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6p21.1CNV Type: Deletion-Duplication


Largest CNV size: 165374 bp

Statistics Box:
Number of Reports: 12



Summary Information

Summary statement in development

Additional Locus Information

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USCS Symbol             NCBI Symbol

Decipher

            Decipher Symbol

References

Major Reports

Title
Author, Year
Report Class
CNV Type
An evidence-based approach to establish the functional and clinical significance of copy number variants in intellectual and developmental disabili...
Deletion-Duplication
The clinical significance of small copy number variants in neurodevelopmental disorders.
Duplication
Excess of rare, inherited truncating mutations in autism.
Deletion

Minor Reports

Title
Author, Year
Report Class
CNV Type
Multiple recurrent de novo CNVs, including duplications of the 7q11.23 Williams syndrome region, are strongly associated with autism.
Deletion-Duplication
Exonic deletions in AUTS2 cause a syndromic form of intellectual disability and suggest a critical role for the C terminus.
Duplication
Prospective diagnostic analysis of copy number variants using SNP microarrays in individuals with autism spectrum disorders.
Duplication
Transmission disequilibrium of small CNVs in simplex autism.
Deletion-Duplication
Identification of small exonic CNV from whole-exome sequence data and application to autism spectrum disorder.
Duplication
Performance of case-control rare copy number variation annotation in classification of autism.
Deletion
Chromosomal microarray analysis in clinical evaluation of neurodevelopmental disorders-reporting a novel deletion of SETDB1 and illustration of cou...
Deletion
Copy-number variations are enriched for neurodevelopmental genes in children with developmental coordination disorder.
Duplication
Paternally inherited cis-regulatory structural variants are associated with autism.
Deletion

Cases

Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
 asadollahi_14_NDD_discovery_cases
 Patients screened for rare non-polymorphic exonic CNVs sizing 1-500 kb
 714
 Patients with undiagnosed neurodevelopmental disorders (NDD) with or without further congenital anomalies
 N/A
 N/A
 236000
 0
 1
 1
 beunders_13_DD/ID/ASD_discovery_cases
 Individuals from ten diagnostic centers in the Netherlands, Belgium, Great Britian, the United States, and Canada
 49684
 Intellectual disability and/or mulitple congenital anomalies
 NA
 NA
 87669
 0
 1
 1
 brandler_18_ASD_replication_cases
 Affected individuals from MSSNG cohort (1395 cases from 1187 families) and the Simons Simplex 2 (SSC2) cohort (584 cases from simplex quad families)
 1979
 Cases diagnosed with ASD
 N/A
 N/A
 5080
 1
 0
 1
 engchuan_15_ASD_discovery_cases
 Samples from the Autism Genome Project (AGP)
 1892
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 N/A
 85.78% Male
 57791
 1
 0
 1
 kaminsky_11_DD/ID/ASD_discovery_cases
 Cases from the International Standards for Cytogenomic Arrays (ISCA) consortium
 15749
 Unexplained developmental delay, intellectual disability, dysmorphic features, multiple congenital anomalies, autism spectrum disorders, or clinical features suggestive of a chromosomal syndrome
 NA
 NA
 2221985
 1
 1
 2
 krumm_13_ASD_discovery_cases
 Probands from quad families ascertained as part of the Simons Simplex Collection (SSC); CNVs detected using data from four previously published exome sequencing studies (O'Roak et al., 2011; Iossifov et al., 2012; O'Roak et al., 2012; Sanders et al., 2012)
 411
 Diagnosis of ASD. Social Responsiveness Scale (SRS) used as a quantitative measure of social deficits
 N/A
 81.265% Male
 74740
 1
 1
 2
 krumm_15_ASD_discovery_cases
 Probands from the Simons Simplex Collection
 2377
 Diagnosis of ASD
 N/A
 N/A
 3523
 2
 0
 2
 mosca_16_DCD_discovery_cases
 Participants recruited as part of a multidisciplinary study at the Alberta Children's Hospital (Calgary, Alberta, Canada)
 82
 All cases met diagnostic criteria for developmental coordination disorder (DCD) with or without co-occurring ADHD and/or reading disorder.
 Range, 8-17 years (Mean, 10.06 2.92 yrs.)
 N/A
 31138
 0
 1
 1
 nava_13_ASD_discovery_cases
 Subjects recruited in the Centre de Reference deficiences intellectuelles de causes rares', the 'Centre Diagnostic Autisme', Pitie-Salpetriere Hospital (Paris, France) or the Fondation Lejeune over a period of 3 years (20092011).
 194
 Cases assessed with ADI-R
 N/A
 83.5% Male
 335000
 0
 1
 1
 poultney_13_ASD_discovery_cases
 ASD cases of European ancestry from AGRE retained after filtering (original cohort size of 432 cases)
 299
 Cases diagnosed with ASD
 N/A
 79.86% Male (before filtering)
 11914
 0
 1
 1
 sanders_11_ASD_discovery_cases
 Autistic probands from the Simons Simplex Collection (SSC). 872 probands in quartet families, 272 probands in trios.
 1124
 ASD diagnosis: 89.5% autism; 8.5% PDD-NOS, 2% Asperger syndrome. Mean full-scale IQ 85.1 1.5 (mean verbal IQ, 81.9 1.7; mean non-verbal IQ, 88.4 1.4)
 Mean, 9.1 yrs.
 86.1% Male
 165374
 3
 2
 5
 xu_16_ASD/DD/ID_discovery_cases
 Patients referred to the Duke Autism Genetics Clinic for clinical genetic evaluation of ASD and DD/ID from 2010-2014
 115
 66 cases with confirmed primary diagnosis of ASD (DSM-IV, DSM-5, ADOS, and ADI-R used to support ASD diagnosis), 49 cases with primary diagnosis of DD or ID (based on IQ and DQ scores).
 Range, 18 months-15.1 years (mean age, 5.7 years)
 72.17% Male
 123000
 1
 0
 1

