Summary Statistics:
ASD Reports: 20
Recent Reports: 1
Annotated variants: 69
Associated CNVs: 7
Evidence score: 4
Gene Score: 4
Relevance to Autism
Cluster-detection analysis of an ASD-associated chromosome 2q linkage region that had been sequenced in three independent datasets revealed variants in the LRP2 gene that were associated with ASD in two of the datasets (the combined variable-threshold-test p value is 1.2 10(-5)). (Ionita-Laza et al., 2012). A de novo nonsense variant in the LRP2 gene was identified in an autistic proband following exome sequencing of 343 quad families from the Simons Simplex Collection (Iossifov et al., 2012).
Molecular Function
The protein encoded by this gene, low density lipoprotein-related protein 2 (LRP2) or megalin, is a multi-ligand endocytic receptor that is expressed in many different tissues but primarily in absorptive epithilial tissues such as the kidney. This glycoprotein has a large amino-terminal extracellular domain, a single transmembrane domain, and a short carboxy-terminal cytoplasmic tail. The extracellular ligand-binding-domains bind diverse macromolecules including albumin, apolipoproteins B and E, and lipoprotein lipase. The LRP2 protein is critical for the reuptake of numerous ligands, including lipoproteins, sterols, vitamin-binding proteins, and hormones. This protein also has a role in cell-signaling; extracellular ligands include parathyroid horomones and the morphogen sonic hedgehog while cytosolic ligands include MAP kinase scaffold proteins and JNK interacting proteins. Recycling of this membrane receptor is regulated by phosphorylation of its cytoplasmic domain.
References
Primary
Scan-statistic approach identifies clusters of rare disease variants in LRP2, a gene linked and associated with autism spectrum disorders, in three...
ASD
Positive Association
Genome-Wide Association Study for Autism Spectrum Disorder in Taiwanese Han Population.
ASD
Support
Leveraging blood serotonin as an endophenotype to identify de novo and rare variants involved in autism.
ASD
Support
Mutational Landscape of Autism Spectrum Disorder Brain Tissue
ASD
Support
Excess of rare, inherited truncating mutations in autism.
ASD
Support
Prevalence and phenotypic impact of rare potentially damaging variants in autism spectrum disorder
ASD
Support
Large-scale discovery of novel genetic causes of developmental disorders.
ID, epilepsy/seizures
Microcephaly, hearing impairment
Support
High prevalence of multilocus pathogenic variation in neurodevelopmental disorders in the Turkish population
DD
Support
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD
Support
Next-Generation Sequencing in Korean Children With Autism Spectrum Disorder and Comorbid Epilepsy
ASD
ID, epilepsy/seizures
Support
Donnai-Barrow syndrome, DD
Autistic features, stereotypy, epilepsy/seizures
Support
Diagnostic exome sequencing in persons with severe intellectual disability.
ID
Epilepsy, ASD
Support
Exome sequencing of 457 autism families recruited online provides evidence for autism risk genes
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
De novo gene disruptions in children on the autistic spectrum.
ASD
Support
Mapping autosomal recessive intellectual disability: combined microarray and exome sequencing identifies 26 novel candidate genes in 192 consanguin...
ID
Support
Clinical Targeted Panel Sequencing Analysis in Clinical Evaluation of Children with Autism Spectrum Disorder in China
ASD
Highly Cited
Mutations in LRP2, which encodes the multiligand receptor megalin, cause Donnai-Barrow and facio-oculo-acoustico-renal syndromes.
Recent Recommendation
Integrated systems analysis reveals a molecular network underlying autism spectrum disorders.
