banded chromosome analysis
 krumm_13_ASD_discovery_cases
  N/A
 WES
  Whole exome sequencing platforms used in four recent publications (O'Roak et al., 2011; Sanders et al., 2012; O'Roak et al., 2012, and Iossifov et al., 2012)
 DNACopy, CGHCall
 CoNIFER
 None
 krumm_15_ASD_discovery_cases
  N/A
 WES
 
 CoNIFER, XHMM
 
 Solid phase hybridization (Illumina 1M, 1 M Duo, or Omni 2.5)
 kushima_22_SCZ_discovery_cases
  Japan
 aCGH
  NimbleGen 720K Whole-Genome Tiling, Agilent SurePrint G3 Human CGH 400K
 Fast Adaptive States Segmentation Technique 2
 BioDiscovery Nexus Copy Number v.9.0
 qRT-PCR
 pfundt_16_nonNDD_discovery_cases
  N/A
 WES
  Solid5500xl, IlluminaHiSeq2000
 
 CoNIFER
 MLPA, MAQ
 poultney_13_ASD_discovery_cases
  European
 WES
  Agilent SureSelect Human All Exon v.2
 XHMM
 
 None
 prasad_12_ASD_discovery_cases
  Canada
 aCGH
  Agilent 1M
 ADM-2, DNAcopy (R Bioconductor)
 DNA Analytics v4.0.85 (Agilent), DNAcopy
 None
 quintela_17_DD/ID_discovery_cases
  North West Spain
 Array SNP
  Affymetrix Cytogenetics Whole-Genome 2M SNP array, Affymetrix CytoScan HD
 
 Affymetrix ChAS v.1.2.2
 None
 sanders_11_ASD_discovery_cases
  White non-Hispanic, 74.5%; mixed, 9.3%, Asian, 4.3%, White Hispanic, 4.0%, African-American, 3.8%; other, 4.2&
 Solid phase hybridization
  Illumina 1M v1, Illumina 1M v3
 PennCNV, QuantiSNP, GNOSIS
 
 
 zhou_19_ASD_discovery_cases
  Han Chinese
 Targeted exome sequencing
  Roche NimbleGen SeqCap EZ Library, Illumina HiSeq 2500
 
 XHMM v.1.0
 qPCR
 ziats_16_DD/ID/ADHD/ASD_discovery_cases
  N/A
 CMA
 
 
 
 None

Controls

Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
  cusco_09_ASD_discovery_controls
  Spanish
  aCGH
  BAC array containing 5442 large insert DNA fragments
 
 
 
  cusco_09_ASD_replication_controls
 
  MLPA
  MLPA panel containing probes targeting CNVs identified in discovery
 
 
 
  egger_14_ASD_discovery_controls
  European
  N/A
  N/A
 
 
 
  engchuan_15_ASD_discovery_controls
  Caucasian
  Solid phase hybridization
  Illumina 1M
 
 
  None
  kaminsky_11_DD/ID/ASD_discovery_controls
  NA
  aCGH
  Agilent 44K, Agilent 105K
 
  Feature Extraction, DNA Analytics
 
  kanduri_15_ASD_discovery_controls
  Finnish
  Solid phase hybridization
  Illumina Infinium HD Human610-Quad BeadChip
  QuantiSNP, PennCNV
  Illumina BeadStudio
  None
  krumm_13_ASD_discovery_controls
  N/A
  WES
  Whole exome sequencing platforms used in four recent publications (O'Roak et al., 2011; Sanders et al., 2012; O'Roak et al., 2012, and Iossifov et al., 2012)
  DNACopy, CGHCall
  CoNIFER
  None
  krumm_15_ASD_discovery_controls
  N/A
  WES
 
  CoNIFER, XHMM
 
  None
  kushima_22_ASD/BPD/SCZ_discovery_controls
  Japan
  aCGH
  NimbleGen 720K Whole-Genome Tiling, Agilent SurePrint G3 Human CGH 400K
  Fast Adaptive States Segmentation Technique 2
  BioDiscovery Nexus Copy Number v.9.0
  qRT-PCR
  nord_11_ASD_discovery_controls
 
  aCGH
  NimbleGen HD2
  Sliding-window algorithm, ~10 kb minumum size threshold
 
  None
  poultney_13_ASD_discovery_controls
  European
  WES
  Agilent SureSelect Human All Exon v.2
  XHMM
 
  None
  prasad_12_ASD_discovery_controls
  NA
  aCGH
  Agilent 1M
  ADM-2, DNAcopy (R Bioconductor)
  DNA Analytics v4.0.85 (Agilent), DNAcopy
 
  sanders_11_ASD_discovery_controls
 
  Solid phase hybridization
  Illumina 1M v1 or Illumina 1M v3
  PennCNV, QuantiSNP, GNOSIS
 
 
  zhou_19_ASD_discovery_controls
  Han Chinese
  Targeted exome sequencing
  Roche NimbleGen SeqCap EZ Library, Illumina HiSeq 2500
 
