14q11.2-q21.2CNV Type: Deletion
Largest CNV size: 18434346 bp
Statistics Box:
Number of Reports: 2
Number of Reports: 2
Summary Information
Rare singleton deletion within this region was found in a case from a study of 15,749 individuals from the International Standards for Cytogenomic Arrays (ISCA) consortium with unexplained developmental delay, intellectual disability, dysmorphic features, multiple congenital anomalies, autism spectrum disorders, or clinical features suggestive of a chromosomal syndrome (Kaminsky et al., 2011).
Additional Locus Information
References
Major Reports
Title
Author, Year
Report Class
CNV Type
An evidence-based approach to establish the functional and clinical significance of copy number variants in intellectual and developmental disabili...
Deletion
Minor Reports
Cases
Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
han_22_ASD/DD/ID_discovery_cases
Probands with ASD or unexplained developmental delay/intellectual disability with or without other congenital anomalies from Shandong province in Northern China who were referred for genetic services from January 2014 to December 2018.
410
151 cases diagnosed with ASD (DSM-5 criteria, ADOS-2, confirmed by CARS score > 30) and 259 patients diagnosed with developmental delay/intellectual disability (DSM-5 criteria, confirmed by Gesell developmental scale DQ score < 75 and Wechsler Intelligence Scale for Children-Revised with IQ<70).
Mean age, 2 yrs. 11 mos.
68.78% Male
23594336
0
1
1
kaminsky_11_DD/ID/ASD_discovery_cases
Cases from the International Standards for Cytogenomic Arrays (ISCA) consortium
15749
Unexplained developmental delay, intellectual disability, dysmorphic features, multiple congenital anomalies, autism spectrum disorders, or clinical features suggestive of a chromosomal syndrome
NA
NA
18434346
1
0
1
Controls
Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
kaminsky_11_DD/ID/ASD_discovery_controls
Controls from the International Standards for Cytogenomic Arrays (ISCA) consortium
10118
Controls
NA
NA
NA
NA
NA
NA
Cases
Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
han_22_ASD/DD/ID_discovery_cases
Han Chinese
Array SNP
Affymetrix SNP 6.0, Affymetrix CytoScan HD
kaminsky_11_DD/ID/ASD_discovery_cases
NA
aCGH
Agilent 44K, Agilent 105K
Feature Extraction, DNA Analytics
FISH, qPCR, MLPA, aCGH, standard G-banded chromosome analysis
Controls
Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
kaminsky_11_DD/ID/ASD_discovery_controls
NA
aCGH