ASD
GEN362R001
stop_gained
c.9550C>T
p.Arg3184Ter
De novo
Simplex
GEN362R002
synonymous_variant
p.(=)
Unknown
GEN362R003
missense_variant
NM_004525:c.6256G>C
p.Thr2086Ser
Unknown
GEN362R004
missense_variant
c.6160G>A
p.Asp2054Asn
Unknown
GEN362R005
missense_variant
c.6049G>A
p.Glu2017Lys
Unknown
GEN362R006
synonymous_variant
p.(=)
Unknown
GEN362R007
missense_variant
c.5932G>C
p.Glu1978Gln
Unknown
GEN362R008
missense_variant
c.5842G>A
p.Val1948Met
Unknown
GEN362R009
missense_variant
c.5792A>G
p.Gln1931Arg
Unknown
GEN362R010
missense_variant
c.4979G>A
p.Arg1660His
Unknown
GEN362R011
missense_variant
NM_004525.2:4978C>T
p.Arg1660Cys
Unknown
GEN362R012
missense_variant
c.4766G>A
p.Arg1589His
Unknown
GEN362R013
intron_variant
c.4692-35G>C
Unknown
GEN362R014
frameshift_variant
c.12437del
p.Gly4146GlufsTer2
De novo
GEN362R015
nonsynonymous_variant
Unknown
Unknown
GEN362R016
missense_variant
c.11107G>A
p.Asp3703Asn
Unknown
Unknown
GEN362R017
missense_variant
c.9929G>A
p.Arg3310His
Unknown
Unknown
GEN362R018
nonsynonymous_variant
Unknown
Unknown
GEN362R019
missense_variant
c.2933C>T
p.Thr978Met
Unknown
Unknown
GEN362R020
missense_variant
c.775G>C
p.Gly259Arg
Unknown
Unknown
GEN362R021
missense_variant
c.149C>G
p.Thr50Ser
Unknown
Unknown
GEN362R022a
missense_variant
c.11663G>A
p.Arg3888His
Familial
Maternal and Paternal
Simplex
GEN362R022b
missense_variant
c.5209C>T
p.Leu1737Phe
Familial
Maternal and Paternal
Simplex
GEN362R023a
missense_variant
c.6160G>A
p.Asp2054Asn
Familial
Maternal and Paternal
Simplex
GEN362R023b
missense_variant
c.6160G>A
p.Asp2054Asn
Familial
Maternal and Paternal
Simplex
GEN362R024
missense_variant
c.12137G>A
p.Arg4046Gln
De novo
Simplex
GEN362R025
missense_variant
c.10887C>G
p.His3629Gln
De novo
GEN362R026
missense_variant
c.10887C>G
p.His3629Gln
De novo
Simplex
GEN362R027a
missense_variant
c.11335G>A
p.Asp3779Asn
Familial
Both parents
Multiplex
GEN362R028
stop_gained
c.1093C>T
p.Arg365Ter
Familial
Paternal
GEN362R029
missense_variant
c.5314G>A
p.Val1772Ile
Unknown
GEN362R030
missense_variant
c.2944G>T
p.Gly982Cys
De novo
Simplex
GEN362R031
splice_site_variant
c.10393+1G>A
Unknown
GEN362R032
stop_gained
c.2320G>T
p.Gly774Ter
Unknown
GEN362R033
missense_variant
c.7931T>A
p.Val2644Glu
Unknown
GEN362R034
missense_variant
c.11938A>G
p.Thr3980Ala
Unknown
GEN362R035a
missense_variant
c.10836G>T
p.Gln3612His
Unknown
GEN362R035b
frameshift_variant
c.5406_5407del
p.His1802GlnfsTer39
Unknown
GEN362R036
frameshift_variant
c.11469_11472del
p.Cys3823TrpfsTer159
De novo
GEN362R037
missense_variant
c.4878T>A
p.Asp1626Glu
De novo
GEN362R038
missense_variant
c.3371A>G
p.Lys1124Arg
De novo
GEN362R039
missense_variant
c.4234C>T
p.Arg1412Trp
De novo
Simplex
GEN362R040
splice_site_variant
c.8452+1G>A
De novo
GEN362R041
missense_variant
c.4927C>T
p.Arg1643Trp
De novo
GEN362R042
synonymous_variant
c.2772G>A
p.Glu924%3D
De novo
GEN362R043
missense_variant
c.12926T>A
p.Leu4309Gln
De novo
GEN362R044
missense_variant
c.9911G>T
p.Arg3304Leu
De novo
GEN362R045
missense_variant
c.4403T>C
p.Ile1468Thr
De novo
GEN362R046
missense_variant
c.100C>T
p.Arg34Cys
De novo
