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Relevance to Autism

Two de novo missense variants and one de novo frameshift variant in the PAFAH1B2 gene have been observed in ASD probands (Iossifov et al., 2014; Yuen et al., 2017; Du et al., 2019). TADA analysis of 4,504 ASD trios and 3,012 unaffected control/siblings trios from trio-based exome/genome sequencing studies identified PAFAH1B2 as an ASD candidate gene with a q-value < 0.1 (Du et al., 2019).

Molecular Function

Platelet-activating factor acetylhydrolase (PAFAH) inactivates platelet-activating factor (PAF) into acetate and LYSO-PAF. This gene encodes the beta subunit of PAFAH, the other subunits are alpha and gamma.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Whole genome sequencing resource identifies 18 new candidate genes for autism spectrum disorder
ASD
Recent Recommendation
Nonrandom occurrence of multiple de novo coding variants in a proband indicates the existence of an oligogenic model in autism.
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1113R001 
 missense_variant 
 c.395C>G 
 p.Ala132Gly 
 De novo 
  
 Simplex 
 GEN1113R002 
 missense_variant 
 c.53T>C 
 p.Ile18Thr 
 De novo 
  
 Multiplex 
 GEN1113R003 
 frameshift_variant 
 c.390del 
 p.Gln131ArgfsTer20 
 De novo 
  
 Unknown 
 GEN1113R004 
 synonymous_variant 
 c.495T>C 
 p.Tyr165%3D 
 De novo 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
11
Duplication
 1
 
11
Duplication
 1
 
11
Duplication
 2
 
11
Deletion-Duplication
 19
 
11
Deletion
 9
 

No Animal Model Data Available

 

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