  XHMM v.1.0
 

Cases

Patient ID
Author, Year
Age
Gender
Primary Diagnosis
Clinical Profile
Cognitive Profile
CNV Start
CNV End
CNV Size
Genome Build
Type Method
Validation
  celestino-soper_11_ASD_discovery_cases-11030
 NA
 M
 ASD
 NA
 NA
 222650362
 222650785
  424
 GRCh38
 Duplication
 No
  celestino-soper_11_ASD_discovery_cases-11303
 NA
 M
 ASD
 NA
 NA
 222693734
 222703248
  9515
 GRCh38
 Duplication
 No
  celestino-soper_11_ASD_discovery_cases-11399
 NA
 M
 ASD
 NA
 NA
 215083156
 215083271
  116
 GRCh38
 Deletion
 No
  celestino-soper_11_ASD_discovery_cases-11455
 NA
 M
 ASD
 NA
 NA
 222617780
 222618527
  748
 GRCh38
 Deletion
 No
  cusco_09_ASD_discovery_cases-AUT186
 NA
 M
 PDD
 Dysmorphism, retrognatia
 Mild MR
 221401766
 221501748
  99982
 Unknown
 Deletion
 Yes
  egger_14_ASD_discovery_cases-caseA86
 N/A
 N/A
 ASD
 CNV: high stringency genic CNV call (2 or more algorithms), with no overlapping calls in 2,357 POPGEN and OHI controls, and <50% overlap in DGV.
 
 219914705
 219939858
  25154
 GRCh38
 Duplication
 No
  engchuan_15_ASD_discovery_cases-case13275_2543
 N/A
 N/A
 ASD
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 
 221269233
 221360008
  90776
 GRCh38
 Duplication
 No
  engchuan_15_ASD_discovery_cases-case14082_1440
 N/A
 N/A
 ASD
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 
 219845851
 219947627
  101777
 GRCh38
 Duplication
 No
  engchuan_15_ASD_discovery_cases-case4365_1
 N/A
 N/A
 ASD
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 
 223445425
 223476131
  30707
 GRCh38
 Duplication
 No
  engchuan_15_ASD_discovery_cases-case4440_1
 N/A
 N/A
 ASD
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 
 216086122
 216144679
  58558
 GRCh38
 Deletion
 No
  engchuan_15_ASD_discovery_cases-case6367_5
 N/A
 N/A
 ASD
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 
 217226057
 217289582
  63526
 GRCh38
 Deletion
 No
  engchuan_15_ASD_discovery_cases-case8474_202
 N/A
 N/A
 ASD
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 
 217422005
 217835446
  413442
 GRCh38
 Deletion
 No
  engchuan_15_ASD_discovery_cases-case8556_201
 N/A
 N/A
 ASD
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 
 219838194
 219908808
  70615
 GRCh38
 Duplication
 No
  fitzgerald_14_ASD/DD/ID_discovery_cases-case000017
 N/A
 N/A
 N/A
 Clinical profile N/A; CNV from Supplementary Table S23
 N/A
 217273420
 217430457
  157038
 GRCh38
 Duplication
 No
  kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00000752
 NA
 NA
 Developmental delay/intellectual disability/ASD
 Clinical profile NA
 Cognitive profile NA
 215206760
 222004068
  6797309
 GRCh38
 Deletion
 Yes
  kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00000857
 NA
 NA
 Developmental delay/intellectual disability/ASD
 Clinical profile NA
 Cognitive profile NA
 218321722
 218961624
  639903
 GRCh38
 Deletion
 Yes
  kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00001718
 NA
 NA
 Developmental delay/intellectual disability/ASD
 Clinical profile NA
 Cognitive profile NA
 217452423
 218818361
  1365939
 GRCh38
 Deletion
 Yes
  kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00002314
 NA
 NA
 Developmental delay/intellectual disability/ASD
 Clinical profile NA
 Cognitive profile NA
 216396695
 217549806
  1153112
 GRCh38
 Deletion
 Yes
  kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00002475
 NA
 NA
 Developmental delay/intellectual disability/ASD
 Clinical profile NA
 Cognitive profile NA
 215447347
 221971832
  6524486
 GRCh38
 Duplication
 Yes
  kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00005210
 NA
 NA
 Developmental delay/intellectual disability/ASD
 Clinical profile NA
 Cognitive profile NA
 216518607
 219827290
  3308684
 GRCh38
 Deletion
 Yes
  krumm_13_ASD_discovery_cases-case13890.p1
 N/A
 F
 ASD
 ASD proband from SSC quad family 13890. SRS score of 82.
 Full-scale IQ (FSIQ) score of 37.
 219915448
 219927105
  11658
 GRCh38
 Duplication
 No (not tested)
  krumm_15_ASD_discovery_cases-case11470.p1
 N/A
 Male
 ASD
 Proband from the Simons Simplex Collection (SSC). Family type: Quad
 
 220754946
 220781901
  26956
 GRCh38
 Deletion
 Yes
  krumm_15_ASD_discovery_cases-case13027.p1
 N/A
 Male
 ASD
 Proband from the Simons Simplex Collection (SSC). Family type: Trio
 
 221333536
 221336387
  2852
 GRCh38
 Duplication
 Yes
  kushima_22_SCZ_discovery_cases-caseSCZ3587
 NA
 NA
 Schizophrenia
 Diagnosis of schizophrenia according to DSM-5 criteria.
 