GEN362R047a
missense_variant
c.6815G>A
p.Arg2272His
Familial
Maternal
Multiplex (monozygotic twins)
GEN362R047b
missense_variant
c.12725A>G
p.Asp4242Gly
Familial
Paternal
Multiplex (monozygotic twins)
GEN362R048a
missense_variant
c.11503C>T
p.Arg3835Cys
Familial
Both parents
GEN362C001
missense_variant
rs13391626
c.5825T>G;c.3536T>G;c.5840T>G;c.3551T>G
p.Val1942Gly;p.Val1179Gly;p.Val1947Gly;p.Val1184Gly
Seaver Autism Research Center & AGRE (397 ASD cases/450 controls)
Discovery
GEN362C002
gene_variant
Seaver Autism Research Center & AGRE (397 ASD cases/450 controls)
Discovery
GEN362C003
gene_variant
Seaver Autism Research Center & AGRE (397 ASD cases/450 controls)
Discovery
GEN362C004
gene_variant
Seaver Autism Research Center & AGRE (397 ASD cases/450 controls)
Discovery
GEN362C005
gene_variant
Seaver Autism Research Center & AGRE (397 ASD cases/450 controls)
Discovery
GEN362C006
gene_variant
Seaver Autism Research Center & AGRE (397 ASD cases/450 controls)
Discovery
GEN362C007
synonymous_variant
rs2075249
c.3054C>A;c.765C>A
p.(=)
ARRA-Broad (430 cases, 379 controls)
Discovery
GEN362C008
intron_variant
rs2075255
c.3550+18T>G;c.1261+18T>G
ARRA-Broad (430 cases, 379 controls)
Discovery
GEN362C009
synonymous_variant
rs831042
c.3660A>G;c.1371A>G
p.(=)
ARRA-Broad (430 cases, 379 controls)
Discovery
GEN362C010
intron_variant
rs2075254
c.3550+14C>T;c.1261+14C>T
ARRA-Broad (430 cases, 379 controls)
Discovery
GEN362C011
intron_variant
rs831041
c.3667+20A>C;c.1378+20A>C
ARRA-Broad (430 cases, 379 controls)
Discovery
GEN362C012
synonymous_variant
rs831043
c.3069A>G;c.780A>G
p.(=)
ARRA-Broad (430 cases, 379 controls)
Discovery
GEN362C013
synonymous_variant
rs2229267
c.4875T>C;c.2586T>C;c.4890T>C;c.2601T>C
p.(=)
ARRA-Broad (430 cases, 379 controls)
Discovery
GEN362C014
intron_variant
rs830973
c.4294+19C>T;c.2005+19C>T;c.4309+19C>T;c.2020+19C>T
ARRA-Broad (430 cases, 379 controls)
Discovery
GEN362C015
synonymous_variant
rs2241190
c.2460A>G;c.171A>G
p.(=)
ARRA-Broad (430 cases, 379 controls)
Discovery
GEN362C016
gene_variant
ARRA-Broad (430 cases, 379 controls)
Discovery
GEN362C017
intergenic_variant
rs13014164
315 ASD cases, 1115 healthy controls (Taiwanese Han)
Discovery
No Animal Model Data Available
Summary Statistics:
Total Interactions: 78
Total Publications: 35
Show all nodes
Hide non-ASD
Interactor Symbol
Interactor Name
Interactor Organism
Entrez ID
Uniprot ID
Interaction Type
Evidence
Reference
AMBN
Ameloblastin
258
Q9NP70-2
IP; LC-MS/MS
Huttlin EL , et al. 2015
ANKS1B
ankyrin repeat and sterile alpha motif domain containing 1B
56899
B7Z9I9
Y2H
Petersen HH , et al. 2003
ARHGAP19
Rho GTPase activating protein 19
84986
Q14CB8
IP; LC-MS/MS
Huttlin EL , et al. 2015
ATN1
atrophin 1
1822
P54259
Y2H
Lim J , et al. 2006
CCDC59
coiled-coil domain containing 59
29080
Q9P031
IP; LC-MS/MS
Huttlin EL , et al. 2015
CLU
clusterin
1191
P10909
Affinity chromatography; Solid phase binding assay; Gel blot overlay assay
Kounnas MZ , et al. 1995
CTGF
Connective tissue growth factor
1490
P29279
IP; LC-MS/MS
Huttlin EL , et al. 2015
DAB2
disabled homolog 2, mitogen-responsive phosphoprotein (Drosophila)
