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Relevance to Autism

To evaluate the effects of ASD-associated de novo variants in a family relative context, Kim et al., 2025 defined within-family standardized deviations (WFSD) by subtracting phenotype scores of unaffected family members and standardizing the result in 21,735 families from three ASD cohorts (the Korean Autism cohort, the Simons Simplex Collection, and SPARK); their analysis found that more genes enriched in de novo damaging protein-truncating variants (LOEUF < 0.37) and missense variants (MPC > 2) were identified using WFSD compared to raw phenotype scores, with 38 genes uniquely identified in the WFSD group, including the NMT1 gene. De novo loss-of-function variants in NMT1 have been reported in ASD probands from the Simons Simplex Collection and the MSSNG cohort, and a de novo missense variant in this gene was reported in an ASD proband from the Autism Sequencing Consortium (Iossifov et al., 2014; Satterstrom et al., 2020; Trost et al., 2022).

Molecular Function

Myristate, a rare 14-carbon saturated fatty acid, is cotranslationally attached by an amide linkage to the N-terminal glycine residue of cellular and viral proteins with diverse functions. N-myristoyltransferase (NMT; EC 2.3.1.97) catalyzes the transfer of myristate from CoA to proteins. N-myristoylation appears to be irreversible and is required for full expression of the biologic activities of several N-myristoylated proteins, including the alpha subunit of the signal-transducing guanine nucleotide-binding protein (G protein) GO (GNAO1; MIM 139311)

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References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Evaluation of familial phenotype deviation to measure the impact of de novo mutations in autism
ASD
Support
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Genomic architecture of autism from comprehensive whole-genome sequence annotation
ASD
Support
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1516R001 
 frameshift_variant 
 c.613_625del 
 p.Gly205SerfsTer35 
 De novo 
  
 Simplex 
 GEN1516R002 
 missense_variant 
 c.1096A>C 
 p.Met366Leu 
 De novo 
  
  
 GEN1516R003 
 splice_site_variant 
 c.131+1G>A 
 p.? 
 De novo 
  
 Multiplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
17
Duplication
 1
 
17
Duplication
 1
 
17
Duplication
 1
 
17
Duplication
 52
 
17
Duplication
 1
 

No Animal Model Data Available

 

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