4q24CNV Type: Deletion-Duplication
Largest CNV size: 212926 bp
Statistics Box:
Number of Reports: 12
Number of Reports: 12
Summary Information
Summary statement in development
Additional Locus Information
References
Major Reports
Title
Author, Year
Report Class
CNV Type
Excess of rare, inherited truncating mutations in autism.
Deletion-Duplication
Paternally inherited cis-regulatory structural variants are associated with autism.
Deletion
Minor Reports
Title
Author, Year
Report Class
CNV Type
Multiple recurrent de novo CNVs, including duplications of the 7q11.23 Williams syndrome region, are strongly associated with autism.
Deletion-Duplication
Rare de novo and transmitted copy-number variation in autistic spectrum disorders.
Duplication
Use of array CGH to detect exonic copy number variants throughout the genome in autism families detects a novel deletion in TMLHE.
Duplication
A discovery resource of rare copy number variations in individuals with autism spectrum disorder.
Deletion
Diagnostic yield of array comparative genomic hybridization in adults with autism spectrum disorders.
Duplication
Performance of case-control rare copy number variation annotation in classification of autism.
Deletion-Duplication
Genome-wide analysis of copy number variations identifies PARK2 as a candidate gene for autism spectrum disorder.
Deletion
Copy-number variations are enriched for neurodevelopmental genes in children with developmental coordination disorder.
Deletion
Copy Number Variations independently induce Autism Spectrum Disorder.
Deletion
Chromosomal microarray analysis in a cohort of underrepresented population identifies SERINC2 as a novel candidate gene for autism spectrum disorder.
Deletion
Cases
Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
brandler_18_ASD_discovery_cases
Affected individuals from the Relating Genes with Adolescent and Child Health (REACH) cohort (362 cases from 311 families; 54 multiplex, 243 simplex) and the Simons Simplex 1 (SSC1) cohort (518 cases from simplex quad families)
880
REACH cohort: 285 cases diagnosed with ASD, 43 cases diagnosed with PDD-NOS, 10 cases diagnosed with ADHD, and 24 cases presenting with speech delay, epilepsy, anxiety, or other related developmental disorders that were classified as cases for bioinformatics analyses; Simons Simplex Collection 1 (SSC1) cohort: all 518 cases were diagnosed with ASD
N/A
N/A
58
1
0
1
celestino-soper_11_ASD_discovery_cases
ASD probands from Simons Simplex Collection (SSC) trios. 90 of the probands in this study were also used in the Sanders et al. 2011 CNV report.
99
ASD
87.88% Male
27945
0
1
1
engchuan_15_ASD_discovery_cases
Samples from the Autism Genome Project (AGP)
1892
Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
N/A
85.78% Male
169909
3
3
6
hnoonual_17_ASD_discovery_cases
Cohort of 114 Thai ASD probands (68 retrospective ASD cases with the use of chromosomal microarray/CMA as a second line test; 46 prospective ASD and developmental delay cases with the use of CMA as the first-tier test)
114
68 cases with non-syndromic ASD (61 of which also presented with intellectual disability) were diagnosed with ASD based on meeting DSM-IV criteria for ASD, whereas an additional 46 prospective ASD and DD cases were given a clinical diagnosis of ASD based on DSM-5 criteria.
Range, 1-18 years (at time of recruitment)
79.82% Male
97000
1
0
1
krumm_15_ASD_discovery_cases
Probands from the Simons Simplex Collection
2377
Diagnosis of ASD
N/A
N/A
155751
1
1
2
levy_11_ASD_discovery_cases
Autistic probands from 887 families from the Simons Simplex Collection (SSC)
858
ASD
87.06% Male
35034
0
1
1
mosca_16_DCD_discovery_cases
Participants recruited as part of a multidisciplinary study at the Alberta Children's Hospital (Calgary, Alberta, Canada)
82
All cases met diagnostic criteria for developmental coordination disorder (DCD) with or without co-occurring ADHD and/or reading disorder.
Range, 8-17 years (Mean, 10.06 2.92 yrs.)
N/A
508432
1
0
1
prasad_12_ASD_discovery_cases
Unrelated ASD cases recruited from three Canadian sites (Hospital for Sick Children, McMaster University, and Memorial University of Newfoundland); the majority of cases had been previously genotyped with results published in Marshall et al., 2008 and Pinto et al., 2010. 20 cases from initial cohort of 696 were excluded from further analysis (due to CNVs > 5 Mb).
676
Diagnosis of ASD based on meeting criteria on ADI-R and/or ADOS
NA
82.84% Male
46837
1
0
1
sanders_11_ASD_discovery_cases
Autistic probands from the Simons Simplex Collection (SSC). 872 probands in quartet families, 272 probands in trios.
1124
ASD diagnosis: 89.5% autism; 8.5% PDD-NOS, 2% Asperger syndrome. Mean full-scale IQ 85.1 1.5 (mean verbal IQ, 81.9 1.7; mean non-verbal IQ, 88.4 1.4)
Mean, 9.1 yrs.
86.1% Male
212926
30
5
35
stobbe_13_ASD_discovery_cases
Adult ASD cases referred for genetic evaluation of autism from July 2009 through April 2012
36
Diagnosis of ASD confirmed in 34 of 36 patients; diagnosis of ASD based on DSM-IV criteria and confirmed by chart review by neurologist specializing in autism.
Range, 18-45 yrs. (mean 25.3 yrs.)