 216747858
 221079370
  4331513
 GRCh38
 Deletion
 Yes
  pfundt_16_nonNDD_discovery_cases-case39
 N/A
 N/A
 Non-NDD
 Disease cohort: deafness. Description: USH2A deletion
 
 215790058
 215877881
  87824
 GRCh38
 Deletion
 Yes
  poultney_13_ASD_discovery_cases-case00HI1739A
 N/A
 F
 ASD
 ASD case from AGRE (AGRE ID AU066204; NDAR ID NDAR_INVPW001PZX)
 
 219915447
 219927107
  11661
 GRCh38
 Duplication
 No
  poultney_13_ASD_discovery_cases-case05HI3730A
 N/A
 M
 ASD
 ASD case from AGRE (AGRE ID AU1333302; NDAR ID NDAR_INVXN619JT9)
 
 219982770
 219984259
  1490
 GRCh38
 Deletion
 No
  poultney_13_ASD_discovery_cases-case99HI1075A
 N/A
 M
 ASD
 ASD case from AGRE (AGRE ID AU024105; NDAR ID NDAR_INVFC762XU2)
 
 219915447
 219927107
  11661
 GRCh38
 Duplication
 No
  prasad_12_ASD_discovery_cases-case85170L
 NA
 M
 ASD
 Diagnosis of ASD based on meeting criteria on ADI-R and/or ADOS. Novel CNV
 
 219412391
 219461280
  48890
 Unknown
 Duplication
 No
  quintela_17_DD/ID_discovery_cases-caseID_295
 15 yrs.
 M
 Intellectual disability
 Joint hypermobility. Incomplete parental clinical history.
 Mild intellectual disability
 218259541
 220767531
  2507991
 GRCh38
 Deletion
 No
  quintela_17_DD/ID_discovery_cases-caseID_619
 11 yrs.
 M
 Intellectual disability
 Short stature
 Intellectual disability
 217833007
 218028121
  195115
 GRCh38
 Duplication
 No
  sanders_11_ASD_discovery_cases-11033.p1
 6.8
 M
 Autism
 NA
 Full-scale IQ, 59; non-verbal IQ, 69; verbal IQ, 56
 223455088
 223468098
  13011
 GRCh38
 Duplication
 No
  sanders_11_ASD_discovery_cases-11054.p1
 13
 M
 Autism
 NA
 Full-scale IQ, 82; non-verbal IQ, 83; verbal IQ, 84
 215353359
 215378323
  24965
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-11132.p1
 4.3
 M
 Autism
 NA
 Full-scale IQ, 47; non-verbal IQ, 49; verbal IQ, 32
 218006005
 218015509
  9505
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-11289.p1
 6
 M
 Autism
 NA
 Full-scale IQ, 82; non-verbal IQ, 98; verbal IQ, 62
 218909718
 218915236
  5519
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-11289.p1
 6
 M
 Autism
 NA
 Full-scale IQ, 82; non-verbal IQ, 98; verbal IQ, 62
 217732477
 217798638
  66162
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-11470.p1
 8.7
 M
 Autism
 NA
 Full-scale IQ, 90; non-verbal IQ, 95; verbal IQ, 76
 220753502
 220782670
  29169
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-11538.p1
 5.8
 M
 Autism
 NA
 Full-scale IQ, 88; non-verbal IQ, 93; verbal IQ, 85
 214464465
 214477437
  12973
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-12160.p1
 8.3
 M
 Autism
 NA
 Full-scale IQ, 100; non-verbal IQ, 108; verbal IQ, 86
 219872312
 219947627
  75316
 GRCh38
 Duplication
 No
  sanders_11_ASD_discovery_cases-12229.p1
 10.1
 M
 Autism
 NA
 Full-scale IQ, 84; non-verbal IQ, 89; verbal IQ, 80
 214464976
 214474285
  9310
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-12286.p1
 4.8
 M
 Autism
 NA
 Full-scale IQ, 108; non-verbal IQ, 104; verbal IQ, 111
 219834682
 219908808
  74127
 GRCh38
 Duplication
 No
  sanders_11_ASD_discovery_cases-12304.p1
 14.6
 M
 Autism
 NA
 Full-scale IQ, 83; non-verbal IQ, 83; verbal IQ, 77
 218203770
 218224238
  20469
 GRCh38
 Duplication
 No
  sanders_11_ASD_discovery_cases-12395.p1
 5.2
 M
 Autism
 NA
 Full-scale IQ, 85; non-verbal IQ, 91; verbal IQ, 81
 214422620
 214425611
  2992
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-12396.p1
 8.3
 M
 Autism
 NA
 Full-scale IQ, 99; non-verbal IQ, 98; verbal IQ, 101
 215687122
 215688415
  1294
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-12558.p1
 10.5
 M
 Autism
 NA
 Full-scale IQ, 81; non-verbal IQ, 95; verbal IQ, 51
 218006005
 218015509
  9505
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-12605.p1
 16.3
 M
 Autism
 NA
 Full-scale IQ, 120; non-verbal IQ, 108; verbal IQ, 136
 215687122
 215688415
  1294
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-12796.p1
 5.2
 M
 Autism
 NA
 Full-scale IQ, 68; non-verbal IQ, 72; verbal IQ, 68
 223458703
 223471914
  13212
 GRCh38
 Duplication
 No
  sanders_11_ASD_discovery_cases-13304.p1
 6.9
 M
 Autism
 NA
 Full-scale IQ, 74; non-verbal IQ, 61; verbal IQ, 111
 214420512
 214425611
  5100
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-13337.p1
 5.1
 M
 Autism
 NA
 Full-scale IQ, 125; non-verbal IQ, 107; verbal IQ, 110
 220753502
 220782670
  29169
 GRCh38
 Deletion
 No
  zhou_19_ASD_discovery_cases-caseAU052603
 N/A
 N/A
 ASD
 Diagnosis of ASD by ADI-R and ADOS.
 
