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Relevance to Autism

Two de novo loss-of-function (LoF) variants and a de novo missense variant in the PSMD6 gene have been identified in ASD probands from the Autism Sequencing Consortium, the SPARK cohort, and the MSSNG cohort (Satterstrom et al., 2020; Zhou et al., 2022; Trost et al., 2022), while an additional protein-truncating variant in this gene was observed in an ASD proband, compared to none in controls, from a case-control cohort (Trost et al., 2022). Transmission and de novo association (TADA) analysis of whole-exome and whole-genome sequencing data from the Autism Sequencing Consortium, the Simons Simplex Collection, the MSSNG cohort, and the SPARK cohort in Trost et al., 2022 identified PSMD6 as an ASD-associated gene with a false discovery rate (FDR) < 0.1.

Molecular Function

This gene encodes a member of the protease subunit S10 family. The encoded protein is a subunit of the 26S proteasome which colocalizes with DNA damage foci and is involved in the ATP-dependent degradation of ubiquinated proteins.

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References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Recent Recommendation
Genomic architecture of autism from comprehensive whole-genome sequence annotation
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1374R001 
 missense_variant 
 c.373C>T 
 p.Arg125Cys 
 De novo 
  
  
 GEN1374R002 
 stop_gained 
 c.1092G>A 
 p.Trp364Ter 
 De novo 
  
 Simplex 
 GEN1374R003 
 frameshift_variant 
 c.753_754del 
 p.His251GlnfsTer14 
 De novo 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
3
Deletion
 1
 
3
Deletion
 8
 
3
Deletion
 1
 
3
Deletion
 2
 

No Animal Model Data Available

 

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