77.78% Male
360000
0
1
1
yingjun_17_ASD_discovery_cases
ASD probands referred to the Clinical Genetics Service for genetic testing
64
Diagnosis of ASD based on Autism Behavior Checklist (ABC) and Childhood Autism Rating Scale (CARS)
N/A
N/A
369331
1
0
1
yin_16_ASD_discovery_cases
Discovery cohort of ASD cases recruited from the Department of Psychiatry of National Taiwan University Hospital (NTUH), Chang Gung Memorial Hospital (CGMH), Taoyuan, and Taoyuan Mental Hospital (TMH), Taiwan.
335
Cases diagnosed with autistic disorder according to DSM-IV and confirmed by using the Chinese version of ADI-R. Cases' autistic behaviors assessed by Social Responsiveness Scale (SRS), and cognitive functions assessed by the Weschler Intelligence Scale for Children-Third Edition (WISC-III) and the Wisconsin Card Sorting Test (WCST).
Mean, 9.39 4.04 yrs.
89.3% Male
82917
1
0
1
Controls
Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
engchuan_15_ASD_discovery_controls
Platform-matched controls from three large studies: SAGE (Study of Addiction Genetics and Environment), Ontario Colorectal Cancer study, and HABC (Health Aging and Body Composition)
2342
Controls; subjects had no previous psychiatric history
N/A
46.67% Male
204874
10
3
13
krumm_15_ASD_discovery_controls
Unaffected siblings from quad families from the Simons Simplex Collection
1786
Control
N/A
N/A
155751
1
0
1
levy_11_ASD_discovery_controls
Unaffected siblings of autistic probands from 887 families from the Simons Simplex Collection (SSC)
863
Control
47.97% Male
35034
0
1
1
poultney_13_ASD_discovery_controls
Controls matched for European ancestry from NIMH and CEPH retained after filtering (original cohort size of 379 controls)
260
Control
N/A
47.49% Male (before filtering)
116120
0
3
3
prasad_12_ASD_discovery_controls
PDx controls [1000 DNA samples from reportedly healthy donors (50.2% male) from BioServe (Beltsville, MD)] and 4139 in-house controls previously reported in Krawcak et al. 2006, Stewart et al. 2009, and Bierut et al. 2010. CNVs identified in controls were used to define rare ASD-specific CNVs.
5139
Control
NA
NA (PDx controls 50.2% male)
46837
0
0
0
sanders_11_ASD_discovery_controls
Matched siblings of autistic probands from the Simons Simplex Collection (SSC).
872
Controls
Mean, 10.0 yrs.
272490
22
3
25
sherman_21_ASD_discovery_controls
Unaffected siblings of ASD probands from the Simons Simplex Collection (n=2,424) and the SPARK cohort (n=3,076) screened for mosaic CNVs (mCNVs)
5500
Control (unaffected siblings of ASD probands)
Range, 3-18 yrs.
NA
1118467
0
1
1
yin_16_ASD_discovery_controls
Individuals from the Han Chinese Cell and Genome Bank (HCCGB) in Taiwan
1093
Controls
Mean, 68.07 10.12 yrs.
48.0% Male
82917
0
0
0
Cases
Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
brandler_18_ASD_discovery_cases
N/A
WGS
Illumina HiSeq X10 or HiSeq 2500
ForestSV, Lumpy, Manta, Mobster, SV2
PCR, array SNP
celestino-soper_11_ASD_discovery_cases
aCGH
Agilent 1M
ADM-2
Agilent Feature Extraction v10.7.3.1, Agilent DNA Analytics v4.0.76
None
engchuan_15_ASD_discovery_cases
Caucasian
Solid phase hybridization
Illumina 1M
None
hnoonual_17_ASD_discovery_cases
Thai
Solid phase hybridization
Illumina Infinium CytoSNP-850K v1.1 BeadChip
BlueFuse Multi v4.3, GenomeStudio Data Analysis v.2011.1
None
krumm_15_ASD_discovery_cases
N/A
WES
CoNIFER, XHMM
Solid phase hybridization (Illumina 1M, 1 M Duo, or Omni 2.5)
levy_11_ASD_discovery_cases
aCGH
NimbleGen HD2
HMM
mosca_16_DCD_discovery_cases
Canada
Solid phase hybridization
Illumina HumanOmni2.5-Quad BeadChip
iPattern, PennCNV, QuantiSNP, CNVPartition
None
prasad_12_ASD_discovery_cases
Canada
aCGH
Agilent 1M
ADM-2, DNAcopy (R Bioconductor)
DNA Analytics v4.0.85 (Agilent), DNAcopy
None
sanders_11_ASD_discovery_cases
White non-Hispanic, 74.5%; mixed, 9.3%, Asian, 4.3%, White Hispanic, 4.0%, African-American, 3.8%; other, 4.2&
Solid phase hybridization
Illumina 1M v1, Illumina 1M v3
PennCNV, QuantiSNP, GNOSIS
stobbe_13_ASD_discovery_cases
N/A
aCGH
NimbleGen CGX-3v1.0
ADM-1
NimbleScan 2.5, DNA Analytics 4.0
None
yingjun_17_ASD_discovery_cases
Chinese
Array SNP
Affymetrix CytoScan HD
Affymetrix ChAS
N/A (Validation of some CNVs by FISH, qPCR was described, but the identity of validated CNVs was not reported)
yin_16_ASD_discovery_cases
Han Chinese
Array SNP
Affymetrix 6.0
