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Relevance to Autism

Two intronic SNPS within the NAALADL2 gene showed association with ASD in a case-control analysis in the Taiwanese Han population (Kuo et al., 2015).

Molecular Function

This gene encodes a single-pass type II membrane protein that may be catalytically inactive.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Genome-Wide Association Study for Autism Spectrum Disorder in Taiwanese Han Population.
ASD
Support
Phenotype-to-genotype approach reveals head-circumference-associated genes in an autism spectrum disorder cohort.
ASD
Macrocephaly
Support
Optical genome mapping unveils hidden structural variants in neurodevelopmental disorders
DD, ID
Support
Integrating de novo and inherited variants in 42
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN777R001 
 stop_gained 
 c.1465C>T 
 p.Arg489Ter 
 Familial 
 Maternal 
 Simplex 
 GEN777R002 
 missense_variant 
 c.1159G>A 
 p.Val387Ile 
 De novo 
  
  
 GEN777R003 
 missense_variant 
 c.1808G>A 
 p.Ser603Asn 
 De novo 
  
  
 GEN777R004 
 stop_gained 
 c.334C>T 
 p.Arg112Ter 
 Familial 
 Paternal 
 Multiplex 
 GEN777R005 
 inversion 
  
  
 De novo 
  
 Simplex 

Common

Variant ID
Polymorphism
SNP ID
Allele Change
Residue Change
Population Origin
Population Stage
Author, Year
 GEN777C001 
 intron_variant 
 rs3914502 
 c.-9+109066T>A;c.-9+109066T>G 
  
 315 ASD cases, 1115 healthy controls (Taiwanese Han) 
 Discovery 
 GEN777C002 
 intron_variant, 2KB_upstream_variant 
 rs2222447 
 c.43+3586T>G;c.-9+125290T>G;c.-1033T>G 
  
 315 ASD cases, 1115 healthy controls (Taiwanese Han) 
 Discovery 
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
3
Duplication
 1
 
3
Duplication
 1
 
3
Duplication
 3
 
3
Duplication
 2
 
3
Duplication
 1
 
3
Duplication
 1
 
3
Duplication
 3
 
3
Deletion-Duplication
 21
 
3
Deletion
 3
 
3
Duplication
 1
 

No Animal Model Data Available

 

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