Controls

Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
 beunders_13_DD/ID/ASD_discovery_controls
 Control cohort comprised of Ottawa Heart Institute (OHI) controls from Canada (n=1234), POPGEN controls from Germany (n=1123), SAGE controls from the United States (n=1287), Welcome Trust (WTCCC) controls (n=4783), HapMap Phase 3 controls (n=1056), Lowlands Consortium controls (n=981), and a combined adult controls set (HGDP, NINDS, and others; n=6239)
 16784
 Control
 NA
 NA
 87669
 NA
 NA
 NA
 brandler_18_ASD_replication_controls
 Unaffected individuals from the Simons Simplex 2 (SSC2) cohort (584 controls from simplex quad families)
 584
 Control (unaffected siblings from simplex quad families)
 N/A
 N/A
 5080
 1
 0
 1
 engchuan_15_ASD_discovery_controls
 Platform-matched controls from three large studies: SAGE (Study of Addiction Genetics and Environment), Ontario Colorectal Cancer study, and HABC (Health Aging and Body Composition)
 2342
 Controls; subjects had no previous psychiatric history
 N/A
 46.67% Male
 232777
 2
 1
 3
 kaminsky_11_DD/ID/ASD_discovery_controls
 Controls from the International Standards for Cytogenomic Arrays (ISCA) consortium
 10118
 Controls
 NA
 NA
 NA
 NA
 NA
 NA
 krumm_13_ASD_discovery_controls
 Unaffected siblings of ASD probands from quad families ascertained as part of the Simons Simplex Collection (SSC); CNVs detected using data from four previously published exome sequencing studies (O'Roak et al., 2011; Iossifov et al., 2012; O'Roak et al., 2012; Sanders et al., 2012)
 411
 Control (unaffected siblings of ASD probands). Social Responsiveness Scale (SRS) used as a quantitative measure of social deficits
 N/A
 46.47% Male
 8204
 3
 1
 4
 krumm_15_ASD_discovery_controls
 Unaffected siblings from quad families from the Simons Simplex Collection
 1786
 Control
 N/A
 N/A
 22493
 1
 2
 3
 poultney_13_ASD_discovery_controls
 Controls matched for European ancestry from NIMH and CEPH retained after filtering (original cohort size of 379 controls)
 260
 Control
 N/A
 47.49% Male (before filtering)
 0
 0
 0
 0
 sanders_11_ASD_discovery_controls
 Matched siblings of autistic probands from the Simons Simplex Collection (SSC).
 872
 Controls
 Mean, 10.0 yrs.
 