Affymetrix Genotyping Console v.4.1
None
Controls
Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
engchuan_15_ASD_discovery_controls
Caucasian
Solid phase hybridization
Illumina 1M
None
krumm_15_ASD_discovery_controls
N/A
WES
CoNIFER, XHMM
Solid phase hybridization (Illumina 1M, 1 M Duo, or Omni 2.5)
levy_11_ASD_discovery_controls
aCGH
NimbleGen HD2
HMM
poultney_13_ASD_discovery_controls
European
WES
Agilent SureSelect Human All Exon v.2
XHMM
None
prasad_12_ASD_discovery_controls
NA
aCGH
Agilent 1M
ADM-2, DNAcopy (R Bioconductor)
DNA Analytics v4.0.85 (Agilent), DNAcopy
sanders_11_ASD_discovery_controls
Solid phase hybridization
Illumina 1M v1 or Illumina 1M v3
PennCNV, QuantiSNP, GNOSIS
sherman_21_ASD_discovery_controls
NA
Solid phase hybridization
Illumina 1Mv1, Illumina 1Mv3, Illumina Omni2.5, Illumina Infinium Global Screening Array-24 v.1.0
MoChA
None
yin_16_ASD_discovery_controls
Han Chinese
Array SNP
Affymetrix 6.0
Affymetrix Genotyping Console v.4.1
None
Cases
Patient ID
Author, Year
Age
Gender
Primary Diagnosis
Clinical Profile
Cognitive Profile
CNV Start
CNV End
CNV Size
Genome Build
Type Method
Validation
brandler_18_ASD_discovery_cases-caseSSC05463
N/A
M
ASD
Case from SSC cohort
102366016
102366074
59
GRCh38
Deletion
Yes
celestino-soper_11_ASD_discovery_cases-11303
NA
M
ASD
NA
NA
105396261
105424206
27946
GRCh38
Duplication
No
engchuan_15_ASD_discovery_cases-case13072_853
N/A
N/A
ASD
Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
106367292
106473819
106528
GRCh38
Duplication
No
engchuan_15_ASD_discovery_cases-case14236_2610
N/A
N/A
ASD
Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
103279072
103323974
44903
GRCh38
Deletion
No
engchuan_15_ASD_discovery_cases-case2165_1
N/A
N/A
ASD
Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
101392717
101562626
169910
GRCh38
Duplication
No
engchuan_15_ASD_discovery_cases-case3192_3
N/A
N/A
ASD
Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
105544971
105577615
32645
GRCh38
Deletion
No
engchuan_15_ASD_discovery_cases-case3505_3
N/A
N/A
ASD
Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
103281432
103323974
42543
GRCh38
Deletion
No
engchuan_15_ASD_discovery_cases-case4460_1
N/A
N/A
ASD
Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
104302835
104361513
58679
GRCh38
Duplication
No
hnoonual_17_ASD_discovery_cases-caseTM13-3
N/A
M
ASD
Macrocephaly
102639806
102737193
97388
GRCh38
Deletion
No
krumm_15_ASD_discovery_cases-case11310.p1
N/A
Male
ASD
Proband from the Simons Simplex Collection (SSC). Family type: Quad
101917992
102073743
155752
GRCh38
Deletion
Yes
krumm_15_ASD_discovery_cases-case12619.p1
N/A
Male
ASD
Proband from the Simons Simplex Collection (SSC). Family type: Quad
102043838
102073743
29906
GRCh38
Duplication
Yes
levy_11_ASD_discovery_cases-11707.p1
NA
M
ASD
NA
NA
105621882
105656915
35034
GRCh38
Duplication
No
mosca_16_DCD_discovery_cases-case103303
N/A
M
DCD (with or without ADHD and/or RD)
Ancestry: unknown. Family history: maternal diagnosis unknown; paternal diagnosis unknown.
103430081
103938512
508432
GRCh38
Deletion
No
prasad_12_ASD_discovery_cases-case146437L
NA
F
ASD
Diagnosis of ASD based on meeting criteria on ADI-R and/or ADOS. CNV identified by previous SNP microarray study
105025726
105072562
46837
Unknown
Deletion
No
sanders_11_ASD_discovery_cases-11066.p1
8.9
M
Autism
NA
Full-scale IQ, 88; non-verbal IQ, 92; verbal IQ 86
106171012
106178580
7569
GRCh38
Deletion
No
sanders_11_ASD_discovery_cases-11073.p1
9.7
M
Autism
NA
Full-scale IQ, 100; non-verbal IQ, 100; verbal IQ, 101
103281432
103329167
47736
GRCh38
Deletion
No
sanders_11_ASD_discovery_cases-11086.p1
7.4
F
Autism
NA
Full-scale IQ, 84; non-verbal IQ, 82; verbal IQ, 93
103281432
103337239
55808
GRCh38
Deletion
No
sanders_11_ASD_discovery_cases-11090.p1
11.7
M
Autism
NA
Full-scale IQ, 56; non-verbal IQ, 67; verbal IQ, 53
104809610
104819007
9398
GRCh38
Duplication
No
sanders_11_ASD_discovery_cases-11131.p1
7.6
M
Autism
NA
Full-scale IQ, 80; non-verbal IQ, 75; verbal IQ 96
103820158
103839885
19728
GRCh38
Deletion
No
sanders_11_ASD_discovery_cases-11187.p1
7.8
M
Autism
NA
Full-scale IQ, 112; non-verbal IQ, 115; verbal IQ, 108
103820158
103839885
19728
GRCh38
Deletion
No
sanders_11_ASD_discovery_cases-11262.p1
6.2
M
Autism
NA
Full-scale IQ, 84; non-verbal IQ, 85; verbal IQ, 89
101797638
101804938
7301
GRCh38
Deletion