 216046381
 216078412
  32032
 GRCh38
 Duplication
 Yes
  ziats_16_DD/ID/ADHD/ASD_discovery_cases-case6
 15 yrs.
 F
 ID
 Original reason for referral: mild intellectual disability. Developmental milestones: sitting at 11 months, crawling at 14 months, walking at 17 months; first word at 40 months, 2 word sentences at 60 months. ADOS Summary: not autism or ASD. ADI-R summary: not autism/ASD; Total A score of 16 (cutoff 10), Total B verbal score of 15 (cutoff 8), Total C score of 0 (cutoff 3), Total D score of 4 (cutoff 1). Strictest Diagnosis of Autism (positive on ADOS and ADI-R): no. Adaptive Behavior Assessment System, Second Edition (ABAS-II) results: GAC Composite Score of 78 (7th %ile, borderline qualitative range); Conceptual Composite Score of 84 (14th %ile, below average qualitative range); Social Composite Score of 84 (14th %ile, below average qualitative range); Practical Composite Score of 82 (12th %ile, below average qualitative range). Behavioral Assessment for Children, Second Edition (BASC-2) results: Externalizing T-score of 46 (%ile rank 39); Internalizing T score of 41 (%ile rank 17); Behavioral T score of 51 (%ile rank 61); Adaptive skills T score of 33 (%ile rank 5); Hyperactivity T score of 51 (%ile rank 64); Aggression T score of 44 (%ile rank 30); Conduct problems T score of 44 (%ile rank 34); Anxiety T score of 49 (%ile rank 50); Depression T score of 41 (%ile rank 18); Somatization T score of 37 (%ile rank 4); Atypicality T score of 45 (%ile rank 42); Withdrawal T score of 68 (%ile rank 94); Attention Problems T score of 57 (%ile rank 76); Adaptibility T score of 50 (%ile rank 47); Social skills T score of 35 (%ile rank 8); Leadership T score of 32 (%ile rank 4); Activities of daily living T score of 33 (%ile rank 6); Functional communication T score of 29 (%ile rank 3). History of seizures: no. History of hypotonia: yes. Growth parameters: height 6th %ile (Z score -1.52), weight 35th %ile (Z score -0.37), OFC 27th %ile (Z score -0.6). Family history: unknown (adopted). 15q13.3 microdeletion breakpoints: BP4-BP5.
 Differential Ability Scales-II results: VRIQ, 35; NVRIQ, 53; FSRIQ, 39.
 222581749
 223338901
  757153
 GRCh38
 Deletion
 No

Controls

Patient ID
Author, Year
Age
Gender
Primary Diagnosis
Clinical Profile
Cognitive Profile
CNV Start
CNV End
CNV Size
Genome Build
Type Method
Validation
  engchuan_15_ASD_discovery_controls-controlB308771_1007854329
  N/A
  N/A
  Control
  No previous psychiatric history
 
  219908808
  219939086
  30279
  GRCh38
  Duplication
  No
  engchuan_15_ASD_discovery_controls-controlB345605_1007844543
  N/A
  N/A
  Control
  No previous psychiatric history
 
  215692592
  215966233
  273642
  GRCh38
  Deletion
  No
  engchuan_15_ASD_discovery_controls-controlB868287_1007844940
  N/A
  N/A
  Control
  No previous psychiatric history
 
  223165853
  223265429
  99577
  GRCh38
  Deletion
  No
  engchuan_15_ASD_discovery_controls-controlHABC_900521_900521
  N/A
  N/A
  Control
  No previous psychiatric history
 
  219089997
  219404280
  314284
  GRCh38
  Deletion
  No
  engchuan_15_ASD_discovery_controls-controlHABC_900938_900938
  N/A
  N/A
  Control
  No previous psychiatric history
 