 39111
 2
 0
 2

Cases

Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
 asadollahi_14_NDD_discovery_cases
  Predominantly European
 Array SNP
  Affymetrix 6.0, Affymetrix Cytogenetics 2.7, Affymetrix CytoScan HD
 HMM
 Affymetrix ChAS v.1.0.1
 MLPA
 beunders_13_DD/ID/ASD_discovery_cases
  NA
 aCGH, array SNP, solid phase hybridization
  Multiple platforms including Agilent 105K/180K/244K, custom Roche Nimblegen 135K, Affymetrix 2.7M/6.0, Illumina Omni 2.5M, SignatureChipOS v2.0, & BlueGnome CytoChip ISCA 60K
 
 
 None
 brandler_18_ASD_replication_cases
  N/A
 WGS
  Illumina HiSeq X10
 ForestSV, Lumpy, Manta, Mobster, SV2
 
 None
 engchuan_15_ASD_discovery_cases
  Caucasian
 Solid phase hybridization
  Illumina 1M
 
 
 None
 kaminsky_11_DD/ID/ASD_discovery_cases
  NA
 aCGH
  Agilent 44K, Agilent 105K
 
 Feature Extraction, DNA Analytics
 FISH, qPCR, MLPA, aCGH, standard G-banded chromosome analysis
 krumm_13_ASD_discovery_cases
  N/A
 WES
  Whole exome sequencing platforms used in four recent publications (O'Roak et al., 2011; Sanders et al., 2012; O'Roak et al., 2012, and Iossifov et al., 2012)
 DNACopy, CGHCall
 CoNIFER
 None
 krumm_15_ASD_discovery_cases
  N/A
 WES
 
 CoNIFER, XHMM
 
 Solid phase hybridization (Illumina 1M, 1 M Duo, or Omni 2.5)
 mosca_16_DCD_discovery_cases
  Canada
 Solid phase hybridization
  Illumina HumanOmni2.5-Quad BeadChip
 iPattern, PennCNV, QuantiSNP, CNVPartition
 
 None
 nava_13_ASD_discovery_cases
  France
 Solid phase hybridization
  Illumina cytoSNP-12, Illumina 660W-Quad, Illumina 370CNV-Quad
 
 GenomeStudio v.2011.1, CNVPartition v.3.1.6
 None
 poultney_13_ASD_discovery_cases
  European
 WES
  Agilent SureSelect Human All Exon v.2
 XHMM
 
 None
 sanders_11_ASD_discovery_cases
  White non-Hispanic, 74.5%; mixed, 9.3%, Asian, 4.3%, White Hispanic, 4.0%, African-American, 3.8%; other, 4.2&
 Solid phase hybridization
  Illumina 1M v1, Illumina 1M v3
 PennCNV, QuantiSNP, GNOSIS
 
 
 xu_16_ASD/DD/ID_discovery_cases
  N/A
 aCGH, array SNP
  BlueGnome CytoChip v2, Affymetrix 6.0, Affymetrix Cytoscan HD
 
 Affymeytrix Genotyping Console v3.0.2
 None

Controls

Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
  beunders_13_DD/ID/ASD_discovery_controls
  NA
  aCGH, array SNP, solid phase hybridization
  Affymetrix 6.0, Illumina 1M, Illumina 240K-650K, Agilent 105K/185K
 
 
 
  brandler_18_ASD_replication_controls
  N/A
  WGS
  Illumina HiSeq X10
  ForestSV, Lumpy, Manta, Mobster, SV2
 
  None
  engchuan_15_ASD_discovery_controls
  Caucasian
  Solid phase hybridization
  Illumina 1M
 
 
  None
  kaminsky_11_DD/ID/ASD_discovery_controls
  NA
  aCGH
  Agilent 44K, Agilent 105K
 
