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Relevance to Autism

Li et al., 2023 determined that a de novo coding-synonymous variant in the NPTN gene originally identified in an ASD proband from the Autism Sequencing Consortium in Satterstrom et al., 2020 was a non-canonical splicing variant; subsequent functional analysis by minigene splicing assays demonstrated that this variant resulted in loss of 180 base pairs from exon 6 of this gene. De novo missense variants have also been identified in two ASD probands from the SPARK cohort (Trost et al., 2022).

Molecular Function

This gene encodes a type I transmembrane protein belonging to the Ig superfamily. The protein is believed to be involved in cell-cell interactions or cell-substrate interactions.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
ASD
Support
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD
Support
Genomic architecture of autism from comprehensive whole-genome sequence annotation
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1431R001 
 synonymous_variant 
 c.936C>T 
 p.Gly312= 
 De novo 
  
  
 GEN1431R002 
 missense_variant 
 c.1114G>A 
 p.Asp372Asn 
 De novo 
  
  
 GEN1431R003 
 missense_variant 
 c.139G>C 
 p.Ala47Pro 
 De novo 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
15
Duplication
 81
  construct
15
Duplication
 1
 
15
Deletion-Duplication
 13
 
15
Deletion
 9
 
15
Deletion
 3
 
15
Deletion
 1
 
15
Duplication
 2
 
15
Deletion-Duplication
 13
 
15
Deletion
 12
 

No Animal Model Data Available

 

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