1601
P98082
Y2H; GST; IP/WB
Oleinikov AV , et al. 2000
DLG2
discs, large homolog 2 (Drosophila)
1740
Q15700
Y2H; Surface plasmon resonance (SPR)
Larsson M , et al. 2003
DLG3
discs, large homolog 3 (Drosophila)
1741
Q92796
Y2H; Surface plasmon resonance (SPR)
Larsson M , et al. 2003
DLK2
Protein delta homolog 2
65989
Q6UY11-2
IP; LC-MS/MS
Huttlin EL , et al. 2015
EGFL6
EGF-like-domain, multiple 6
25975
Q8IUX8
IP; LC-MS/MS
Huttlin EL , et al. 2015
FAM19A3
Protein FAM19A3
284467
Q7Z5A8-2
IP; LC-MS/MS
Huttlin EL , et al. 2015
FAM19A4
Protein FAM19A4
151647
Q96LR4
IP; LC-MS/MS
Huttlin EL , et al. 2015
FGFRL1
fibroblast growth factor receptor-like 1
53834
A0PJ49
IP; LC-MS/MS
Huttlin EL , et al. 2015
FMR1
fragile X mental retardation 1
2332
G8JLE9
PAR-CLIP; RNA immunoprecipitation (RIP)
Ascano M Jr , et al. 2012
GC
Vitamin D-binding protein
100008994
P53789
Affinity chromatography; Surface plasmon resonance (SPR)
Nykjaer A , et al. 2001
INSL6
Insulin-like peptide INSL6
11172
Q9Y581
IP; LC-MS/MS
Huttlin EL , et al. 2015
LCN2
lipocalin 2
3934
P80188
Surface plasmon resonance (SPR)
Hvidberg V , et al. 2005
LPA
lipoprotein, Lp(a)
4018
P08519
Surface plasmon resonance (SPR)
Niemeier A , et al. 1999
LPL
lipoprotein lipase
4023
P06858
Solid phase binding assay
Kounnas MZ , et al. 1993
LRP2BP
LRP2 binding protein
55805
Q9P2M1
Y2H; GST; Surface plasmon resonance (SPR)
Petersen HH , et al. 2003
LRPAP1
low density lipoprotein receptor-related protein associated protein 1
4043
P30533
IP; LC-MS/MS
Huttlin EL , et al. 2015
MDK
midkine (neurite growth-promoting factor 2)
4192
P21741
Affinity chromatography; MS; Solid phase I-125 binding assay
Muramatsu H , et al. 2000
MEPE
Matrix extracellular phosphoglycoprotein
56955
Q9NQ76
IP; LC-MS/MS
Huttlin EL , et al. 2015
PDGFD
Platelet-derived growth factor D
80310
Q9GZP0-2
IP; LC-MS/MS
Huttlin EL , et al. 2015
Ppara
peroxisome proliferator activated receptor alpha
19013
P23204
Luciferase reporter assay; EMSA
Cabezas F , et al. 2011
Pparg
peroxisome proliferator activated receptor gamma
19016
P37238
EMSA
Cabezas F , et al. 2011
RIBC2
RIB43A-like with coiled-coils protein 2
26150
Q9H4K1
IP; LC-MS/MS
Huttlin EL , et al. 2015
SOST
Sclerostin
50964
Q9BQB4
IP; LC-MS/MS
Huttlin EL , et al. 2015
VIP
VIP peptides
7432
P01282
IP; LC-MS/MS
Huttlin EL , et al. 2015
ZBTB48
zinc finger and BTB domain containing 48
3104
P10074
IP; LC-MS/MS
Huttlin EL , et al. 2015
ZFP41
Zinc finger protein 41 homolog
286128
Q8N8Y5
IP; LC-MS/MS
Huttlin EL , et al. 2015
ZNF224
zinc finger protein 224
7767
Q9NZL3
IP; LC-MS/MS
Huttlin EL , et al. 2015
ZNF264
zinc finger protein 264
9422
O43296
IP; LC-MS/MS
Huttlin EL , et al. 2015
ZNF408
zinc finger protein 408
79797
B4DXY4
IP; LC-MS/MS
Huttlin EL , et al. 2015
ZSCAN29
zinc finger and SCAN domain containing 29
146050
Q05BJ4
IP; LC-MS/MS
Huttlin EL , et al. 2015
Apba2
amyloid beta (A4) precursor protein-binding, family A, member 2
11784
P98084
Y2H
Gotthardt M , et al. 2000
Dab1
disabled 1
13131
P97318
Y2H; GST
Trommsdorff M , et al. 1998
DLG4
DLG4discs, large homolog 4 (Drosophila)
1742
