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Relevance to Autism

This gene was identified by TADA (transmission and de novo association) analysis of a combined dataset from the Simons Simplex Collection (SSC) and the Autism Sequencing Consortium (ASC) as a gene strongly enriched for variants likely to affect ASD risk with a false discovery rate (FDR) of <0.1 (Sanders et al., 2015); among the variants identified in this gene was one de novo loss-of-function (LoF) variant.

Molecular Function

This gene encodes a member of the receptor protein tyrosine kinase family of proteins that transduce extracellular signals across the cell membrane. The encoded protein lacks detectable catalytic tyrosine kinase activity, is involved in the Wnt signaling pathway and plays a role in multiple cellular processes including polarity and adhesion.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Insights into Autism Spectrum Disorder Genomic Architecture and Biology from 71 Risk Loci.
ASD
Support
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD
Support
Targeted sequencing identifies 91 neurodevelopmental-disorder risk genes with autism and developmental-disability biases.
DD
Support
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Mutational Landscape of Autism Spectrum Disorder Brain Tissue
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN769R001 
 stop_gained 
 c.1708C>T 
 p.Arg570Ter 
 De novo 
  
 Simplex 
 GEN769R002 
 missense_variant 
 c.851G>A 
 p.Arg284His 
 De novo 
  
 Simplex 
 GEN769R003 
 missense_variant 
 c.1709G>A 
 p.Arg570Gln 
 De novo 
  
 Simplex 
 GEN769R004 
 synonymous_variant 
 c.1545A>C 
 p.Pro515= 
 De novo 
  
  
 GEN769R005 
 frameshift_variant 
 c.1386_1387delGAinsA 
 p.Asn463MetfsTer20 
 De novo 
  
  
 GEN769R006 
 missense_variant 
 c.55G>A 
 p.Ala19Thr 
 Unknown 
  
  
 GEN769R007 
 missense_variant 
 c.34T>A 
 p.Ser12Thr 
 De novo 
  
  
 GEN769R008 
 synonymous_variant 
 c.507A>G 
 p.Gln169%3D 
 De novo 
  
 Simplex 
 GEN769R009 
 stop_gained 
 c.785del 
 p.Pro262ArgfsTer35 
 Familial 
 Maternal 
 Multiplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
6
Deletion-Duplication
 12
 
6
Deletion-Duplication
 1
 
6
Deletion
 1
 
6
Deletion
 1
 

No Animal Model Data Available


Interactor Symbol Interactor Name Interactor Organism Entrez ID Uniprot ID Interaction Type Evidence Reference
ROR2 receptor tyrosine kinase-like orphan receptor 2 4920 Q01974 IP/WB
Martinez S , et al. 2015
WNT1 wingless-type MMTV integration site family member 1 7471 P04628 IP/WB
Martinez S , et al. 2015
WNT5A wingless-type MMTV integration site family, member 5A 7474 P41221 IP/WB
Martinez S , et al. 2015

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