  217574623
  217687604
  112982
  GRCh38
  Deletion
  No
  engchuan_15_ASD_discovery_controls-controlHABC_901174_901174
  N/A
  N/A
  Control
  No previous psychiatric history
 
  217506693
  217555012
  48320
  GRCh38
  Deletion
  No
  engchuan_15_ASD_discovery_controls-controlHABC_902493_902493
  N/A
  N/A
  Control
  No previous psychiatric history
 
  218532171
  218842676
  310506
  GRCh38
  Duplication
  No
  engchuan_15_ASD_discovery_controls-controlHABC_902517_902517
  N/A
  N/A
  Control
  No previous psychiatric history
 
  216980584
  217033747
  53164
  GRCh38
  Duplication
  No
  engchuan_15_ASD_discovery_controls-controlHABC_902807_902807
  N/A
  N/A
  Control
  No previous psychiatric history
 
  220026510
  220108966
  82457
  GRCh38
  Duplication
  No
  kanduri_15_ASD_discovery_controls-control_split1839
  N/A
  N/A
  Control
  Control screened for DSM-IV mental disorders using the Composite International Diagnostic Interview and psychotic disorders using the research version of the Structured Clinical Interview for DSM-IV
 
  223638165
  223645256
  7092
  Unknown
  Duplication
  No
  kanduri_15_ASD_discovery_controls-control_split763
  N/A
  N/A
  Control
  Control screened for DSM-IV mental disorders using the Composite International Diagnostic Interview and psychotic disorders using the research version of the Structured Clinical Interview for DSM-IV
 
  223901545
  223906113
  4569
  Unknown
  Deletion
  No
  krumm_13_ASD_discovery_controls-control13890.s1
  N/A
  F
  Control
  Unaffected sibling from SSC quad family 13890. SRS score of 47.
 
  219915448
  219927105
  11658
  GRCh38
  Duplication
  No (not tested)
  nord_11_ASD_discovery_controls-04C28078
 
 
  Control
 
 
  221461971
  221515025
  53055
  Unknown
  Duplication
 
  poultney_13_ASD_discovery_controls-control04C27316A
  N/A
  F
  Control
  NIMH Control (NIMH ID 89746)
 
  220058842
  220072959
  14118
  GRCh38
  Deletion
  No
  poultney_13_ASD_discovery_controls-control04C29555A
  N/A
  M
  Control
  NIMH Control (NIMH ID 12169)
 
  219915447
  219927107
  11661
  GRCh38
  Duplication
  No
  poultney_13_ASD_discovery_controls-control05C41778
  N/A
  M
  Control
  NIMH Control (NIMH ID 47544)
 
  215758593
  216078364
  319772
  GRCh38
  Duplication
  No
  sanders_11_ASD_discovery_controls-11033.s1
  6.8
  F
  Control (matched sibling)
  NA
  NA
  223455088
  223468098
  13011
  GRCh38
  Duplication
  No
  sanders_11_ASD_discovery_controls-11132.s1
  10.7
  M
  Control (matched sibling)
  NA
  NA
  218006005
  218015509
  9505
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-11156.s1
  10.3
  M
  Control (matched sibling)
  NA
  NA
  223455088
  223471914
  16827
  GRCh38
  Duplication
  No
  sanders_11_ASD_discovery_controls-11241.s1
  11.9
  M
  Control (matched sibling)
  NA
  NA
  215687122
  215688415
  1294
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-11470.s1
  12.2
  M
  Control (matched sibling)
  NA
  NA
  220753502
  220782670
  29169
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-11894.s1
  4.2
  M
  Control (matched sibling)
  NA
  NA
  218702842
  218722189
  19348
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-12605.s1
  13.3
  M
  Control (matched sibling)
  NA
  NA
  215687122
  215688415
  1294
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-12701.s1
  10.4
  M
  Control (matched sibling)
  NA
  NA
  216990212
  216991802
  1591
  GRCh38
  Duplication
  No
  sanders_11_ASD_discovery_controls-12749.s1
  4.3
  F
  Control (matched sibling)
  NA
  NA
  215955740
  215959536
  3797
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-12796.s1
  6.8
  F
  Control (matched sibling)
  NA
  NA
  223455088
  223471914
  16827
  GRCh38
  Duplication
  No
  sanders_11_ASD_discovery_controls-13301.s1
  12.3
  M
  Control (matched sibling)
  NA
  NA
  216874996
  216876573
  1578
  GRCh38
  Deletion
  No

Cases

Patient ID
Validation Description
Primary Disorder Inheritence
Inheritence
Family Profile
Disease Segregation
Gene Content
Altered Gene Expression
 celestino-soper_11_ASD_discovery_cases-11030
 
 
 Unknown
 Simplex
 NA
 MIA3
 
 celestino-soper_11_ASD_discovery_cases-11303
 
 
 Unknown
 Simplex
 NA
 AIDA
 
 celestino-soper_11_ASD_discovery_cases-11399
 
 
 Unknown
 Simplex
 NA
 KCNK2
 
 celestino-soper_11_ASD_discovery_cases-11455
 
 
 Unknown
 Simplex
 NA
 MIA3
 
 cusco_09_ASD_discovery_cases-AUT186
 MLPA & array SNP (Illumina 370)
 
