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Relevance to Autism

Two de novo missense variants in the MYO5A gene had previously been identified in ASD probands (one proband from the Autism Sequencing Consortium in De Rubeis et al., 2014, the other from the Simons Simplex Collection in Iossifov et al., 2014). Two additional de novo missense variants in this gene were identified by whole genome sequencing in two ASD probands as part of the MSSNG initiative in Yuen et al., 2017. Based on the discovery of four de novo missense variants in ASD cases, a z-score > 2.0 for missense mutations, and a higher-than expected mutation rate (a false discovery rate < 15%), MYO5A was determined to be an ASD candidate gene in Yuen et al., 2017.

Molecular Function

This gene is one of three myosin V heavy-chain genes, belonging to the myosin gene superfamily. Myosin V is a class of actin-based motor proteins involved in cytoplasmic vesicle transport and anchorage, spindle-pole alignment and mRNA translocation.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD
Positive Association
Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with ...
ASD
Support
ASD
ADHD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Inherited and De Novo Genetic Risk for Autism Impacts Shared Networks.
ASD
Support
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Recent Recommendation
Whole genome sequencing resource identifies 18 new candidate genes for autism spectrum disorder
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN892R001 
 missense_variant 
 c.368T>G 
 p.Ile123Ser 
 De novo 
  
  
 GEN892R002 
 missense_variant 
 c.1958C>G 
 p.Thr653Ser 
 De novo 
  
 Simplex 
 GEN892R003 
 missense_variant 
 c.1961C>A 
 p.Thr654Asn 
 De novo 
  
 Multiplex 
 GEN892R004 
 missense_variant 
 c.4010C>T 
 p.Ala1337Val 
 De novo 
  
 Multiplex 
 GEN892R005 
 missense_variant 
 c.4919G>T 
 p.Gly1640Val 
 De novo 
  
 Multiplex 
 GEN892R006 
 missense_variant 
 c.1331T>A 
 p.Phe444Tyr 
 De novo 
  
 Multiplex 
 GEN892R007 
 missense_variant 
 c.5523T>G 
 p.Phe1841Leu 
 De novo 
  
  
 GEN892R008 
 missense_variant 
 c.5234A>G 
 p.Glu1745Gly 
 De novo 
  
  
 GEN892R009 
 inframe_insertion 
 c.4002_4003insGCTGTGGCTGGTTTATGAAGG 
 p.Glu1334_Leu1335insAlaValAlaGlyLeuTer 
 De novo 
  
  
 GEN892R010 
 stop_gained 
 c.3614C>A 
 p.Ser1205Ter 
 De novo 
  
  
 GEN892R011 
 synonymous_variant 
 c.3768C>T 
 p.Ser1256%3D 
 De novo 
  
 Simplex 
 GEN892R012 
 missense_variant 
 c.2398G>A 
 p.Val800Met 
 De novo 
  
 Multiplex 
 GEN892R013 
 missense_variant 
 c.1177A>G 
 p.Lys393Glu 
 De novo 
  
 Multiplex 
 GEN892R014 
 missense_variant 
 c.1826G>A 
 p.Arg609His 
 De novo 
  
 Simplex 
  et al.  

Common

Variant ID
Polymorphism
SNP ID
Allele Change
Residue Change
Population Origin
Population Stage
Author, Year
 GEN892C001 
 allele 
 chr15_52811815_D 
  
  
 7387 ASD cases and 8567 controls from Autism Center of Excellence Network (ACE), Autism Genetic Resource Exchange (AGRE), Autism Genome Project (AGP), Finnish Case-Control ASD Collection, NIMH Repository and Montreal/Boston (MonBos) Collection, Population-Based Autism Genetics and Environment Study (PAGES), Simons Simplex Collection (SSC), and Weiss Laboratory Autism Collection 
 Discovery 
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
15
Duplication
 81
  construct
15
Deletion
 2
 
