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Relevance to Autism

Three patients with atypical Rett syndrome were found to have a de novo 14q12 deletion that included the PRKD1 gene, but not the neighboring FOXG1 gene (Ellaway et al., 2012). Gene expression analysis demonstrated a decrease in both FOXG1 and PRKD1 mRNA expression levels in two of these patients. However, no pathogenic mutations in PRKD1 were identified following screening of an additional 32 patients with atypical Rett syndrome.

Molecular Function

The protein encoded by this gene is a serine/threonine protein kinase involved in many cellular processes, including Golgi body membrane integrity and transport, cell migration and differentiation, MAPK8/JNK1 and Ras pathway signaling, MAPK1/3 (ERK1/2) pathway signaling, cell survival, and regulation of cell shape and adhesion.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
14q12 microdeletions excluding FOXG1 give rise to a congenital variant Rett syndrome-like phenotype.
Rett syndrome
DD, epilepsy
Support
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD
Support
ASD
DD, ID
Support
Integrating de novo and inherited variants in 42
ASD
Support
Large-scale discovery of novel genetic causes of developmental disorders.
Unknown diagnosis

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN457R001 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN457R002 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN457R003 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN457R004 
 missense_variant 
 c.896T>G 
 p.Leu299Arg 
 De novo 
  
 Unknown 
 GEN457R005 
 missense_variant 
 c.1385A>G 
 p.Tyr462Cys 
 De novo 
  
  
 GEN457R006 
 missense_variant 
 c.1321C>T 
 p.Arg441Trp 
 De novo 
  
 Simplex 
 GEN457R007 
 missense_variant 
 c.2219G>A 
 p.Arg740Gln 
 De novo 
  
 Simplex 
 GEN457R008 
 missense_variant 
 c.919A>G 
 p.Asn307Asp 
 De novo 
  
  
 GEN457R009 
 frameshift_variant 
 c.41_71del 
 p.Leu14ProfsTer34 
 De novo 
  
  
 GEN457R010 
 frameshift_variant 
 c.2737_2738insA 
 p.Leu913HisfsTer3 
 Familial 
 Maternal 
 Multiplex 
 GEN457R011 
 stop_gained 
 c.1876C>T 
 p.Arg626Ter 
 Familial 
 Paternal 
 Multiplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
14
Duplication
 1
 
14
Duplication
 4
 
14
Duplication
 1
 
14
Deletion
 2
 
14
Deletion
 1
 
14
Deletion-Duplication
 22
 
14
Deletion
 1
 

No Animal Model Data Available

 

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