 Paternal
 NA
 NA
 TLR5, SUSD4
 
 egger_14_ASD_discovery_cases-caseA86
 
 
 Unknown
 
 Unknown
 SLC30A10
 
 engchuan_15_ASD_discovery_cases-case13275_2543
 
 
 Unknown
 
 
 C1orf140
 
 engchuan_15_ASD_discovery_cases-case14082_1440
 
 
 Unknown
 
 
 SLC30A10
 
 engchuan_15_ASD_discovery_cases-case4365_1
 
 
 Unknown
 
 
 
 
 engchuan_15_ASD_discovery_cases-case4440_1
 
 
 Unknown
 
 
 USH2A
 
 engchuan_15_ASD_discovery_cases-case6367_5
 
 
 Unknown
 
 
 
 
 engchuan_15_ASD_discovery_cases-case8474_202
 
 
 Unknown
 
 
 SPATA17-AS1,GPATCH2,SPATA17
 
 engchuan_15_ASD_discovery_cases-case8556_201
 
 
 Unknown
 
 
 SLC30A10
 
 fitzgerald_14_ASD/DD/ID_discovery_cases-case000017
 
 
 De novo
 Unknown
 Unknown
 GPATCH2
 
 kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00000752
 FISH, qPCR, MLPA, aCGH, or standard G-banded chromosome analysis
 
 Unknown
 Unknown
 Unknown
 VDAC1P10,MRPS18BP1,SPATA17-AS1,UBBP2,RNU1-141P,TGFB2-AS1,TGFB2-OT1,NXNP1,LINC01710,RIMKLBP2,RNA5SP76,MIR215,MIR194-1,RPS15AP12,MIR664A,SNORA36B,MORF4L1P1,AURKAP1,XRCC6P3,PRELID3BP1,RN7SL464P,RNU6ATAC35P,LINC01352,HLX,RNU6-403P,LINC00210,LINC01653,RRP15,C1orf143,LYPLAL1,ZC3H11B,EPRS,IARS2,HDAC1P2,C1orf115,MARC2,MARC1,C1orf140,DUSP10,LINC01655,LINC02474,KCNK2,KCTD3,GPATCH2,SPATA17,TGFB2,SLC30A10,BPNT1,MARK1,HLX-AS1,LINC02257,USH2A,ESRRG,LYPLAL1-DT,RAB3GAP2
 
 kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00000857
 FISH, qPCR, MLPA, aCGH, or standard G-banded chromosome analysis
 
 Maternal
 Unknown
 Unknown
 TGFB2-AS1,TGFB2-OT1,NXNP1,LINC01710,RRP15,C1orf143,TGFB2
 
 kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00001718
 FISH, qPCR, MLPA, aCGH, or standard G-banded chromosome analysis
 
 De novo
 Unknown
 Unknown
 SPATA17-AS1,UBBP2,RNU1-141P,TGFB2-AS1,TGFB2-OT1,LINC00210,LINC01653,RRP15,C1orf143,GPATCH2,SPATA17,TGFB2
 
 kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00002314
 FISH, qPCR, MLPA, aCGH, or standard G-banded chromosome analysis
 
 Maternal
 Unknown
 Unknown
 GPATCH2,USH2A,ESRRG
 
 kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00002475
 FISH, qPCR, MLPA, aCGH, or standard G-banded chromosome analysis
 
 Unknown
 Unknown
 Unknown
 MRPS18BP1,SPATA17-AS1,UBBP2,RNU1-141P,TGFB2-AS1,TGFB2-OT1,NXNP1,LINC01710,RIMKLBP2,RNA5SP76,MIR215,MIR194-1,RPS15AP12,MIR664A,SNORA36B,MORF4L1P1,AURKAP1,XRCC6P3,PRELID3BP1,RN7SL464P,RNU6ATAC35P,LINC01352,HLX,RNU6-403P,LINC00210,LINC01653,RRP15,C1orf143,LYPLAL1,ZC3H11B,EPRS,IARS2,HDAC1P2,C1orf115,MARC2,MARC1,C1orf140,DUSP10,LINC01655,LINC02474,KCTD3,GPATCH2,SPATA17,TGFB2,SLC30A10,BPNT1,MARK1,HLX-AS1,LINC02257,USH2A,ESRRG,LYPLAL1-DT,RAB3GAP2
 
 kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00005210
 FISH, qPCR, MLPA, aCGH, or standard G-banded chromosome analysis
 
