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Relevance to Autism

Bosman et al., 2024 reported de novo missense variants in the TRPM7 gene in three unrelated individuals presenting with hypomagnesemia, autism spectrum disorder, and developmental delay; all three missense variants were shown experimentally to result in loss-of-function of TRPM7-mediated magnesium uptake in transfected HEK293 cells with no effects on expression or plasma membrane insertion. Rare genetic variation in TRPM7 had previously been associated with hypomagnesemia with or without seizures (Lei et al., 2022; Vargas-Poussou et al., 2023). Rare de novo missense variants in TRPM7 have also been identified in three ASD probands from the Simons Simplex Collection, the Autism Sequencing Consortium, and the SPARK cohort (Iossifov et al., 2014; Satterstrom et al., 2020; Zhou et al., 2022), while de novo loss-of-function variants in this gene have been reported in two ASD probands (Zhou et al., 2022; Fu et al., 2022).

Molecular Function

This gene belongs to the melastatin subfamily of transient receptor potential family of ion channels. The protein encoded by this gene is both an ion channel and a serine/threonine protein kinase. The kinase activity is essential for the ion channel function, which serves to increase intracellular calcium levels and to help regulate magnesium ion homeostasis. The encoded protein is involved in cytoskeletal organization, cell adhesion, cell migration and organogenesis. A heterozygous missense variant in this gene that was shown experimentally to increase susceptibility to inhibition by intracellular magnesium concentrations compared to wildtype channels (p.Thr1482Ile) is a cause of amyotrophic lateral sclerosis-parkinsonism/dementia complex of Guam (Hermosura et al., 2005). The gene may also be associated with defects of cardiac function.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Pathogenic heterozygous TRPM7 variants and hypomagnesemia with developmental delay
ASD, DD, hypomagnesemia
ADHD, epilepsy/seizures
Support
Case Report: Recurrent Hemiplegic Migraine Attacks Accompanied by Intractable Hypomagnesemia Due to a de novo TRPM7 Gene Variant
Hypomagnesemia
Hemiplegic migraines
Support
Possible role for rare TRPM7 variants in patients with hypomagnesaemia with secondary hypocalcaemia
Hypomagnesemia
DD, epilepsy/seizures
Support
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD
Support
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
A TRPM7 variant shows altered sensitivity to magnesium that may contribute to the pathogenesis of two Guamanian neurodegenerative disorders
Amyotrophic lateral sclerosis-parkinsonism/dementi
Support
Rare coding variation provides insight into the genetic architecture and phenotypic context of autism
ASD
Support
Integrating de novo and inherited variants in 42
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1457R001 
 missense_variant 
 c.2999T>C 
 p.Met1000Thr 
 De novo 
  
  
 GEN1457R002 
 missense_variant 
 c.3136G>C 
 p.Gly1046Arg 
 De novo 
  
  
 GEN1457R003 
 missense_variant 
 c.3242T>G 
 p.Leu1081Arg 
 De novo 
  
  
 GEN1457R004 
 missense_variant 
 c.1135A>G 
 p.Thr379Ala 
 De novo 
  
 Simplex 
 GEN1457R005 
 missense_variant 
 c.2435T>A 
 p.Met812Lys 
 De novo 
  
  
 GEN1457R006 
 missense_variant 
 c.3575G>A 
 p.Gly1192Glu 
 De novo 
  
  
 GEN1457R007 
 splice_site_variant 
 c.4732+5A>C 
  
 De novo 
  
  
 GEN1457R008 
 splice_region_variant 
 c.1495-6T>C 
  
 De novo 
  
  
 GEN1457R009 
 frameshift_variant 
 c.2852_2853dup 
 p.Ala952MetfsTer13 
 De novo 
  
  
 GEN1457R010 
 splice_site_variant 
 c.3+1G>C 
  
 Familial 
 Maternal 
 Extended multiplex 
 GEN1457R011 
 missense_variant 
 c.3137G>A 
 p.Gly1046Asp 
 De novo 
  
 Simplex 
 GEN1457R012 
 missense_variant 
 c.2998A>G 
 p.Met1000Val 
 De novo 
  
 Simplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
15
Duplication
 89
  construct
15
Deletion
 2
 
15
Deletion-Duplication
 10
 

No Animal Model Data Available

 

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