Agilent 44K, Agilent 105K
Feature Extraction, DNA Analytics
Cases
Patient ID
Author, Year
Age
Gender
Primary Diagnosis
Clinical Profile
Cognitive Profile
CNV Start
CNV End
CNV Size
Genome Build
Type Method
Validation
han_22_ASD/DD/ID_discovery_cases-case16D1511
1 yr.
F
Developmental delay
Facial dysmorphism
22481501
46075836
23594336
GRCh38
Duplication
No
kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00003844
NA
NA
Developmental delay/intellectual disability/ASD
Clinical profile NA
Cognitive profile NA
23548960
41983402
18434443
GRCh38
Deletion
Yes
Controls
No Control Data Available
Cases
Patient ID
Validation Description
Primary Disorder Inheritence
Inheritence
Family Profile
Disease Segregation
Gene Content
Altered Gene Expression
han_22_ASD/DD/ID_discovery_cases-case16D1511
Unknown
CEBPE,BCL2L2,CMA1,ARHGAP5,CFL2,COCH,LTB4R,FKBP3,DAD1,FOXG1,CTSG,TRAJ10,TRAJ34,RNU1-28P,TRAJ47,TRAJ22,TRAJ8,TRAC,TRAJ11,TRAJ3,TRAJ44,TRAJ49,TRAJ17,TRAJ41,TRAJ52,TRAJ13,TRAJ18,TRAJ24,TRAJ2,TRAJ9,TRAJ32,TRAJ6,TRAJ5,TRAJ21,TRAJ23,TRAJ14,TRAJ36,TRAJ12,TRAJ33,TRAJ39,TRAJ19,TRAJ27,TRAJ29,TRAJ50,TRAJ40,TRAJ7,TRAJ16,TRAJ43,TRAJ4,TRAJ46,TRAJ28,TRAJ31,RNU1-27P,TRAJ55,TRAJ42,TRAJ35,TRAJ25,TRAJ53,TRAJ26,TRAJ54,TRAJ51,TINF2,TRAJ30,TRAJ38,CIDEB,TRAJ48,TRAJ45,TRAJ1,TRAJ20,TRAJ37,GMPR2,CHMP4A,STRN3,MBIP,EMC9,STXBP6,SLC22A17,RBM23,G2E3,MIS18BP1,C14orf119,KLHL28,HAUS4,PRPF39,RNF31,DHRS4-AS1,PPP2R3C,FANCM,SNX6,LTB4R2,HOMEZ,EAPP,SDR39U1,NYNRIN,OR6E1P,CDH24,NPAS3,ABHD4,THTPA,C14orf93,OR6J1,IPO4,IL25,OR7K1P,NUBPL,FSCB,BRMS1L,DCAF11,CARMIL3,PPP1R3E,ARHGAP5-AS1,JPH4,DTD2,INSM2,EGLN3,ZFHX2,AJUBA,SLC25A21,CMTM5,PSMB11,C14orf28,KRT18P6,DHRS1,MRPL52,TRAPPC6B,PPIAP4,MIPOL1,LRFN5,MDP1,ADCY4,FITM1,NOP9,REM2,CLEC14A,SPTSSA,FOXA1,GPR33,GZMH,GZMB,IGBP1P1,BTF3P2,FAM177A1,RALGAPA1,LINC00639,SFTA3,FBXO33,TSSK4,HNRNPUP1,KRT8P1,TUBBP3,YWHAZP1,RPL12P5,SYF2P1,EIF4BP1,ARHGAP16P,BNIP3P1,DHRS4L2,YWHAQP1,NUTF2P2,MTCO1P2,RPL26P3,SEPTIN7P1,DNAJC8P1,UBE2CP1,COILP1,TTC6,ATP5MC1P2,LINC01551,MRPL57P8,KRT8P2,YTHDF2P1,LINC00517,DPPA3P2,MIR208A,RPL12P6,RPL23AP8,RPL9P3,DPRXP3,RPL21P5,ILF2P2,CBLN3,KIAA1143P1,RPL23AP71,LINC02315,DNAJC19P9,HMGN2P6,DHRS4L1,RPL7AP3,MIR624,RPS19P3,RPL7AP2,H3P37,MIR208B,RPL29P3,SNORD127,SLC25A21-AS1,LMLN2,NFKBIA,MIA2,MYH6,OXA1L,NRL,NOVA1,MMP14,MYH7,NFATC4,NEDD8,DOCK11P1,RPS3AP4,RNU7-41P,MIA2-AS1,CYB5AP5,RPL23AP70,BRD7P1,LINC00645,MIR4307,SRP54-AS1,NKX2-1-AS1,EIF4A1P12,MIR3171,RRAGAP1,PRMT5-AS1,QRSL1P3,RNF212B,NEDD8-MDP1,BCL2L2-PABPN1,MIR4503,LINC00871,RNA5SP383,MIR4707,HIGD1AP17,PTCSC3,HEATR5A-DT,MIR4307HG,LINC00609,PRMT5-DT,LINC02302,LINC02294,PNN,PSME1,RABGGTA,PAX9,PRKD1,PSME2,PCK2,PHKBP2,PSMB5,PSMA6,MIR7703,RNU6-7,RNU6-8,AP1G2-AS1,LINC02327,NOVA1-DT,LINC00596,LINC02293,FOXG1-AS1,LINC02313,SEC23A-AS1,PRPF39-DT,LRFN5-DT,EGLN3-AS1,LINC02332,LINC02326,LINC02282,G2E3-AS1,OXA1L-DT,NUBPL-DT,LINC02286,LINC02303,LINC02300,LINC02281,LINC02307,RN7SKP257,RN7SKP205,NKX2-1,SRP54,SSTR1,TGM1,RNU6-1046P,RNU6-886P,RN7SL660P,RNU6-455P,RNU6-1234P,RNU11-5P,RNU6-1277P,RNU6-1261P,RNU6-273P,RNU6-541P,RNU7-93P,RNU6-602P,RNU6-552P,RN7SKP21,RNU6-1138P,RNU6-864P,FKBP1BP1,AJUBA-DT,LINC02306,LINC02277,ZFHX2-AS1,BAZ1A-AS1,GEMIN2,AP1G2,PABPN1,GLRX5P3,RRAGAP1-AS1,AKAP6,CPNE6,SLC7A7,REC8,PRORP,DHRS2,PRMT5,EFS,BAZ1A,DHRS4,AP4S1,SEC23A,RIPK3,TM9SF1,IRF9,TOGARAM1,HECTD1,LRP10,KHNYN,NGDN,ACIN1,NKX2-8,HEATR5A,SLC7A8,SCFD1
kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00003844
FISH, qPCR, MLPA, aCGH, or standard G-banded chromosome analysis
Unknown
Unknown
Unknown
BRD7P1,RN7SKP205,LINC00596,DHRS4,DHRS4L1,CPNE6,FITM1,PSME1,EMC9,PSME2,MIR7703,RNA5SP383,REC8,TM9SF1,TSSK4,CHMP4A,GMPR2,TINF2,TGM1,RABGGTA,NOP9,CIDEB,LTB4R2,RIPK3,KHNYN,SDR39U1,CMA1,GZMB,LINC02286,HMGN2P6,OR7K1P,CYB5AP5,MIR4307,MIR3171,BNIP3P1,RPL26P3,EIF4A1P12,BTF3P2,FOXG1,LINC02282,RNU6-864P,RNU11-5P,RNU6-1234P,SYF2P1,UBE2CP1,RPL12P5,HIGD1AP17,MIR624,RPL21P5,RNU6-541P,GPR33,RNU6-602P,RNU6-455P,ARHGAP5-AS1,RNU6-7,RNU6-8,RN7SL660P,MTCO1P2,RPL23AP71,RNU1-27P,RNU1-28P,RPS19P3,RNU6-1261P,RPL23AP8,CFL2,RPL12P6,RNU7-41P,IGBP1P1,RPL23AP70,SEPT7P1,MRPL57P8,DPRXP3,RPL7AP3,RPL9P3,NFKBIA,DNAJC8P1,RPS3AP4,KRT18P6,NUTF2P2,ILF2P2,RN7SKP21,DPPA3P2,PHKBP2,RPL29P3,NKX2-8,RN7SKP257,MIR4503,SLC25A21-AS1,RNU6-273P,RNU6-886P,FOXA1,RNU6-1277P,SSTR1,CLEC14A,KRT8P1,SEC23A-AS1,PNN,YTHDF2P1,FKBP1BP1,ZFHX2-AS1,ZFHX2,THTPA,AP1G2,JPH4,DHRS2,CARMIL3,NRL,PCK2,RNF31,IRF9,IPO4,MDP1,NEDD8-MDP1,NEDD8,DHRS1,LTB4R,ADCY4,NYNRIN,CBLN3,CTSG,GZMH,LINC02294,LINC02293,MIR4307HG,LINC00645,LINC02300,FOXG1-AS1,LINC01551,LINC02281,G2E3,COCH,LINC02313,EGLN3-AS1,SPTSSA,EAPP,SRP54-AS1,FAM177A1,PPP2R3C,PSMA6,INSM2,QRSL1P3,LINC00609,RNU7-93P,SFTA3,NKX2-1,NKX2-1-AS1,PAX9,LINC00517,PPIAP4,GEMIN2,TRAPPC6B,RPL7AP2,FBXO33,LINC02315,DHRS4-AS1,DHRS4L2,NFATC4,STXBP6,LINC02306,NOVA1,LINC02588,LINC02327,LINC02326,PRKD1,G2E3-AS1,SCFD1,STRN3,AP4S1,HECTD1,HEATR5A,NUBPL,ARHGAP5,EGLN3,BAZ1A,SRP54,KIAA0391,BRMS1L,PTCSC3,MBIP,MIPOL1,SEC23A,MIA2,LRFN5,DCAF11,DTD2,AKAP6,SNX6,RALGAPA1,SLC25A21,TTC6,LINC00639,NPAS3
Controls
No Control Data Available
No Animal Model Data Available