 Unknown
 Unknown
 Unknown
 SPATA17-AS1,UBBP2,RNU1-141P,TGFB2-AS1,TGFB2-OT1,NXNP1,LINC01710,RIMKLBP2,RNA5SP76,LINC00210,LINC01653,RRP15,C1orf143,LYPLAL1,ZC3H11B,GPATCH2,SPATA17,TGFB2,SLC30A10,ESRRG,LYPLAL1-DT
 
 krumm_13_ASD_discovery_cases-case13890.p1
 
 
 Paternal
 Simplex
 Not segregated
 SLC30A10
 
 krumm_15_ASD_discovery_cases-case11470.p1
 Illumina 1MDuo
 
 Maternal
 Simplex
 Segregated
 MARC2
 
 krumm_15_ASD_discovery_cases-case13027.p1
 1M-Duov3
 
 Paternal
 Simplex
 Segregated
 C1orf140
 
 kushima_22_SCZ_discovery_cases-caseSCZ3587
 qRT-PCR
 
 Unknown
 
 
 ESRRG,EPRS1,RRP15,SLC30A10,GPATCH2,MTARC2,IARS2,C1orf115,MTARC1,SPATA17,LYPLAL1,XRCC6P3,HLX,MORF4L1P1,MIR215,MIR194-1,LINC02869,ZC3H11B,LYPLAL1-DT,SNORA36B,TGFB2-AS1,NXNP1,PRELID3BP1,RPS15AP12,MARK1,SNX2P1,MIR664A,HDAC1P2,RIMKLBP2,RNA5SP76,LINC00210,HLX-AS1,LINC01352,LINC01653,LYPLAL1-AS1,SPATA17-AS1,TGFB2-OT1,LINC01710,LINC02779,AURKAP1,TGFB2,RN7SL464P,RNU6ATAC35P,RNU1-141P,BPNT1,UBBP2,RAB3GAP2
 
 pfundt_16_nonNDD_discovery_cases-case39
 MLPA or MAQ
 
 
 
 
 USH2A
 
 poultney_13_ASD_discovery_cases-case00HI1739A
 
 
 Unknown
 Unknown (likely multiplex/AGRE)
 Unknown
 SLC30A10
 
 poultney_13_ASD_discovery_cases-case05HI3730A
 
 
 Unknown
 Unknown (likely multiplex/AGRE)
 Unknown
 EPRS
 
 poultney_13_ASD_discovery_cases-case99HI1075A
 
 
 Unknown
 Unknown (likely multiplex/AGRE)
 Unknown
 SLC30A10
 
 prasad_12_ASD_discovery_cases-case85170L
 
 
 Unknown
 Unknown
 Unknown
 0 genes
 
 quintela_17_DD/ID_discovery_cases-caseID_295
 
 
 Maternal
 
 Unknown
 TGFB2-AS1,TGFB2-OT1,NXNP1,LINC01710,RIMKLBP2,RNA5SP76,MIR215,MIR194-1,RPS15AP12,MIR664A,SNORA36B,MORF4L1P1,AURKAP1,XRCC6P3,PRELID3BP1,RN7SL464P,RRP15,C1orf143,LYPLAL1,ZC3H11B,EPRS,IARS2,HDAC1P2,C1orf115,MARC2,TGFB2,SLC30A10,BPNT1,MARK1,LYPLAL1-DT,RAB3GAP2
 