  Feature Extraction, DNA Analytics
 
  krumm_13_ASD_discovery_controls
  N/A
  WES
  Whole exome sequencing platforms used in four recent publications (O'Roak et al., 2011; Sanders et al., 2012; O'Roak et al., 2012, and Iossifov et al., 2012)
  DNACopy, CGHCall
  CoNIFER
  None
  krumm_15_ASD_discovery_controls
  N/A
  WES
 
  CoNIFER, XHMM
 
  Solid phase hybridization (Illumina 1M, 1 M Duo, or Omni 2.5)
  poultney_13_ASD_discovery_controls
  European
  WES
  Agilent SureSelect Human All Exon v.2
  XHMM
 
 
  sanders_11_ASD_discovery_controls
 
  Solid phase hybridization
  Illumina 1M v1 or Illumina 1M v3
  PennCNV, QuantiSNP, GNOSIS
 
 

Cases

Patient ID
Author, Year
Age
Gender
Primary Diagnosis
Clinical Profile
Cognitive Profile
CNV Start
CNV End
CNV Size
Genome Build
Type Method
Validation
  asadollahi_14_NDD_discovery_cases-case60045
 N/A
 M
 NDD
 Case with unspecified neurodevelopmental disorder
 
 42072050
 42307839
  235790
 GRCh38
 Duplication
 Yes
  beunders_13_DD/ID/ASD_discovery_cases-case30
 NA
 M
 DD/ID and/or MCA
 Clinical profile: N/A
 Cognitive profile: N/A
 42086470
 42174139
  87670
 GRCh38
 Duplication
 No
  brandler_18_ASD_replication_cases-caseSSC04826
 N/A
 M
 ASD
 Case from SSC_phase2 cohort
 
 43528882
 43533962
  5081
 GRCh38
 Deletion
 No
  engchuan_15_ASD_discovery_cases-case8531_201
 N/A
 N/A
 ASD
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 
 40816931
 40874722
  57792
 GRCh38
 Deletion
 No
  kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00000979
 NA
 NA
 Developmental delay/intellectual disability/ASD
 Clinical profile NA
 Cognitive profile NA
 42368558
 44590544
  2221987
 GRCh38
 Deletion
 Yes
  kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00004767
 NA
 NA
 Developmental delay/intellectual disability/ASD
 Clinical profile NA
 Cognitive profile NA
 42133625
 44106194
  1972570
 GRCh38
 Duplication
 Yes
  krumm_13_ASD_discovery_cases-case12467.p1
 N/A
 M
 ASD
 ASD proband from SSC quad family 12467. SRS score of 70.
 Full-scale IQ (FSIQ) score of 102.
 43528827
 43534007
  5181
 GRCh38
 Deletion
 No (not tested)
  krumm_13_ASD_discovery_cases-case12743.p1
 N/A
 M
 ASD
 ASD proband from SSC quad family 12743. SRS score of 78.
 Full-scale IQ (FSIQ) score of 116.
 41276124
 41350864
  74741
 GRCh38
 Duplication
 No (not tested)
  krumm_15_ASD_discovery_cases-case12467.p1
 N/A
 Male
 ASD
 Proband from the Simons Simplex Collection (SSC). Family type: Quad
 
 43528949
 43531575
  2627
 GRCh38
 Deletion
 Yes
  krumm_15_ASD_discovery_cases-case14152.p1
 N/A
 Male
 ASD
 Proband from the Simons Simplex Collection (SSC). Family type: Quad
 
 44306922
 44310445
  3524
 GRCh38
 Deletion
 Yes
  mosca_16_DCD_discovery_cases-case124803
 N/A
 M
 DCD (with or without ADHD and/or RD)
 Ancestry: unknown. Family history: maternal diagnosis unknown; paternal diagnosis unknown.
 