No
sanders_11_ASD_discovery_cases-11297.p1
12.8
M
Autism
NA
Full-scale IQ, 87; non-verbal IQ, 98; verbal IQ 73
103820158
103839885
19728
GRCh38
Deletion
No
sanders_11_ASD_discovery_cases-11298.p1
15.8
M
Autism
NA
Full-scale IQ, 141; non-verbal IQ, 132; verbal IQ, 143
106602743
106716005
113263
GRCh38
Deletion
No
sanders_11_ASD_discovery_cases-11301.p1
9.8
M
Autism
NA
Full-scale IQ, 101; non-verbal IQ, 104; verbal IQ, 96
106171012
106177974
6963
GRCh38
Deletion
No
sanders_11_ASD_discovery_cases-11310.p1
11
M
Autism
NA
Full-scale IQ, 83; non-verbal IQ, 97; verbal IQ, 63
101910128
102123054
212927
GRCh38
Deletion
No
sanders_11_ASD_discovery_cases-11381.p1
5.6
M
Autism
NA
Full-scale IQ, 79; non-verbal IQ, 89; verbal IQ, 68
104268829
104436571
167743
GRCh38
Duplication
No
sanders_11_ASD_discovery_cases-11551.p1
15.5
M
Autism
NA
Full-scale IQ, 98; non-verbal IQ, 101; verbal IQ, 95
103820158
103839885
19728
GRCh38
Deletion
No
sanders_11_ASD_discovery_cases-11659.p1
6.4
F
Autism
NA
Full-scale IQ, 88; non-verbal IQ, 89; verbal IQ, 94
106683178
106687630
4453
GRCh38
Deletion
No
sanders_11_ASD_discovery_cases-11707.p1
13.5
M
Autism
NA
Full-scale IQ, 19; non-verbal IQ, 23; verbal IQ, 16
105622687
105651299
28613
GRCh38
Duplication
No
sanders_11_ASD_discovery_cases-11718.p1
10.8
M
Autism
NA
Full-scale IQ, 97; non-verbal IQ, 93; verbal IQ, 108
106683178
106687630
4453
GRCh38
Deletion
No
sanders_11_ASD_discovery_cases-11922.p1
11.2
M
Autism
NA
Full-scale IQ, 85; non-verbal IQ, 84; verbal IQ, 90
106683178
106687630
4453
GRCh38
Deletion
No
sanders_11_ASD_discovery_cases-12003.p1
4.3
M
ASD
NA
Full-scale IQ, 115; non-verbal IQ, 120; verbal IQ, 103
106683178
106687630
4453
GRCh38
Deletion
No
sanders_11_ASD_discovery_cases-12083.p1
7.9
M
Autism
NA
Full-scale IQ, 114; non-verbal IQ, 111; verbal IQ, 117
106683178
106687630
4453
GRCh38
Deletion
No
sanders_11_ASD_discovery_cases-12158.p1
5.7
M
Autism
NA
Full-scale IQ, 86; non-verbal IQ, 81; verbal IQ, 100
102925641
102948934
23294
GRCh38
Duplication
No
sanders_11_ASD_discovery_cases-12162.p1
4.3
M
Autism
NA
Full-scale IQ, 67; non-verbal IQ, 68; verbal IQ, 75
103820158
103842755
22598
GRCh38
Deletion
No
sanders_11_ASD_discovery_cases-12210.p1
16.3
M
Autism
NA
Full-scale IQ, 18; non-verbal IQ, 19; verbal IQ, 19
106683178
106687630
4453
GRCh38
Deletion
No
sanders_11_ASD_discovery_cases-12220.p1
14.4
F
Autism
NA
Full-scale IQ, 33; non-verbal IQ, 43; verbal IQ, 13
103281432
103337239
55808
GRCh38
Deletion
No
sanders_11_ASD_discovery_cases-12297.p1
15
M
Autism
NA
Full-scale IQ, 97; non-verbal IQ, 102; verbal IQ, 89
101797638
101804938
7301
GRCh38
Deletion
No
sanders_11_ASD_discovery_cases-12312.p1
5.5
M
Autism
NA
Full-scale IQ, 73; non-verbal IQ, 80; verbal IQ, 70
106683178
106687630
4453
GRCh38
Deletion
No
sanders_11_ASD_discovery_cases-12339.p1
15.5
M
Autism
NA
Full-scale IQ, 43; non-verbal IQ, 63; verbal IQ, 33
103820158
103839885
19728
GRCh38
Deletion
No
sanders_11_ASD_discovery_cases-12395.p1
5.2
M
Autism
NA
Full-scale IQ, 85; non-verbal IQ, 91; verbal IQ, 81
103820158
103839885
19728
GRCh38
Deletion
No
sanders_11_ASD_discovery_cases-12462.p1
16.8
M
Autism
NA
Full-scale IQ, 112; non-verbal IQ, 113; verbal IQ, 108
101587400
101593976
6577
GRCh38
Deletion
No
sanders_11_ASD_discovery_cases-12505.p1
5.3
M
ASD
NA
Full-scale IQ, 75; non-verbal IQ, 87; verbal IQ, 48
106171012
106177974
6963
GRCh38
Deletion
No
sanders_11_ASD_discovery_cases-12619.p1
7
M
Autism
NA
Full-scale IQ, 86; non-verbal IQ, 87; verbal IQ, 87
102040723
102223733
183011
GRCh38
Duplication
No
sanders_11_ASD_discovery_cases-12701.p1
6.7
M
Autism
NA
Full-scale IQ, 73; non-verbal IQ, 77; verbal IQ, 74
101473929
101495151
21223
GRCh38
Deletion
No
sanders_11_ASD_discovery_cases-12836.p1
6.8
M
Autism
NA
Full-scale IQ, 127; non-verbal IQ, 121; verbal IQ, 129
101797638
101804938
7301
GRCh38
Deletion
No
sanders_11_ASD_discovery_cases-12878.p1
6.1
M
Autism
NA
Full-scale IQ, 116; non-verbal IQ, 111; verbal IQ, 120
103820158
103842792
22635
GRCh38
Deletion
No
sanders_11_ASD_discovery_cases-12937.p1
17.3
M
Autism
NA
Full-scale IQ, 35; non-verbal IQ, 40; verbal IQ, 26
103281432
103337239
55808
GRCh38
Deletion
No
sanders_11_ASD_discovery_cases-13076.p1
6.7
M
ASD
NA
Full-scale IQ, 89; non-verbal IQ, 85; verbal IQ, 102
103281432
103323974
42543
GRCh38
Deletion
No
stobbe_13_ASD_discovery_cases-case4
22 yrs.