15
Deletion
 1
 
15
Duplication
 1
 

Model Summary

The Flailer mouse was identified as a mouse model that carries a spontaneous non-homologous recombination event that results in an extra gene, named Flailer, composed by the fusion of the promoter and exons 1-2 of the Gnb5 gene fused together by a mixed intron, to exons 26-40 of the Myo5a gene. When the Flailer protein is present in a 1:1 ratio with wildtype MyosinVa it works as a dominant negative, leading to a reduced transport and abnormal synaptic clustering of receptors and scaffolding proteins such as PSD95 and AMPA receptors. In the Flailer mouse, hippocampal long-term depression is absent. The Flailer mouse also exhibits various behavioral phenotypes: increased repetitive grooming, increased anxiety, decreased contextual fear conditioning memory, and increased spontaneous seizures. A CRISPR-Cas9 construct targeted to Flailer in the hippocampus, reduced the expression of Flailer protein and mRNA, when injected at about 3 weeks. This construct rescues some phenotypes, including LTD, anxiety, and contextual fear conditioning memory, but does not rescue the repetitive grooming phenotype. When the same construct is injected at P0 in the cerebral ventricles, it also reduces the expression of Flailer protein and mRNA, and rescues repetitive grooming behavior, in addition to anxiety, contextual fear conditioning memory and seizures.

References

Type
Title
Author, Year
Primary
NA

M_MYO5A_1_SP_HM

Model Type: Genetic
Model Genotype: Homozygous
Mutation: The Flailer mouse was identified as a mouse model that carries a spontaneous non-homologous recombination event that resulted in an extra gene, named Flailer. The Flailer gene (MGI:1858520) is composed of the first two exons of Gnb5 fused in a frame with a mixed intron (Gnb5/Myo5a) and exons 26-40 of Myo5a. Since the Flailer mutation is a partial duplication, every cell also contains the endogenous copies of Gnb5 and Myo5a. The expression of the Flailer fusion protein is controlled by the Gnb5 gene promoter, which is highly and broadly expressed in the central nervous system. The resulting protein, Flailer, binds to cargo but lacks the actin-binding domain of MyosinVa, which is necessary for binding and walking to the plus end of actin filaments. When the Flailer protein is present in a 1:1 ratio with wild-type MyosinVa (homozygous) it works as a dominant negative, leading to a reduced transport and abnormal synaptic clustering of receptors and scaffolding proteins.
Allele Type: Dominant negative
Strain of Origin: C57BL/10J
Genetic Background: B6 x B6CBCa Aw-J
ES Cell Line: NA
Mutant ES Cell Line:
Model Source: Jackson Laboratory

M_MYO5A_1_SP_HM

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Synaptic plasticity: hippocampal LTD1
Decreased
Description: Long-term depression by paired-pulse low-frequency stimulation is absent in the hippocampus of the Flailer mouse, while slices from wildtype mice exhibit robust LTD induction.
 Paired-pulse low-frequency stimulation (PP-LFS)
 P20
Self grooming1
Increased
Description: Flailer animals spend approximately 30 to 35% of their time engaged in grooming, a significantly higher percentage than wildtype animals.
 Grooming behavior assessments
 8 weeks
Seizures1
Increased
Description: Flailer animals manifested seizures for roughly 25% of the analyzed time span.
 Observation of seizures
 P20-P25
Anxiety1
Increased
Description: Flailer mice show increased anxiety behavior in light-dark exploration test, measured by three parameters: increased latency to enter bright field, decreased number of crosses to light and decreased time spent in the bright field.
 Light-dark exploration test
 8 weeks
Anxiety1
Increased
Description: Flailer mice spend less time in open arms compared to wildtype mice, which is an indication of anxiety.
 Elevated plus maze test
 8 weeks
Cued or contextual fear conditioning: memory of context1
Decreased
Description: Flailer animals do not demonstrate strong memory formation, as measured by reduced freezing times in response to fear-associated context, compared to wildtype animals.
 Fear conditioning test
 8 weeks
Targeted expression1
Increased
Description: Flailer protein is present in ventral hippocampal tissue of the Flailer mouse.
 Western blot
 8 weeks
Targeted expression1
Increased
Description: Flailer mRNA is present in ventral hippocampal tissue of the Flailer mouse.
 Quantitative PCR (qRT-PCR)
 8 weeks
Response to novelty1
 No change
 Fear conditioning test
 8 weeks
 Not Reported:

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