 44005108
 44036245
  31138
 GRCh38
 Duplication
 No
  nava_13_ASD_discovery_cases-Fam820Proband9980
 N/A
 M
 ASD
 Additional clinical profile info N/A
 ID
 43440267
 43775504
  335238
 GRCh38
 Duplication
 No
  poultney_13_ASD_discovery_cases-case99HI0671A
 N/A
 M
 ASD
 ASD case from AGRE (AGRE ID AU033403; NDAR ID NDAR_INVFP134WLL)
 
 44248628
 44260541
  11914
 GRCh38
 Duplication
 No
  sanders_11_ASD_discovery_cases-11196.p1
 12.1
 M
 Autism
 NA
 Full-scale IQ, 112; non-verbal IQ, 117; verbal IQ, 106
 44500152
 44505117
  4966
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-11569.p1
 9.1
 F
 Autism
 NA
 Full-scale IQ, 59; non-verbal IQ, 67; verbal IQ, 45
 42911551
 42923284
  11734
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-12451.p1
 9.6
 M
 ASD
 NA
 Full-scale IQ, 75; non-verbal IQ, 77; verbal IQ, 77
 45031912
 45071023
  39112
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-12695.p1
 12.3
 M
 Autism
 NA
 Full-scale IQ, 49; non-verbal IQ, 56; verbal IQ, 35
 40561063
 40640509
  79447
 GRCh38
 Duplication
 No
  sanders_11_ASD_discovery_cases-12743.p1
 10.1
 M
 Autism
 NA
 Full-scale IQ, 116; non-verbal IQ, 114; verbal IQ, 108
 41256216
 41421590
  165375
 GRCh38
 Duplication
 No
  xu_16_ASD/DD/ID_discovery_cases-case24
 N/A
 N/A
 Developmental delay
 Primary diagnosis of developmental delay based on DQ scores.
 
 44892930
 45016113
  123184
 GRCh38
 Deletion
 No

Controls

Patient ID
Author, Year
Age
Gender
Primary Diagnosis
Clinical Profile
Cognitive Profile
CNV Start
CNV End
CNV Size
Genome Build
Type Method
Validation
  brandler_18_ASD_replication_controls-controlSSC04836
  N/A
  F
  control
  Control from SSC_phase2 cohort
 
  43528882
  43533962
  5081
  GRCh38
  Deletion
  No
  engchuan_15_ASD_discovery_controls-control110036024602_
  N/A
  N/A
  Control
  No previous psychiatric history
 
  42071834
  42304611
  232778
  GRCh38
  Duplication
  No
  engchuan_15_ASD_discovery_controls-controlHABC_900055_900055
  N/A
  N/A
  Control
  No previous psychiatric history
 
  44967604
  45014856
  47253
  GRCh38
  Deletion
  No
  engchuan_15_ASD_discovery_controls-controlHABC_902488_902488
  N/A
  N/A
  Control
  No previous psychiatric history
 
  40816931
  40876263
  59333
  GRCh38
  Deletion
  No
  krumm_13_ASD_discovery_controls-control12467.s1
  N/A
  F
  Control
  Unaffected sibling from SSC quad family 12467. SRS score of 47.
 
  43528158
  43534007
  5850
  GRCh38
  Deletion
  No (not tested)
  krumm_13_ASD_discovery_controls-control12637.s1
  N/A
  M
  Control
  Unaffected sibling from SSC quad family 12637. SRS score of 40.
 
  42916069
  42924273
  8205
  GRCh38
  Deletion
  No (not tested)
  krumm_13_ASD_discovery_controls-control13335.s1
  N/A
  M
  Control
  Unaffected sibling from SSC quad family 13335. SRS score of 36.
 
  41741795
  41742489
  695
  GRCh38
  Deletion
  No (not tested)
  krumm_13_ASD_discovery_controls-control13825.s1
  N/A
  F
  Control
  Unaffected sibling from SSC quad family 13825. SRS score of 71.
 