F
Asperger syndrome and depression
Epicanthal folds, tapered fingers. Negative family history. Karyotype: not performed. Fragile X testing: normal.
105235068
105594744
359677
GRCh38
Duplication
No
yingjun_17_ASD_discovery_cases-case7824
N/A
N/A
ASD
Diagnosis of ASD based on Autism Behavior Checklist (ABC) and Childhood Autism Rating Scale (CARS). No further clinical information available.
106113899
106483230
369332
GRCh38
Deletion
No
yin_16_ASD_discovery_cases-case205
N/A
N/A
ASD
Cases diagnosed with autistic disorder according to DSM-IV and confirmed by using the Chinese version of ADI-R.
101652785
101735701
82917
GRCh38
Deletion
No
Controls
Patient ID
Author, Year
Age
Gender
Primary Diagnosis
Clinical Profile
Cognitive Profile
CNV Start
CNV End
CNV Size
Genome Build
Type Method
Validation
engchuan_15_ASD_discovery_controls-control110036024487_
N/A
N/A
Control
No previous psychiatric history
106367292
106467725
100434
GRCh38
Duplication
No
engchuan_15_ASD_discovery_controls-controlB114549_1007853874
N/A
N/A
Control
No previous psychiatric history
103279072
103323974
44903
GRCh38
Deletion
No
engchuan_15_ASD_discovery_controls-controlB806145_1007873615
N/A
N/A
Control
No previous psychiatric history
103279072
103323974
44903
GRCh38
Deletion
No
engchuan_15_ASD_discovery_controls-controlB996895_1007855015
N/A
N/A
Control
No previous psychiatric history
103279072
103323974
44903
GRCh38
Deletion
No
engchuan_15_ASD_discovery_controls-controlHABC_900090_900090
N/A
N/A
Control
No previous psychiatric history
105235030
105372023
136994
GRCh38
Deletion
No
engchuan_15_ASD_discovery_controls-controlHABC_900286_900286
N/A
N/A
Control
No previous psychiatric history
105544971
105581356
36386
GRCh38
Deletion
No
engchuan_15_ASD_discovery_controls-controlHABC_900387_900387
N/A
N/A
Control
No previous psychiatric history
106251522
106291809
40288
GRCh38
Duplication
No
engchuan_15_ASD_discovery_controls-controlHABC_900453_900453
N/A
N/A
Control
No previous psychiatric history
103820158
103868550
48393
GRCh38
Deletion
No
engchuan_15_ASD_discovery_controls-controlHABC_900997_900997
N/A
N/A
Control
No previous psychiatric history
105544971
105577615
32645
GRCh38
Deletion
No
engchuan_15_ASD_discovery_controls-controlHABC_901099_901099
N/A
N/A
Control
No previous psychiatric history
103820158
103863422
43265
GRCh38
Deletion
No
engchuan_15_ASD_discovery_controls-controlHABC_901152_901152
N/A
N/A
Control
No previous psychiatric history
101910128
102115002
204875
GRCh38
Deletion
No
engchuan_15_ASD_discovery_controls-controlHABC_902559_902559
N/A
N/A
Control
No previous psychiatric history
103281432
103323974
42543
GRCh38
Deletion
No
engchuan_15_ASD_discovery_controls-controlHABC_902732_902732
N/A
N/A
Control
No previous psychiatric history
106363410
106473819
110410
GRCh38
Duplication
No
krumm_15_ASD_discovery_controls-control11310.s1
N/A
Female
Control
Unaffected sibling from the Simons Simplex Collection (SSC)
101917992
102073743
155752
GRCh38
Deletion
Yes
levy_11_ASD_discovery_controls-11707.s1
NA
F
Control
NA
NA
105621882
105656915
35034
GRCh38
Duplication
No
poultney_13_ASD_discovery_controls-control05C42628A
N/A
M
Control
NIMH Control (NIMH ID 34873)
103589680
103658405
68726
GRCh38
Duplication
No
poultney_13_ASD_discovery_controls-control05C43571
N/A
M
Control
NIMH Control (NIMH ID 20523)
106325008
106347694
22687
GRCh38
Duplication
No
poultney_13_ASD_discovery_controls-control05C45724
N/A
F
Control
