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Relevance to Autism

A de novo loss-of-function (LoF) variant in the MED13 gene was first identified in an ASD proband from the Simons Simplex Collection (Iossifov et al., 2014). A second de novo LoF variant in this gene was identified by whole genome sequencing in an ASD proband from a simplex family as part of the MSSNG initiative in Yuen et al., 2017. Based on the discovery of two de novo LoF variants in ASD cases, a probability of LoF intolerance rate (pLI) > 0.9, and a higher-than expected mutation rate (a false discovery rate < 15%), MED13 was determined to be an ASD candidate gene in Yuen et al., 2017. Genetic and phenotypic characterization of a cohort of 13 individuals affected with intellectual disability or developmental delay and harboring protein-altering variants in the MED13 gene in Snijders Blok et al., 2018 demonstrated that five of these cases also had autism spectrum disorder (ASD), while three cases were also diagnosed with ADHD. Additional de novo loss-of-function variants in the MED13 gene were reported in ASD probands from the Autism Sequencing Consortium, the MSSNG cohort, and the SPARK cohort in Zhou et al., 2022; a two-stage analysis of rare de novo and inherited coding variants in 42,607 ASD cases, including 35,130 new cases from the SPARK cohort, in this report identified MED13 as a gene reaching exome-wide significance (P < 2.5E-06).

Molecular Function

The MED13 gene encodes a component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Genomic diagnosis for children with intellectual disability and/or developmental delay.
ID, ADHD, pervasive developmental disorder (PDD)
Support
ASD
DD, ID
Support
ADHD, DD, ID
Support
Complex Diagnostics of Non-Specific Intellectual Developmental Disorder
DD, ID
Support
ASD, DD
Support
Trio-based exome sequencing reveals a high rate of the de novo variants in intellectual disability
ID
Support
Developmental language disorder
Support
Mutational Landscape of Autism Spectrum Disorder Brain Tissue
ASD
Support
ASD
Recent Recommendation
Integrating de novo and inherited variants in 42
ASD
Recent Recommendation
De novo mutations in MED13, a component of the Mediator complex, are associated with a novel neurodevelopmental disorder.
DD, ID
ASD, ADHD
Recent Recommendation
Whole genome sequencing resource identifies 18 new candidate genes for autism spectrum disorder
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN884R001 
 frameshift_variant 
 c.857del 
 p.Pro286LeufsTer86 
 De novo 
  
 Simplex 
 GEN884R002 
 inframe_deletion 
 g.60060310:AGGAGTCCTT>A 
 -1018 
 De novo 
  
 Simplex 
 GEN884R003 
 stop_gained 
 G>A 
 p.Arg512Ter 
 De novo 
  
 Simplex 
 GEN884R004 
 missense_variant 
 c.1252G>A 
 p.Ala418Thr 
 De novo 
  
 Simplex 
 GEN884R005 
 stop_gained 
 c.4947C>G 
 p.Tyr1649Ter 
 Unknown 
  
 Simplex 
 GEN884R006 
 stop_gained 
 c.4198C>T 
 p.Arg1400Ter 
 De novo 
  
  
 GEN884R007 
 frameshift_variant 
 c.125del 
 p.Pro42LeufsTer6 
 De novo 
  
  
 GEN884R008 
 stop_gained 
 c.392T>G 
 p.Leu131Ter 
 Familial 
 Maternal 
 Simplex 
 GEN884R009 
 missense_variant 
 c.977C>T 
 p.Thr326Ile 
 De novo 
  
  
 GEN884R010 
 inframe_deletion 
 c.975_977del 
 p.Thr326del 
 De novo 
  
  
 GEN884R011 
 missense_variant 
 c.979C>T 
 p.Pro327Ser 
 De novo 
  
  
 GEN884R012 
 missense_variant 
 c.980C>A 
 p.Pro327Gln 
 De novo 
  
  
 GEN884R013 
 missense_variant 
 c.1618C>A 
 p.Pro540Thr 
 De novo 
  
  
 GEN884R014 
 stop_gained 
 c.1745T>A 
 p.Leu582Ter 
 De novo 
  
  
 GEN884R015 
 frameshift_variant 
 c.4487del 
 p.Thr1496MetfsTer11 
 De novo 
  
  
 GEN884R016 
 missense_variant 
 c.6337C>A 
 p.Leu2113Ile 
 De novo 
  
  
 GEN884R017 
 missense_variant 
 c.6191C>T 
 p.Ala2064Val 
 De novo 
  
  
 GEN884R018 
 missense_variant 
 c.4402C>T 
 p.Pro1468Ser 
 Unknown 
  
  
 GEN884R019 
 missense_variant 
 c.2812A>G 
 p.Ile938Val 
 Unknown 
  
  
 GEN884R020 
 missense_variant 
 c.977C>T 
 p.Thr326Ile 
 De novo 
  
  
 GEN884R021 
 missense_variant 
 c.977C>T 
 p.Thr326Ile 
 Unknown 
  
 Unknown 
 GEN884R022 
 stop_gained 
 c.1534C>T 
 p.Arg512Ter 
 De novo 
  
  
 GEN884R023 
 synonymous_variant 
 c.2571T>C 
 p.Tyr857%3D 
 De novo 
  
 Multiplex 
 GEN884R024 
 missense_variant 
 c.1792G>T 
 p.Val598Leu 
 De novo 
  
 Multiplex 
 GEN884R025 
 stop_gained 
 c.1534C>T 
 p.Arg512Ter 
 De novo 
  
 Simplex 
 GEN884R026 
 stop_gained 
 c.5272C>T 
 p.Arg1758Ter 
 De novo 
  
  
 GEN884R027 
 stop_gained 
 c.5272C>T 
 p.Arg1758Ter 
 De novo 
  
  
 GEN884R028 
 synonymous_variant 
 c.5100G>A 
 p.Lys1700%3D 
 De novo 
  
  
 GEN884R029 
 frameshift_variant 
 c.4584dup 
 p.Ala1529SerfsTer2 
 De novo 
  
  
 GEN884R030 
 missense_variant 
 c.992C>G 
 p.Pro331Arg 
 De novo 
  
  
 GEN884R031 
 frameshift_variant 
 c.908_909insG 
 p.Ser304PhefsTer29 
 De novo 
  
  
 GEN884R032 
 splice_region_variant 
 c.814+3A>G 
  
 De novo 
  
  
 GEN884R033 
 frameshift_variant 
 c.2593_2594delinsC 
 p.Gly865GlnfsTer5 
 De novo 
  
  
 GEN884R034 
 stop_gained 
 c.4802C>A 
 p.Ser1601Ter 
 Familial 
 Maternal 
 Simplex 
 GEN884R035 
 missense_variant 
 c.5732G>T 
 p.Ser1911Ile 
 Unknown 
  
 Simplex 
 GEN884R036 
 missense_variant 
 c.5839T>G 
 p.Ser1947Ala 
 Unknown 
  
 Simplex 
 GEN884R037 
 missense_variant 
 c.124C>T 
 p.Pro42Ser 
 Unknown 
  
  
  et al.  
 GEN884R038 
 stop_gained 
 c.4225C>T 
 p.Arg1409Ter 
 De novo 
  
 Simplex 
  et al.  
 GEN884R039 
 missense_variant 
 c.697A>G 
 p.Ile233Val 
 Unknown 
  
  
  et al.  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
17
Duplication
 1
 
17
Duplication
 1
 
17
Duplication
 1
 
17
Deletion
 1
 
17
Deletion
 8
 
17
Duplication
 1
 
17
Duplication
 1
 

No Animal Model Data Available

No PIN Data Available
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