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Relevance to Autism

A de novo nonsense variant, an paternally-inherited splice-site variant, and a paternally-inherited damaging missense variant in the PRPF39 gene were identified in ASD probands from the Autism Sequencing Consortium in De Rubeis et al., 2014. A maternally-inherited splice-site variant in this gene was later observed in an ASD proband from the Simons Simplex Collection in Krumm et al., 2015. Transmission and De Novo Association (TADA) analysis of a combined cohort consisting of 536 Chinese ASD probands and 1457 Chinese controls, as well as ASD probands and controls from the Simons Simplex Collection and the Autism Sequencing Consortium, in Guo et al., 2017 identified PRPF39 as an ASD candidate gene with a PTADA of 0.003073.

Molecular Function

Involved in pre-mRNA splicing

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD
Support
Excess of rare, inherited truncating mutations in autism.
ASD
Recent Recommendation
Targeted sequencing and functional analysis reveal brain-size-related genes and their networks in autism spectrum disorders.

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN953R001 
 stop_gained 
 c.644G>A 
 p.Trp215Ter 
 De novo 
  
  
 GEN953R002 
 splice_site_variant 
 c.-19-1G>T 
  
 Familial 
 Paternal 
  
 GEN953R003 
 missense_variant 
 c.142T>C 
 p.Ser48Pro 
 Familial 
 Paternal 
  
 GEN953R004 
 splice_site_variant 
 c.570-2A>G 
  
 Familial 
  
 Simplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
14
Deletion
 2
 
14
Deletion
 1
 
14
Deletion-Duplication
 14
 

No Animal Model Data Available

 

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