NIMH Control (NIMH ID 98250)
105613382
105729501
116120
GRCh38
Duplication
No
sanders_11_ASD_discovery_controls-11073.s1
7.8
F
Control (matched sibling)
NA
NA
103279072
103337239
58168
GRCh38
Deletion
No
sanders_11_ASD_discovery_controls-11141.s1
5.2
F
Control (matched sibling)
NA
NA
102843999
102986881
142883
GRCh38
Deletion
No
sanders_11_ASD_discovery_controls-11144.s1
14
F
Control (matched sibling)
NA
NA
105544971
105585087
40117
GRCh38
Deletion
No
sanders_11_ASD_discovery_controls-11187.s1
11.1
F
Control (matched sibling)
NA
NA
103820158
103842755
22598
GRCh38
Deletion
No
sanders_11_ASD_discovery_controls-11310.s1
9.5
F
Control (matched sibling)
NA
NA
101910128
102138523
228396
GRCh38
Deletion
No
sanders_11_ASD_discovery_controls-11381.s1
7.4
M
Control (matched sibling)
NA
NA
104268829
104436571
167743
GRCh38
Duplication
No
sanders_11_ASD_discovery_controls-11422.s1
8.5
F
Control (matched sibling)
NA
NA
103820158
103839885
19728
GRCh38
Deletion
No
sanders_11_ASD_discovery_controls-11659.s1
4.8
F
Control (matched sibling)
NA
NA
106683178
106687630
4453
GRCh38
Deletion
No
sanders_11_ASD_discovery_controls-11707.s1
15.1
F
Control (matched sibling)
NA
NA
105622687
105651299
28613
GRCh38
Duplication
No
sanders_11_ASD_discovery_controls-11718.s1
23.6
F
Control (matched sibling)
NA
NA
106683178
106687630
4453
GRCh38
Deletion
No
sanders_11_ASD_discovery_controls-12117.s1
12
F
Control (matched sibling)
NA
NA
103279072
103323974
44903
GRCh38
Deletion
No
sanders_11_ASD_discovery_controls-12157.s1
12.8
M
Control (matched sibling)
NA
NA
103820158
103842755
22598
GRCh38
Deletion
No
sanders_11_ASD_discovery_controls-12238.s1
11
F
Control (matched sibling)
NA
NA
103820158
103839885
19728
GRCh38
Deletion
No
sanders_11_ASD_discovery_controls-12257.s1
4.6
M
Control (matched sibling)
NA
NA
103820158
103839885
19728
GRCh38
Deletion
No
sanders_11_ASD_discovery_controls-12303.s1
5.8
F
Control (matched sibling)
NA
NA
103820158
103839885
19728
GRCh38
Deletion
No
sanders_11_ASD_discovery_controls-12626.s1
16.3
F
Control (matched sibling)
NA
NA
106683178
106687630
4453
GRCh38
Deletion
No
sanders_11_ASD_discovery_controls-12661.s1
11.2
F
Control (matched sibling)
NA
NA
103281432
103323974
42543
GRCh38
Deletion
No
sanders_11_ASD_discovery_controls-12836.s1
4.2
M
Control (matched sibling)
NA
NA
101797638
101804938
7301
GRCh38
Deletion
No
sanders_11_ASD_discovery_controls-12888.s1
10.5
F
Control (matched sibling)
NA
NA
103735913
103903959
168047
GRCh38
Deletion
No
sanders_11_ASD_discovery_controls-12888.s1
10.5
F
Control (matched sibling)
NA
NA
101733663
102006153
272491
GRCh38
Duplication
No
sanders_11_ASD_discovery_controls-12937.s1
18.9
M
Control (matched sibling)
NA
NA
103281432
103333060
51629
GRCh38
Deletion
No
sanders_11_ASD_discovery_controls-12989.s1
11.4
F
Control (matched sibling)
NA
NA
105326605
105335364
8760
GRCh38
Deletion
No
sanders_11_ASD_discovery_controls-13051.s1
9.4
F
Control (matched sibling)
NA
NA
103820158
103839885
19728
GRCh38
Deletion
No
sanders_11_ASD_discovery_controls-13076.s1
19.5
F
Control (matched sibling)
NA
NA
103281432
103333060
51629
GRCh38
Deletion
No
sanders_11_ASD_discovery_controls-13097.s1
12.4
F
Control (matched sibling)
NA
NA
103281432
103333060
51629
GRCh38
Deletion
No
sherman_21_ASD_discovery_controls-SSC_13391.s1
NA
F
Control
Unaffected sibling from the Simons Simplex Collection. SCQ summary score: 0. Mosaic cell fraction: 0.2235. CNV occurs on the maternal haplotype.
