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Relevance to Autism

Two de novo variants in the PLPNA7 gene (one loss-of-function, one predicted damaging missense) were identified in ASD probands from the Simons Simplex Collection (ORoak et al., 2012; Iossifov et al., 2014). TADA-Annotations (TADA-A) analysis of whole-genome sequencing data from five studies with a total of 314 ASD-affected subjects in Liu et al., 2018 identified PNPLA7 as an ASD risk gene with a false discovery rate (FDR) < 0.1; among the de novo variants associated with this gene in ASD subjects as a loss-of-function variant, a predicted damaging (Mis3) missense variant, and a splicing SNV.

Molecular Function

Human patatin-like phospholipases, such as PNPLA7, have been implicated in regulation of adipocyte differentiation and have been induced by metabolic stimuli. Serine hydrolase, whose specific chemical modification by certain organophosphorus (OP) compounds leads to distal axonopathy.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations.
ASD
Support
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Mutational Landscape of Autism Spectrum Disorder Brain Tissue
ASD
Recent Recommendation
A Statistical Framework for Mapping Risk Genes from De Novo Mutations in Whole-Genome-Sequencing Studies.
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1015R001 
 missense_variant 
 c.3397A>C 
 p.Ser1133Arg 
 De novo 
  
 Simplex 
 GEN1015R002 
 stop_gained 
 c.3148C>T 
 p.Gln1050Ter 
 De novo 
  
 Simplex 
 GEN1015R003 
 loss_of_function_variant 
  
  
 De novo 
  
  
 GEN1015R004 
 missense_variant 
  
  
 De novo 
  
  
 GEN1015R005 
 splicing_variant 
  
  
 De novo 
  
  
 GEN1015R006 
 synonymous_variant 
 c.3795C>T 
 p.Ala1265%3D 
 Unknown 
  
  
 GEN1015R007 
 stop_gained 
 c.1876C>T 
 p.Arg626Ter 
 De novo 
  
  
 GEN1015R008 
 stop_gained 
 c.1876C>T 
 p.Arg626Ter 
 De novo 
  
 Simplex 
 GEN1015R009 
 synonymous_variant 
 c.1527G>A 
 p.Thr509%3D 
 De novo 
  
 Multiplex 
 GEN1015R010 
 synonymous_variant 
 c.795G>A 
 p.Pro265%3D 
 De novo 
  
 Simplex 
 GEN1015R011 
 frameshift_variant 
 c.2673_2674insCGTG 
 p.Glu892ArgfsTer107 
 Familial 
 Maternal 
 Multiplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
9
Duplication
 1
 
9
Deletion
 1
 
9
Duplication
 1
 
9
Duplication
 2
 
9
Deletion-Duplication
 9
 
9
Deletion-Duplication
 45
 

No Animal Model Data Available

No PIN Data Available
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