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Relevance to Autism

RIF1 was identified as an ASD candidate gene in Wilfert et al., 2021 based on the discovery of private likely gene-disruptive (LGD) variants in this highly constrained (pLI 0.99) gene that were exclusively transmitted to five ASD probands in four independent families.

Molecular Function

This gene encodes a protein that shares homology with the yeast teleomere binding protein, Rap1 interacting factor 1. This protein localizes to aberrant telomeres and may be involved in DNA repair.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Recent ultra-rare inherited variants implicate new autism candidate risk genes
ASD
Support
Mutational Landscape of Autism Spectrum Disorder Brain Tissue
ASD
Support
Integrating de novo and inherited variants in 42
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1266R001 
 frameshift_variant 
 c.6266_6269del 
 p.Thr2089SerfsTer9 
 Familial 
  
  
 GEN1266R002 
 stop_gained 
 c.5332C>T 
 p.Gln1778Ter 
 Familial 
  
  
 GEN1266R003 
 frameshift_variant 
 c.5402_5403del 
 p.Lys1801ArgfsTer3 
 Familial 
  
  
 GEN1266R004 
 frameshift_variant 
 c.5607_5608del 
 p.Asn1871CysfsTer29 
 Familial 
  
  
 GEN1266R005 
 synonymous_variant 
 c.654G>A 
 p.Gln218%3D 
 Unknown 
  
  
 GEN1266R006 
 synonymous_variant 
 c.777A>G 
 p.Leu259%3D 
 De novo 
  
  
 GEN1266R007 
 synonymous_variant 
 c.2712T>C 
 p.Tyr904%3D 
 De novo 
  
  
 GEN1266R008 
 synonymous_variant 
 c.5292G>A 
 p.Lys1764%3D 
 De novo 
  
  
 GEN1266R009 
 missense_variant 
 c.1427A>G 
 p.Asn476Ser 
 De novo 
  
  
 GEN1266R010 
 stop_gained 
 c.4823_4825del 
 p.Ser1608_Glu1609delinsTer 
 De novo 
  
  
 GEN1266R011 
 frameshift_variant 
 c.5117delinsTTT 
 p.Ser1706PhefsTer22 
 De novo 
  
  
 GEN1266R012 
 missense_variant 
 c.5147T>G 
 p.Leu1716Arg 
 De novo 
  
  
 GEN1266R013 
 missense_variant 
 c.6587C>T 
 p.Ser2196Leu 
 De novo 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
2
Duplication
 1
 
2
Duplication
 1
 
2
Duplication
 1
 
2
Duplication
 1
 
2
Duplication
 1
 
2
Duplication
 1
 
2
Deletion
 7
 
2
Deletion
 5
 
2
Deletion
 1
 
2
Deletion-Duplication
 26
 
2
Deletion
 2
 
2
Deletion
 1
 
2
Deletion
 10
 

No Animal Model Data Available

 

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