105469576
106588042
1118467
GRCh38
Duplication
No
Cases
Patient ID
Validation Description
Primary Disorder Inheritence
Inheritence
Family Profile
Disease Segregation
Gene Content
Altered Gene Expression
brandler_18_ASD_discovery_cases-caseSSC05463
PCR
De novo
SLC39A8
celestino-soper_11_ASD_discovery_cases-11303
Unknown
Simplex
NA
RNU6-553P,PPA2
engchuan_15_ASD_discovery_cases-case13072_853
Unknown
GIMD1,LINC02173
engchuan_15_ASD_discovery_cases-case14236_2610
Unknown
LINC02428
engchuan_15_ASD_discovery_cases-case2165_1
Unknown
BANK1
engchuan_15_ASD_discovery_cases-case3192_3
Unknown
ARHGEF38-IT1,ARHGEF38
engchuan_15_ASD_discovery_cases-case3505_3
Unknown
LINC02428
engchuan_15_ASD_discovery_cases-case4460_1
Unknown
hnoonual_17_ASD_discovery_cases-caseTM13-3
Paternal
KRT8P46,LRRC37A15P,MANBA
krumm_15_ASD_discovery_cases-case11310.p1
Illumina 1M
Paternal
Simplex
Not segregated (CNV in unaffected sibling)
MTND5P5,BANK1
krumm_15_ASD_discovery_cases-case12619.p1
Illumina 1MDuo
Maternal
Simplex
Segregated
BANK1
levy_11_ASD_discovery_cases-11707.p1
Maternal
Simplex
Not segregated
ARHGEF38
mosca_16_DCD_discovery_cases-case103303
Unknown
Unknown
Unknown
DDX3P3,RNU6-635P,LINC02428,TACR3
prasad_12_ASD_discovery_cases-case146437L
Unknown
Unknown
Unknown
0 genes
sanders_11_ASD_discovery_cases-11066.p1
Unknown
Simplex (quad-proband unmatched)
Unknown
TBCK
sanders_11_ASD_discovery_cases-11073.p1
Maternal
Simplex (quad-proband matched)
Not segregated
LINC02428
sanders_11_ASD_discovery_cases-11086.p1
Maternal
Simplex (quad-proband matched)
Not segregated
LINC02428
sanders_11_ASD_discovery_cases-11090.p1
Maternal
Simplex (quad-proband matched)
Segregated
sanders_11_ASD_discovery_cases-11131.p1
Maternal
Simplex (trio)
NA
sanders_11_ASD_discovery_cases-11187.p1
Paternal
Simplex (quad-proband matched)
Not segregated
sanders_11_ASD_discovery_cases-11262.p1
Paternal
Simplex (quad-proband matched)
Not segregated
BANK1
sanders_11_ASD_discovery_cases-11297.p1
Paternal
Simplex (trio)
NA
sanders_11_ASD_discovery_cases-11298.p1
Paternal
Simplex (quad-proband matched)
Not segregated
sanders_11_ASD_discovery_cases-11301.p1
Maternal
Simplex (quad-proband matched)
Not segregated
TBCK
sanders_11_ASD_discovery_cases-11310.p1
Paternal
Simplex (quad-proband matched)
Not segregated
MTND5P5,BANK1
sanders_11_ASD_discovery_cases-11381.p1
Paternal
Simplex (quad-proband matched)
Not segregated
sanders_11_ASD_discovery_cases-11551.p1
Maternal
Simplex (quad-proband matched)
Not segregated
sanders_11_ASD_discovery_cases-11659.p1
Maternal
Simplex (quad-proband matched)
Not segregated
sanders_11_ASD_discovery_cases-11707.p1
Both parents
Simplex (quad-proband matched)
Not segregated
ARHGEF38
sanders_11_ASD_discovery_cases-11718.p1
Unknown
Simplex (quad-proband matched)
Not segregated
sanders_11_ASD_discovery_cases-11922.p1
Maternal
Simplex (quad-proband matched)
Not segregated
sanders_11_ASD_discovery_cases-12003.p1
Both parents
Simplex (trio)
NA
sanders_11_ASD_discovery_cases-12083.p1
Both parents
Simplex (quad-proband matched)
Segregated
sanders_11_ASD_discovery_cases-12158.p1
Both parents
Simplex (trio)
NA
SLC9B1
sanders_11_ASD_discovery_cases-12162.p1
Paternal
Simplex (quad-proband matched)
Not segregated
sanders_11_ASD_discovery_cases-12210.p1
Paternal
Simplex (quad-proband matched)
Not segregated
sanders_11_ASD_discovery_cases-12220.p1
Paternal
Simplex (quad-proband matched)
Not segregated
LINC02428
sanders_11_ASD_discovery_cases-12297.p1
Paternal
Simplex (quad-proband matched)
Not segregated
BANK1
sanders_11_ASD_discovery_cases-12312.p1
Both parents
Simplex (trio)
NA
sanders_11_ASD_discovery_cases-12339.p1
Paternal
Simplex (quad-proband matched)
Not segregated
sanders_11_ASD_discovery_cases-12395.p1
Maternal
Simplex (trio)
NA
sanders_11_ASD_discovery_cases-12462.p1
Paternal
Simplex (quad-proband matched)
Not segregated
BANK1
sanders_11_ASD_discovery_cases-12505.p1
Maternal
Simplex (trio)
NA
TBCK
sanders_11_ASD_discovery_cases-12619.p1
Maternal
Simplex (quad-proband matched)
Not segregated
BANK1
sanders_11_ASD_discovery_cases-12701.p1
Maternal
Simplex (quad-proband matched)
Not segregated
BANK1
sanders_11_ASD_discovery_cases-12836.p1
Paternal
Simplex (quad-proband matched)
Not segregated
BANK1
sanders_11_ASD_discovery_cases-12878.p1
Paternal
Simplex (trio)
NA
