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Relevance to Autism

De novo deletions encompassing the NR4A2 gene were identified in three unrelated individuals with developmental delay/intellectual disability and language delay/impairment, two of whom also met DSM-5 criteria for a diagnosis of ASD, in Levy et al., 2018; in contrast, no CNVs encompassing this gene were reported in the Database of Genomic Variants (DGV). De novo deletions affecting this gene had previously been identified in individuals with intellectual disability and language delay/impairment (one of whom was also diagnosed with ASD) in three separate reports (Barge-Schaapveld et al., 2013; Leppa et al., 2016; Reuter et al., 2017). A de novo damaging missense variant in the NR4A2 gene was observed in an ASD proband from the Simons Simplex Collection (O'Roak et al., 2012).

Molecular Function

This gene encodes a member of the steroid-thyroid hormone-retinoid receptor superfamily. The encoded protein may act as a transcription factor. Mutations in this gene have been associated with disorders related to dopaminergic dysfunction, including Parkinson disease, schizophernia, and manic depression.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
NR4A2 haploinsufficiency is associated with intellectual disability and autism spectrum disorder.
ASD, DD, ID
Support
Haploinsufficiency of NR4A2 is associated with a neurodevelopmental phenotype with prominent language impairment.
ID
Support
Rare Inherited and De Novo CNVs Reveal Complex Contributions to ASD Risk in Multiplex Families.
ASD, ID
Support
Intellectual disability and hemizygous GPD2 mutation.
ID
Support
Integrating de novo and inherited variants in 42
ASD
Support
Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations.
ASD
Support
Impaired Neurodevelopmental Genes in Slovenian Autistic Children Elucidate the Comorbidity of Autism With Other Developmental Disorders
ASD
ID
Support
Exome sequencing of 457 autism families recruited online provides evidence for autism risk genes
ASD
Support
Genome sequencing identifies multiple deleterious variants in autism patients with more severe phenotypes.
ASD
Recent Recommendation
De novo variants of NR4A2 are associated with neurodevelopmental disorder and epilepsy
DD, ID, epilepsy/seizures
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1016R001 
 copy_number_loss 
  
  
 De novo 
  
 Simplex 
 GEN1016R002 
 copy_number_loss 
  
  
 De novo 
  
 Simplex 
 GEN1016R003 
 copy_number_loss 
  
  
 De novo 
  
 Simplex 
 GEN1016R004 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN1016R005 
 copy_number_loss 
  
  
 De novo 
  
 Simplex 
 GEN1016R006 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN1016R007 
 missense_variant 
 c.823T>C 
 p.Tyr275His 
 De novo 
  
 Simplex 
 GEN1016R008 
 frameshift_variant 
 c.354_355insGTCC 
 p.Ser119ValfsTer62 
 De novo 
  
 Simplex 
 GEN1016R009 
 frameshift_variant 
 c.693del 
 p.Phe232SerfsTer69 
 De novo 
  
  
 GEN1016R010 
 missense_variant 
 c.839G>A 
 p.Cys280Tyr 
 De novo 
  
  
 GEN1016R011 
 splice_site_variant 
 c.865-1_865delinsAAAAAGGAGT 
  
 De novo 
  
  
 GEN1016R012 
 missense_variant 
 c.914G>A 
 p.Cys305Tyr 
 De novo 
  
 Simplex 
 GEN1016R013 
 missense_variant 
 c.1175A>G 
 p.Asp392Gly 
 De novo 
  
  
 GEN1016R014 
 stop_gained 
 c.1576G>T 
 p.Glu526Ter 
 Unknown 
 Not maternal 
  
 GEN1016R015 
 frameshift_variant 
 c.325dup 
 p.Gln109ProfsTer3 
 De novo 
  
  
 GEN1016R016 
 missense_variant 
 c.857T>C 
 p.Phe286Ser 
 De novo 
  
  
 GEN1016R017 
 missense_variant 
 c.968G>T 
 p.Cys323Phe 
 De novo 
  
 Simplex 
 GEN1016R018 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN1016R019 
 stop_gained 
 c.571C>T 
 p.Gln191Ter 
 De novo 
  
  
 GEN1016R020 
 frameshift_variant 
 c.598_599insGTCC 
 p.Val200GlyfsTer83 
 De novo 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
2
Duplication
 1
 
2
Duplication
 1
 
2
Duplication
 1
 
2
Duplication
 1
 
2
Deletion
 1
 
2
Deletion
 1
 
2
Deletion
 5
 
2
Deletion
 1
 
2
Deletion-Duplication
 16
 
2
Deletion-Duplication
 7
 
2
Deletion
 3
 

No Animal Model Data Available

 

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