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Relevance to Autism

Transmission And De Novo Association (TADA) analysis of whole-genome sequencing data from a cohort of 4,551 individuals in 1,004 multiplex families having two or more autistic children identified TGM1 as a novel ASD risk gene with a false discovery rate (FDR) less than 0.1. Additional de novo loss-of-function and missense variants in this gene have been observed in ASD probands (De Rubeis et al., 2014; Zhou et al., 2022).

Molecular Function

The protein encoded by this gene is a membrane protein that catalyzes the addition of an alkyl group from an akylamine to a glutamine residue of a protein, forming an alkylglutamine in the protein. This protein alkylation leads to crosslinking of proteins and catenation of polyamines to proteins. This gene contains either one or two copies of a 22 nt repeat unit in its 3' UTR. Mutations in this gene have been associated with autosomal recessive lamellar ichthyosis (LI) and nonbullous congenital ichthyosiform erythroderma (NCIE).

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Support
Integrating de novo and inherited variants in 42
ASD
Support
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1415R001 
 splice_site_variant 
 c.877-2A>G 
  
 Familial 
 Paternal 
 Multiplex 
 GEN1415R002 
 splice_site_variant 
 c.877-2A>G 
  
 Familial 
 Maternal 
 Multiplex 
 GEN1415R003 
 stop_gained 
 c.316C>T 
 p.Arg106Ter 
 Familial 
 Paternal 
 Multiplex 
 GEN1415R004 
 missense_variant 
 c.1609C>T 
 p.Arg537Trp 
 De novo 
  
  
 GEN1415R005 
 frameshift_variant 
 c.376dup 
 p.Arg126ProfsTer10 
 De novo 
  
  
 GEN1415R006 
 missense_variant 
 c.365C>T 
 p.Ser122Leu 
 Familial 
 Paternal 
  
 GEN1415R007 
 missense_variant 
 c.361C>T 
 p.Arg121Cys 
 Familial 
 Maternal 
  
 GEN1415R008 
 missense_variant 
 c.100C>T 
 p.Arg34Cys 
 Familial 
 Maternal 
  
 GEN1415R009 
 missense_variant 
 c.383A>G 
 p.Glu128Gly 
 Familial 
 Paternal 
  
 GEN1415R010 
 missense_variant 
 c.1100G>A 
 p.Arg367His 
 Familial 
 Maternal 
  
 GEN1415R011 
 missense_variant 
 c.832G>A 
 p.Gly278Arg 
 Familial 
 Maternal 
  
 GEN1415R012 
 missense_variant 
 c.143G>A 
 p.Cys48Tyr 
 Familial 
 Maternal 
  
 GEN1415R013 
 missense_variant 
 c.143G>A 
 p.Cys48Tyr 
 Familial 
 Paternal 
  
 GEN1415R014 
 missense_variant 
 c.22G>A 
 p.Asp8Asn 
 Familial 
 Maternal 
  
 GEN1415R015 
 stop_gained 
 c.316C>T 
 p.Arg106Ter 
 Unknown 
  
  
 GEN1415R016 
 missense_variant 
 c.1075G>A 
 p.Val359Met 
 Unknown 
  
  
 GEN1415R017 
 missense_variant 
 c.361C>T 
 p.Arg121Cys 
 Unknown 
  
  
 GEN1415R018 
 missense_variant 
 c.1846C>T 
 p.Leu616Phe 
 Unknown 
  
  
 GEN1415R019 
 missense_variant 
 c.100C>T 
 p.Arg34Cys 
 Unknown 
  
  
 GEN1415R020 
 missense_variant 
 c.1210G>T 
 p.Ala404Ser 
 Unknown 
  
  
 GEN1415R021 
 missense_variant 
 c.2059C>T 
 p.Arg687Cys 
 De novo 
  
  
 GEN1415R022 
 missense_variant 
 c.1103C>T 
 p.Thr368Met 
 De novo 
  
  
 GEN1415R023 
 missense_variant 
 c.968G>A 
 p.Arg323Gln 
 De novo 
  
  
 GEN1415R024 
 splice_site_variant 
 c.-2-1G>T 
  
 De novo 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
14
Duplication
 1
 
14
Duplication
 4
 
14
Duplication
 1
 
14
Deletion
 2
 
14
Deletion
 1
 

No Animal Model Data Available

No PIN Data Available
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