sanders_11_ASD_discovery_cases-12937.p1
Maternal
Simplex (quad-proband matched)
Not segregated
LINC02428
sanders_11_ASD_discovery_cases-13076.p1
Maternal
Simplex (quad-proband matched)
Not segregated
LINC02428
stobbe_13_ASD_discovery_cases-case4
Unknown
Unknown (possible simplex)
Unknown
RN7SL89P,RNU6-553P,EEF1A1P9,ATP5F1EP1,ARHGEF38-IT1,TET2,PPA2,ARHGEF38
yingjun_17_ASD_discovery_cases-case7824
N/A (Validation of some CNVs by FISH or qPCR was described, but the identity of validated CNVs was not reported)
Unknown
Unknown
Unknown
AIMP1,GIMD1,LINC02173,TBCK
yin_16_ASD_discovery_cases-case205
Unknown
Unknown
Unknown
RNU6-462P,BANK1
Controls
Patient ID
Validation Description
Primary Disorder Inheritence
Inheritence
Family Profile
Disease Segregation
Gene Content
Altered Gene Expression
engchuan_15_ASD_discovery_controls-control110036024487_
Unknown
GIMD1,LINC02173
engchuan_15_ASD_discovery_controls-controlB114549_1007853874
Unknown
LINC02428
engchuan_15_ASD_discovery_controls-controlB806145_1007873615
Unknown
LINC02428
engchuan_15_ASD_discovery_controls-controlB996895_1007855015
Unknown
LINC02428
engchuan_15_ASD_discovery_controls-controlHABC_900090_900090
Unknown
RN7SL89P,TET2,PPA2
engchuan_15_ASD_discovery_controls-controlHABC_900286_900286
Unknown
ARHGEF38-IT1,ARHGEF38
engchuan_15_ASD_discovery_controls-controlHABC_900387_900387
Unknown
TBCK
engchuan_15_ASD_discovery_controls-controlHABC_900453_900453
Unknown
engchuan_15_ASD_discovery_controls-controlHABC_900997_900997
Unknown
ARHGEF38-IT1,ARHGEF38
engchuan_15_ASD_discovery_controls-controlHABC_901099_901099
Unknown
engchuan_15_ASD_discovery_controls-controlHABC_901152_901152
Unknown
MTND5P5,BANK1
engchuan_15_ASD_discovery_controls-controlHABC_902559_902559
Unknown
LINC02428
engchuan_15_ASD_discovery_controls-controlHABC_902732_902732
Unknown
GIMD1,LINC02173
krumm_15_ASD_discovery_controls-control11310.s1
Illumina 1M
Paternal
MTND5P5,BANK1
levy_11_ASD_discovery_controls-11707.s1
Maternal
Simplex
NA
ARHGEF38
poultney_13_ASD_discovery_controls-control05C42628A
Unknown
TACR3
poultney_13_ASD_discovery_controls-control05C43571
Unknown
AIMP1
poultney_13_ASD_discovery_controls-control05C45724
Unknown
ARHGEF38,INTS12,GSTCD
sanders_11_ASD_discovery_controls-11073.s1
Maternal
Simplex (quad)
NA
LINC02428
sanders_11_ASD_discovery_controls-11141.s1
Unknown
Simplex (quad)
NA
PABPC1P7,ACTR3BP4,UBE2D3,CISD2,SLC9B1
sanders_11_ASD_discovery_controls-11144.s1
Paternal
Simplex (quad)
NA
ARHGEF38-IT1,ARHGEF38
sanders_11_ASD_discovery_controls-11187.s1
Paternal
Simplex (quad)
NA
sanders_11_ASD_discovery_controls-11310.s1
Paternal
Simplex (quad)
NA
MTND5P5,BANK1
sanders_11_ASD_discovery_controls-11381.s1
Paternal
Simplex (quad)
NA
sanders_11_ASD_discovery_controls-11422.s1
Maternal
Simplex (quad)
NA
sanders_11_ASD_discovery_controls-11659.s1
Maternal
Simplex (quad)
NA
sanders_11_ASD_discovery_controls-11707.s1
Both parents
Simplex (quad)
NA
ARHGEF38
sanders_11_ASD_discovery_controls-11718.s1
Unknown
Simplex (quad)
NA
sanders_11_ASD_discovery_controls-12117.s1
Maternal
Simplex (quad)
NA
LINC02428
sanders_11_ASD_discovery_controls-12157.s1
Paternal
Simplex (quad)
NA
sanders_11_ASD_discovery_controls-12238.s1
Paternal
Simplex (quad)
NA
sanders_11_ASD_discovery_controls-12257.s1
Paternal
Simplex (quad)
NA
sanders_11_ASD_discovery_controls-12303.s1
Paternal
Simplex (quad)
NA
sanders_11_ASD_discovery_controls-12626.s1
Paternal
Simplex (quad)
NA
sanders_11_ASD_discovery_controls-12661.s1
Maternal
Simplex (quad)
NA
LINC02428
sanders_11_ASD_discovery_controls-12836.s1
Paternal
Simplex (quad)
NA
BANK1
sanders_11_ASD_discovery_controls-12888.s1
Maternal
Simplex (quad)
NA
sanders_11_ASD_discovery_controls-12888.s1
Maternal
Simplex (quad)
NA
MTND5P5,BANK1
sanders_11_ASD_discovery_controls-12937.s1
Maternal
Simplex (quad)
NA
LINC02428
sanders_11_ASD_discovery_controls-12989.s1
Maternal
Simplex (quad)
NA
sanders_11_ASD_discovery_controls-13051.s1
Maternal
Simplex (quad)
NA
sanders_11_ASD_discovery_controls-13076.s1
Maternal
Simplex (quad)
NA
LINC02428
sanders_11_ASD_discovery_controls-13097.s1
Paternal
Simplex (quad)
NA
LINC02428
sherman_21_ASD_discovery_controls-SSC_13391.s1
PPA2,ARHGEF38,INTS12,GSTCD,TBCK,NPNT,PIMREGP2,EEF1A1P9,GIMD1,ARHGEF38-IT1,GSTCD-AS1,LINC02173,AIMP1,ATP5F1EP1
No Animal Model Data Available