  43635875
  43636646
  772
  GRCh38
  Duplication
  No (not tested)
  krumm_15_ASD_discovery_controls-control12637.s1
  N/A
  Male
  Control
  Unaffected sibling from the Simons Simplex Collection (SSC)
 
  42916069
  42924273
  8205
  GRCh38
  Deletion
  Yes
  krumm_15_ASD_discovery_controls-control13825.s1
  N/A
  Female
  Control
  Unaffected sibling from the Simons Simplex Collection (SSC)
 
  43635875
  43645325
  9451
  GRCh38
  Duplication
  Yes
  krumm_15_ASD_discovery_controls-control14425.s1
  N/A
  Female
  Control
  Unaffected sibling from the Simons Simplex Collection (SSC)
 
  42962211
  42984704
  22494
  GRCh38
  Duplication
  Yes
  sanders_11_ASD_discovery_controls-12637.s1
  5
  M
  Control (matched sibling)
  NA
  NA
  42911551
  42925096
  13546
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-12637.s1
  5
  M
  Control (matched sibling)
  NA
  NA
  45031912
  45071023
  39112
  GRCh38
  Deletion
  No

Cases

Patient ID
Validation Description
Primary Disorder Inheritence
Inheritence
Family Profile
Disease Segregation
Gene Content
Altered Gene Expression
 asadollahi_14_NDD_discovery_cases-case60045
 MLPA
 
 Maternal
 Unknown
 Unknown
 MRPS10,C6orf132,GUCA1A,GUCA1B,TAF8,TRERF1
 
 beunders_13_DD/ID/ASD_discovery_cases-case30
 
 
 Maternal
 Unknown
 Unknown
 C6orf132,GUCA1A,TAF8
 
 brandler_18_ASD_replication_cases-caseSSC04826
 No validation step reported
 
 Maternal
 
 
 XPO5,POLR1C
 
 engchuan_15_ASD_discovery_cases-case8531_201
 
 
 Unknown
 
 
 
 
 kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00000979
 FISH, qPCR, MLPA, aCGH, or standard G-banded chromosome analysis
 
 Unknown
 Unknown
 Unknown
 RNU6-890P,ATP6V0CP3,RPL7L1,C6orf226,PTCRA,CNPY3,RPL24P4,GNMT,MEA1,KLHDC3,RN7SL403P,DNPH1,RPL12P47,RPS2P28,MIR6780B,RNU6-1113P,LRRC73,POLH-AS1,LINC02537,C6orf223,RN7SL811P,MYMX,SLC35B2,MIR4647,NFKBIE,MIR4642,PRPH2,TBCC,PEX6,RRP36,CUL7,KLC4,MRPL2,SRF,CUL9,SLC22A7,CRIP3,ZNF318,ABCC10,DLK2,TJAP1,XPO5,POLH,GTPBP2,MAD2L1BP,MRPS18A,MRPL14,TMEM63B,SLC29A1,HSP90AB1,TCTE1,SPATS1,TRERF1,UBR2,BICRAL,PTK7,TTBK1,POLR1C,YIPF3,RSPH9,VEGFA,CAPN11,TMEM151B,AARS2,CDC5L,PPP2R5D
 
 kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00004767
 FISH, qPCR, MLPA, aCGH, or standard G-banded chromosome analysis
 
 De novo
 Unknown
 Unknown
 MRPS10,RNU6-890P,ATP6V0CP3,RPL7L1,C6orf226,PTCRA,CNPY3,RPL24P4,GNMT,MEA1,KLHDC3,RN7SL403P,DNPH1,RPL12P47,RPS2P28,MIR6780B,RNU6-1113P,LRRC73,POLH-AS1,LINC02537,C6orf223,C6orf132,GUCA1A,GUCA1B,PRPH2,TBCC,PEX6,RRP36,CUL7,KLC4,MRPL2,SRF,CUL9,SLC22A7,CRIP3,ZNF318,ABCC10,DLK2,TJAP1,XPO5,POLH,GTPBP2,MAD2L1BP,MRPS18A,TRERF1,UBR2,BICRAL,PTK7,TTBK1,POLR1C,YIPF3,RSPH9,VEGFA,PPP2R5D
 
