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Relevance to Autism

SIPA1L1 was identified as an ASD candidate gene in Wilfert et al., 2021 based on the discovery of private likely gene-disruptive (LGD) variants in this highly constrained (pLI 0.99) gene that were exclusively transmitted to three ASD probands in three independent families and its interconnectedness with other ASD candidate genes in protein-protein interaction (PPI) networks in this report.

Molecular Function

Stimulates the GTPase activity of RAP2A. Promotes reorganization of the actin cytoskeleton and recruits DLG4 to F-actin. Contributes to the regulation of dendritic spine morphogenesis.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Recent ultra-rare inherited variants implicate new autism candidate risk genes
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Mutational Landscape of Autism Spectrum Disorder Brain Tissue
ASD
Support
SIPA1L1/SPAR1 interacts with the neurabin family of proteins and is involved in GPCR signaling
Support
ASD
DD, ID

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1281R001 
 frameshift_variant 
 c.3497dup 
 p.Tyr1166Ter 
 Familial 
  
 Simplex 
 GEN1281R002 
 frameshift_variant 
 c.1219dup 
 p.Ser407LysfsTer3 
 Familial 
  
 Simplex 
 GEN1281R003 
 stop_gained 
 c.5275C>T 
 p.Gln1759Ter 
 Familial 
  
 Simplex 
 GEN1281R004 
 missense_variant 
 c.40G>A 
 p.Ala14Thr 
 Unknown 
  
  
 GEN1281R005 
 synonymous_variant 
 c.2553C>T 
 p.Ala851%3D 
 Unknown 
  
  
 GEN1281R006 
 synonymous_variant 
 c.325C>T 
 p.Leu109%3D 
 De novo 
  
  
 GEN1281R007 
 synonymous_variant 
 c.4626C>A 
 p.Leu1542%3D 
 De novo 
  
  
 GEN1281R008 
 missense_variant 
 c.2225A>G 
 p.His742Arg 
 Familial 
 Maternal 
 Simplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
14
Deletion-Duplication
 10
 
14
Duplication
 3
 

No Animal Model Data Available

 

No Interactions Available
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