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Relevance to Autism

Multiple de novo variants in the MACF1 gene, including several missense variants, have been identified in ASD probands (Iossifov et al., 2014; Yuen et al., 2017; Satterstrom et al., 2020; Zhou et al., 2022), while inherited missense variants in this gene were identified in at least two diagnosed autistic individuals and absent in all non-autistic individuals in two separate multiplex ASD families in More et al., 2023. Heterozygous mutations in MACF1 are responsible for lissencephaly-9 with complex brainstem malformation (LIS9; OMIM 618325), an autosomal dominant neurologic disorder characterized by global developmental delay apparent since infancy, impaired intellectual development with poor or absent speech, and sometimes abnormal or involuntary movements associated with abnormal brain imaging that typically shows pachygyria, lissencephaly, and malformation of the brainstem consistent with a neuronal migration defect (Dobyns et al., 2018); two of the eight individuals with this disorder in this report presented with hand stereotypies. Macf1-mutant mice have been shown to exhibit social deficits and aberrant emotional behaviors (Ka et al., 2022).

Molecular Function

This gene encodes a large protein containing numerous spectrin and leucine-rich repeat (LRR) domains. The encoded protein is a member of a family of proteins that form bridges between different cytoskeletal elements. This protein facilitates actin-microtubule interactions at the cell periphery and couples the microtubule network to cellular junctions. Deletion of Macf1 in the mouse cerebral cortex during cortical development results in double cortex/subcortical band heterotopia and disrupted cortical lamination (Ka et al., 2022).

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Lissencephaly-9 with complex brainstem malformatio
Stereotypy
Support
Integrative Analyses of De Novo Mutations Provide Deeper Biological Insights into Autism Spectrum Disorder.
ASD
Support
Whole genome sequencing resource identifies 18 new candidate genes for autism spectrum disorder
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Lissencephaly-9 with complex brainstem malformatio
Social deficits
Support
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD
Support
Both rare and common genetic variants contribute to autism in the Faroe Islands.
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1390R001 
 missense_variant 
 c.6991A>G 
 p.Met2331Val 
 De novo 
  
 Simplex 
 GEN1390R002 
 synonymous_variant 
 c.427C>T 
 p.Leu143= 
 De novo 
  
 Simplex 
 GEN1390R003 
 missense_variant 
 c.18004G>A 
 p.Glu6002Lys 
 Unknown 
  
 Simplex 
 GEN1390R004 
 stop_gained 
 c.10801C>T 
 p.Arg3601Ter 
 Unknown 
  
 Simplex 
 GEN1390R005 
 synonymous_variant 
 c.12480T>C 
 p.Ile4160= 
 De novo 
  
  
 GEN1390R006 
 intron_variant 
 c.4629+6036_4629+6037dup 
  
 De novo 
  
 Simplex 
 GEN1390R007 
 intron_variant 
 c.4629+3858A>G 
  
 De novo 
  
  
 GEN1390R008 
 intron_variant 
 c.4629+8163_4629+8164del 
  
 De novo 
  
  
 GEN1390R009 
 missense_variant 
 c.7366A>G 
 p.Lys2456Glu 
 De novo 
  
  
 GEN1390R010 
 missense_variant 
 c.11308A>G 
 p.Met3770Val 
 De novo 
  
  
 GEN1390R011 
 missense_variant 
 c.11584_11585delinsAT 
 p.Gln3862Ile 
 De novo 
  
  
 GEN1390R012 
 missense_variant 
 c.8941G>T 
 p.Ala2981Ser 
 Familial 
  
 Multiplex 
 GEN1390R013 
 missense_variant 
 c.2444G>T 
 p.Cys815Phe 
 Familial 
  
 Multiplex 
 GEN1390R014 
 missense_variant 
 c.15530G>T 
 p.Cys5177Phe 
 De novo 
  
  
 GEN1390R015 
 missense_variant 
 c.15530G>T 
 p.Cys5177Phe 
 De novo 
  
  
 GEN1390R016 
 missense_variant 
 c.15682G>T 
 p.Asp5228Tyr 
 De novo 
  
  
 GEN1390R017 
 missense_variant 
 c.15682G>T 
 p.Asp5228Tyr 
 De novo 
  
  
 GEN1390R018 
 missense_variant 
 c.15689G>T 
 p.Cys5230Phe 
 De novo 
  
 Multiplex (monozygotic twins) 
 GEN1390R019 
 missense_variant 
 c.15688T>G 
 p.Cys5230Gly 
 De novo 
  
  
 GEN1390R020 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN1390R021 
 missense_variant 
 c.14116G>C 
 p.Gly4706Arg 
 De novo 
  
  
 GEN1390R022 
 frameshift_variant 
 c.14386del 
 p.Gln4796SerfsTer10 
 De novo 
  
 Simplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
1
Duplication
 1
 
1
Deletion-Duplication
 11
 
1
Duplication
 1
 
1
Deletion
 3
 

No Animal Model Data Available

 

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