 krumm_13_ASD_discovery_cases-case12467.p1
 
 
 Maternal
 Simplex
 Not segregated
 XPO5,POLR1C
 
 krumm_13_ASD_discovery_cases-case12743.p1
 
 
 Maternal
 Simplex
 Segregated
 RNU6-643P,TREM1,NCR2
 
 krumm_15_ASD_discovery_cases-case12467.p1
 1M-Duov3
 
 Maternal
 Simplex
 Segregated
 XPO5,POLR1C
 
 krumm_15_ASD_discovery_cases-case14152.p1
 Omni2.5-4v1
 
 Paternal
 Simplex
 Segregated
 TMEM151B,AARS2
 
 mosca_16_DCD_discovery_cases-case124803
 
 
 Unknown
 Unknown
 Unknown
 C6orf223
 
 nava_13_ASD_discovery_cases-Fam820Proband9980
 
 
 Maternal
 Simplex
 Unknown
 RNU6-1113P,LRRC73,POLH-AS1,ABCC10,DLK2,TJAP1,XPO5,POLH,GTPBP2,MAD2L1BP,MRPS18A,POLR1C,YIPF3,RSPH9,VEGFA
 
 poultney_13_ASD_discovery_cases-case99HI0671A
 
 
 Unknown
 Unknown (likely multiplex/AGRE)
 Unknown
 SLC35B2,MIR4647,NFKBIE,HSP90AB1
 
 sanders_11_ASD_discovery_cases-11196.p1
 
 
 Maternal
 Simplex (quad-proband matched)
 Segregated
 
 
 sanders_11_ASD_discovery_cases-11569.p1
 
 
 Maternal
 Simplex (quad-proband matched)
 Not segregated
 PTCRA
 
 sanders_11_ASD_discovery_cases-12451.p1
 
 
 Maternal
 Simplex (quad-proband matched)
 Not segregated
 SUPT3H
 
 sanders_11_ASD_discovery_cases-12695.p1
 
 
 Maternal
 Simplex (quad-proband matched)
 Segregated
 LRFN2
 
 sanders_11_ASD_discovery_cases-12743.p1
 
 
 Maternal
 Simplex (quad-proband matched)
 Not segregated
 RNU6-643P,TREM1,NCR2
 
 xu_16_ASD/DD/ID_discovery_cases-case24
 
 
 Maternal
 
 
 NUDT19P4,SUPT3H
 

Controls

Patient ID
Validation Description
Primary Disorder Inheritence
Inheritence
Family Profile
Disease Segregation
Gene Content
Altered Gene Expression
brandler_18_ASD_replication_controls-controlSSC04836
  No validation step reported
 
  Maternal
 
 
  XPO5,POLR1C
 
engchuan_15_ASD_discovery_controls-control110036024602_
 
 
  Unknown
 
 
  MRPS10,C6orf132,GUCA1A,GUCA1B,TAF8,TRERF1
 
engchuan_15_ASD_discovery_controls-controlHABC_900055_900055
 
 
  Unknown
 
 
  SUPT3H
 
engchuan_15_ASD_discovery_controls-controlHABC_902488_902488
 
 
  Unknown
 
 
 
 
krumm_13_ASD_discovery_controls-control12467.s1
 
 
  Maternal
  Simplex
 
  XPO5,POLR1C
 
krumm_13_ASD_discovery_controls-control12637.s1
 
 
  Paternal
  Simplex
 
  PTCRA
 
krumm_13_ASD_discovery_controls-control13335.s1
 
 
  Maternal
  Simplex
 
  PGC
 
krumm_13_ASD_discovery_controls-control13825.s1
 
 
  Paternal
  Simplex
 
  MAD2L1BP
 
krumm_15_ASD_discovery_controls-control12637.s1
  Illumina 1MDuo
 
  Paternal
 
 
  PTCRA
 
krumm_15_ASD_discovery_controls-control13825.s1
  Omni2.5-4v1
 
  Paternal
 
 
  MAD2L1BP,RSPH9
 
krumm_15_ASD_discovery_controls-control14425.s1
  Omni2.5-4v1
 
  Paternal
 
 
  GNMT,PEX6,PPP2R5D
 
sanders_11_ASD_discovery_controls-12637.s1
 
 
  Paternal
  Simplex (quad)
  NA
  PTCRA
 
sanders_11_ASD_discovery_controls-12637.s1
 
 
  Paternal
  Simplex (quad)
  NA
  SUPT3H
 

No Animal Model Data Available
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