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Relevance to Autism

Infantile hypotonia with psychomotor retardation and characteristic facies-3 (OMIM 616900) is a severe autosomal recessive neurodevelopmental disorder caused by biallelic variants in the TBCK gene. Bhoj et al., 2016 reported 13 individuals from nine unrelated families with likely pathogenic biallelic variants in the TBCK gene; autism was observed in one of these individuals.

Molecular Function

This gene encodes a protein that contains a protein kinase domain, a Rhodanase-like domain and the Tre-2/Bub2/Cdc16 (TBC) domain. The encoded protein is thought to play a role in actin organization, cell growth and cell proliferation by regulating the mammalian target of the rapamycin (mTOR) signaling pathway. This protein may also be involved in the transcriptional regulation of the components of the mTOR complex.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Mutations in TBCK, Encoding TBC1-Domain-Containing Kinase, Lead to a Recognizable Syndrome of Intellectual Disability and Hypotonia.
Infantile hypotonia with psychomotor retardation a
ASD
Support
DD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Comprehensive genetic analysis confers high diagnostic yield in 16 Japanese patients with corpus callosum anomalies
Corpus callosum anomalies
DD
Support
Epilepsy/seizures
DD, ID

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1141R001a 
 splice_site_variant 
 c.1774G>A 
 p.Glu592Lys 
 Familial 
 Both parents 
 Multiplex 
 GEN1141R002a 
 frameshift_variant 
 c.783-75_783-74insAT 
  
 Familial 
 Both parents 
 Simplex 
 GEN1141R003a 
 missense_variant 
 c.1652T>C 
 p.Leu551Pro 
 Familial 
 Both parents 
 Simplex 
 GEN1141R004a 
 splice_site_variant 
 c.1934A>G 
 p.Asp645Gly 
 Familial 
  
 Multiplex 
 GEN1141R004b 
 frameshift_variant 
 c.783-103_783-100del 
  
 Familial 
  
 Multiplex 
 GEN1141R005a 
 stop_gained 
 c.376C>T 
 p.Arg126Ter 
 Familial 
 Both parents 
 Simplex 
 GEN1141R006a 
 frameshift_variant 
 c.1246del 
 p.Ser416AlafsTer13 
 Familial 
 Both parents 
 Multiplex 
 GEN1141R007a 
 splice_site_variant 
 c.455+4C>G 
  
 Familial 
 Both parents 
 Simplex 
 GEN1141R008a 
 stop_gained 
 c.376C>T 
 p.Arg126Ter 
 Familial 
 Both parents 
 Simplex 
 GEN1141R009a 
 copy_number_loss 
 c.(658+1_659-1)_(2059+1_2060-1)del 
 p.(=) 
 Familial 
  
 Multiplex 
 GEN1141R009b 
 stop_gained 
 c.376C>T 
 p.Arg126Ter 
 Familial 
  
 Multiplex 
 GEN1141R010a 
 missense_variant 
 c.1201T>C 
 p.Tyr401His 
 Familial 
 Maternal 
  
 GEN1141R010b 
 missense_variant 
 c.1588C>T 
 p.Arg530Cys 
 Familial 
 Paternal 
  
 GEN1141R011 
 missense_variant 
 c.2195A>G 
 p.Tyr732Cys 
 De novo 
  
  
 GEN1141R012 
 missense_variant 
 c.1039C>G 
 p.Arg347Gly 
 De novo 
  
 Simplex 
 GEN1141R013 
 missense_variant 
 c.790C>G 
 p.Pro264Ala 
 De novo 
  
 Simplex 
 GEN1141R014a 
 splice_site_variant 
 c.1860+2T>A 
  
 Familial 
 Both parents 
 Unknown 
  et al.  
 GEN1141R015a 
 missense_variant 
 c.557A>G 
 p.Asp186Gly 
 Familial 
  
 Multiplex 
  et al.  
 GEN1141R015b 
 frameshift_variant 
 c.737_738del 
 p.Val246AspfsTer6 
 Familial 
  
 Multiplex 
  et al.  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
4
Duplication
 1
 
4
Duplication
 1
 
4
Deletion-Duplication
 12
 
4
Duplication
 2
 

No Animal Model Data Available

 

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