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Relevance to Autism

A de novo loss-of-function variant in the NFIB gene was identified in an ASD proband from the Simons Simplex Collection (Iossifov et al., 2014). Schanze et al., 2018 reported 18 individuals haploinsufficent for the NFIB gene (10 individuals with microdeletions affecting NFIB, five individuals with truncating variants, and three individuals with missense variants that resulted in significantly reduced transcriptional activity) that presented with mild intellectual disability or learning disability, speech delay, and macrocephaly; behavioral abnormalities were frequently observed in this cohort, with five cases presenting with ASD or autistic features. NFIB was found to bind to a transcriptional activator containing an ASD-associated intronic haplotype in the EN2 gene (Choi et al., 2012).

Molecular Function

Recognizes and binds the palindromic sequence 5'-TTGGCNNNNNGCCAA-3' present in viral and cellular promoters and in the origin of replication of adenovirus type 2. These proteins are individually capable of activating transcription and replication.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Cut-like homeobox 1 and nuclear factor I/B mediate ENGRAILED2 autism spectrum disorder-associated haplotype function.
Support
ID
Support
ASD, DD, ID
Support
Exome sequencing of 457 autism families recruited online provides evidence for autism risk genes
ASD
Recent Recommendation
Chromatin Decondensation by FOXP2 Promotes Human Neuron Maturation and Expression of Neurodevelopmental Disease Genes.
Recent Recommendation
NFIB Haploinsufficiency Is Associated with Intellectual Disability and Macrocephaly.
DD, ID, macrocephaly
ASD or autistic features

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1047R001 
 splice_site_variant 
 c.806+1G>A 
  
 De novo 
  
 Simplex 
 GEN1047R002 
 stop_gained 
 c.109C>T 
 p.Arg37Ter 
 De novo 
  
 Simplex 
 GEN1047R003 
 stop_gained 
 c.265C>T 
 p.Arg89Ter 
 Unknown 
  
 Simplex 
 GEN1047R004 
 missense_variant 
 c.341A>C 
 p.Lys114Thr 
 Unknown 
  
  
 GEN1047R005 
 missense_variant 
 c.376A>G 
 p.Lys126Glu 
 De novo 
  
  
 GEN1047R006 
 missense_variant 
 c.395T>C 
 p.Leu132Pro 
 De novo 
  
  
 GEN1047R007 
 frameshift_variant 
 c.758_759insTG 
 p.Met253IlefsTer26 
 Familial 
 Maternal 
 Simplex 
 GEN1047R008 
 frameshift_variant 
 c.1063_1076del 
 p.Ile355SerfsTer48 
 De novo 
  
  
 GEN1047R009 
 copy_number_loss 
  
  
 Familial 
  
 Multiplex 
 GEN1047R010 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN1047R011 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Simplex 
 GEN1047R012 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN1047R013 
 copy_number_loss 
  
  
 Unknown 
  
  
 GEN1047R014 
 copy_number_loss 
  
  
 De novo 
  
 Simplex 
 GEN1047R015 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN1047R016 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN1047R017 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN1047R018 
 missense_variant 
 c.115C>T 
 p.Arg39Cys 
 Familial 
 Maternal 
 Simplex 
 GEN1047R019 
 stop_gained 
 c.662C>G 
 p.Ser221Ter 
 Familial 
 Paternal 
  
  et al.  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
9
Deletion-Duplication
 11
 
9
N/A
 1
 
9
Duplication
 1
 
9
Duplication
 1
 
9
Duplication
 1
 
9
Deletion
 3
 
9
Deletion
 4
 
9
Duplication
 7
 
9
Duplication
 3
 
9
Duplication
 2
 
9
Duplication
 4
 
9
Deletion
 3
 
9
N/A
 5
 
9
Duplication
 3
 
9
Duplication
 1
 

No Animal Model Data Available

 

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