 quintela_17_DD/ID_discovery_cases-caseID_619
 
 
 Unknown
 
 Unknown
 UBBP2,LINC00210,SPATA17
 
 sanders_11_ASD_discovery_cases-11033.p1
 
 
 Paternal
 Simplex (quad-proband matched)
 Not segregated
 
 
 sanders_11_ASD_discovery_cases-11054.p1
 
 
 Maternal
 Simplex (quad-proband matched)
 Segregated
 VDAC1P10
 
 sanders_11_ASD_discovery_cases-11132.p1
 
 
 Paternal
 Simplex (quad-proband matched)
 Not segregated
 
 
 sanders_11_ASD_discovery_cases-11289.p1
 
 
 Maternal
 Simplex (quad-proband matched)
 Not segregated
 LINC01710
 
 sanders_11_ASD_discovery_cases-11289.p1
 
 
 Maternal
 Simplex (quad-proband matched)
 Not segregated
 SPATA17-AS1,SPATA17
 
 sanders_11_ASD_discovery_cases-11470.p1
 
 
 Maternal
 Simplex (quad-proband matched)
 Not segregated
 MARC2
 
 sanders_11_ASD_discovery_cases-11538.p1
 
 
 Unknown
 Simplex (quad-proband matched)
 Segregated
 PTPN14
 
 sanders_11_ASD_discovery_cases-12160.p1
 
 
 Maternal
 Simplex (quad-proband unmatched)
 Unknown
 SLC30A10
 
 sanders_11_ASD_discovery_cases-12229.p1
 
 
 Unknown
 Simplex (quad-proband matched)
 Not segregated
 PTPN14
 
 sanders_11_ASD_discovery_cases-12286.p1
 
 
 Maternal
 Simplex (trio)
 NA
 SLC30A10
 
 sanders_11_ASD_discovery_cases-12304.p1
 
 
 Paternal
 Simplex (quad-proband matched)
 Not segregated
 
 
 sanders_11_ASD_discovery_cases-12395.p1
 
 
 Paternal
 Simplex (trio)
 NA
 PTPN14
 
 sanders_11_ASD_discovery_cases-12396.p1
 
 
 Paternal
 Simplex (quad-proband matched)
 Not segregated
 USH2A
 
 sanders_11_ASD_discovery_cases-12558.p1
 
 
 Maternal
 Simplex (trio)
 NA
 
 
 sanders_11_ASD_discovery_cases-12605.p1
 
 
 Paternal
 Simplex (quad-proband matched)
 Not segregated
 USH2A
 
 sanders_11_ASD_discovery_cases-12796.p1
 
 
 Paternal
 Simplex (quad-proband matched)
 Not segregated
 
 
 sanders_11_ASD_discovery_cases-13304.p1
 
 
 Unknown
 Simplex (quad-proband unmatched)
 Unknown
 PTPN14
 
 sanders_11_ASD_discovery_cases-13337.p1
 
 
 Paternal
 Simplex (trio)
 NA
 MARC2
 
 zhou_19_ASD_discovery_cases-caseAU052603
 qPCR
 
 De novo
 
 
 USH2A
 
 ziats_16_DD/ID/ADHD/ASD_discovery_cases-case6
 
 
 Unknown
 
 
 NDUFB1P2,TAF1A-AS1,MIA3,BROX,FAM177B,TLR5,TAF1A,AIDA,DISP1,SUSD4
 

Controls

Patient ID
Validation Description
Primary Disorder Inheritence
Inheritence
Family Profile
Disease Segregation
Gene Content
Altered Gene Expression
engchuan_15_ASD_discovery_controls-controlB308771_1007854329
 
 
  Unknown
 
 
  SLC30A10
 
engchuan_15_ASD_discovery_controls-controlB345605_1007844543
 
 
  Unknown
 
 
  USH2A
 
engchuan_15_ASD_discovery_controls-controlB868287_1007844940
 
 
  Unknown
 
 
  SUSD4
 
engchuan_15_ASD_discovery_controls-controlHABC_900521_900521
 
 
  Unknown
 
 
  RIMKLBP2,LYPLAL1,LYPLAL1-DT
 
engchuan_15_ASD_discovery_controls-controlHABC_900938_900938
 
 
  Unknown
 
 
  GPATCH2,SPATA17
 
engchuan_15_ASD_discovery_controls-controlHABC_901174_901174
 
 
  Unknown
 
 
  GPATCH2
 
engchuan_15_ASD_discovery_controls-controlHABC_902493_902493
 
 
  Unknown
 
 
 
 
engchuan_15_ASD_discovery_controls-controlHABC_902517_902517
 
 
  Unknown
 
 
  ESRRG
 
engchuan_15_ASD_discovery_controls-controlHABC_902807_902807
 
 
  Unknown
 
 
  EPRS,IARS2,BPNT1
 
kanduri_15_ASD_discovery_controls-control_split1839
 
 
  Unknown
 
 
  Intergenic CNV: nearest genes, C1orf65(dist=69353),CAPN8(dist=69716)
 
kanduri_15_ASD_discovery_controls-control_split763
 
 
  Unknown
 
 
  CAPN2
 
krumm_13_ASD_discovery_controls-control13890.s1
 
 
  Paternal
  Simplex
 
  SLC30A10
 
nord_11_ASD_discovery_controls-04C28078
 
 
 
 
 
  SUSD4
 
poultney_13_ASD_discovery_controls-control04C27316A
 
 
  Unknown
 
 
  BPNT1
 
poultney_13_ASD_discovery_controls-control04C29555A
 
 
  Unknown
 
 
  SLC30A10
 
poultney_13_ASD_discovery_controls-control05C41778
 
 
  Unknown
 
 
  USH2A
 
sanders_11_ASD_discovery_controls-11033.s1
 
 
  Paternal
  Simplex (quad)
  NA
 
 
sanders_11_ASD_discovery_controls-11132.s1
 
 
  Paternal
  Simplex (quad)
  NA
 
 
sanders_11_ASD_discovery_controls-11156.s1
 
 
  Maternal
  Simplex (quad)
  NA
 
 
sanders_11_ASD_discovery_controls-11241.s1
 
 
  Maternal
  Simplex (quad)
  NA
  USH2A
 
sanders_11_ASD_discovery_controls-11470.s1
 
 
  Maternal
  Simplex (quad)
  NA
  MARC2
 
sanders_11_ASD_discovery_controls-11894.s1
 
 
  Unknown
  Simplex (quad)
  NA
 
 
sanders_11_ASD_discovery_controls-12605.s1
 
 
  Paternal
  Simplex (quad)
  NA
  USH2A
 
sanders_11_ASD_discovery_controls-12701.s1
 
 
  Paternal
  Simplex (quad)
  NA
  ESRRG
 
sanders_11_ASD_discovery_controls-12749.s1
 
 
  Unknown
  Simplex (quad)
  NA
  USH2A
 
sanders_11_ASD_discovery_controls-12796.s1
 
 
  Paternal
  Simplex (quad)
  NA
 
 
sanders_11_ASD_discovery_controls-13301.s1
 
 
  Maternal
  Simplex (quad)
  NA
  ESRRG
 

No Animal Model Data Available
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