P78352
Y2H; GST
Gotthardt M , et al. 2000
Fut4
fucosyltransferase 4
14345
Q11127
IP; MS
Hashii N , et al. 2009
GIPC1
GIPC PDZ domain containing family, member 1
10755
O14908
Y2H; GST
Gotthardt M , et al. 2000
Gprasp1
G protein-coupled receptor associated sorting protein 1
67298
Q5U4C1
Y2H; GST
Patrie KM , et al. 2001
Igf1
insulin-like growth factor 1
16000
E9PU89
IP/WB
Bols M , et al. 2010
ITGB1BP1
integrin beta 1 binding protein 1
9270
O14713
Y2H; GST
Gotthardt M , et al. 2000
Magi1
membrane associated guanylate kinase, WW and PDZ domain containing 1
14924
Q6RHR9
Y2H; GST
Patrie KM , et al. 2001
MAPK8IP1
mitogen-activated protein kinase 8 interacting protein 1
9479
Q6NUQ9
Y2H; GST
Gotthardt M , et al. 2000
MAPK8IP2
mitogen-activated protein kinase 8 interacting protein 2
23542
Q13387
Y2H; GST
Gotthardt M , et al. 2000
NOS1AP
nitric oxide synthase 1 (neuronal) adaptor protein
9722
O75052
Y2H; GST
Gotthardt M , et al. 2000
NOS1AP
nitric oxide synthase 1 (neuronal) adaptor protein
70729
Q9D3A8
Y2H; GST
Gotthardt M , et al. 2000
Pip5k1c
phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma
18717
O70161
Y2H; GST
Gotthardt M , et al. 2000
Shh
sonic hedgehog
20423
Q62226
GST
Christ A , et al. 2012
SYNJ2BP
synaptojanin 2 binding protein
55333
P57105
Y2H; GST
Gotthardt M , et al. 2000
Tln1
talin 1
21894
P26039
Y2H
Gotthardt M , et al. 2000
Alb
albumin
24186
P02770
in vitro binding assay; I-125 binding assay
Cui S , et al. 1996
Ankra2
ankyrin repeat, family A (RFXANK-like), 2
68558
Q6NZJ1
Y2H; GST; I-125 binding assay
Rader K , et al. 2000
Apoe
apolipoprotein E
25728
P02650
Ligand binding assay
Veinbergs I , et al. 2001
B2m
beta-2 microglobulin
24223
P07151
Ligand blotting
Orlando RA , et al. 1998
CST3
cystatin C
1471
P01034
Quartz-crystal microbalance
Kaseda R , et al. 2007
Cubn
cubilin (intrinsic factor-cobalamin receptor)
80848
O70244
in vitro binding assay
Yammani RR , et al. 2001
Cycs
cytochrome c, somatic
25309
P62898
Ligand blotting
Orlando RA , et al. 1998
Egf
epidermal growth factor
25313
P07522
Ligand blotting
Orlando RA , et al. 1998
Irs1
insulin receptor substrate 1
25467
P35570
I-125 binding assay
Orlando RA , et al. 1998
Ldlrap1
low density lipoprotein receptor adaptor protein 1
500564
D3ZAR1
Y2H; GST; IP/WB
Nagai M , et al. 2003
Lrpap1
low density lipoprotein receptor-related protein associated protein 1
116565
Q99068
Solid phase binding assay; Ligand blotting
Orlando RA and Farquhar MG 1994
Lyz2
lysozyme 2
25211
Q6PDV1
Ligand blotting
Orlando RA , et al. 1998
Prl
prolactin
24683
B5DEM6
Ligand blotting
Orlando RA , et al. 1998
Tg
thyroglobulin
24826
G3V6V3
Solid phase binding assay
Zheng G , et al. 1998
Ttr
transthyretin
24856
P02767
Ligand blotting
Sousa MM , et al. 2000
THBS1
thrombospondin 1
7057
P07996
Solid phase binding assay
Godyna S , et al. 1995
APOB
N/A
100009101
N/A
Ligand blotting; Solid phase binding assay
Chen Z , et al. 1999
APOH
apolipoprotein H (beta-2-glycoprotein I)
350
P02749
Surface plasmon resonance (SPR)
Moestrup SK , et al. 1998
NHE-3
Sodium/hydrogen exchanger 3
100009430
P26432
IP/WB
Biemesderfer D , et al. 1999
PLAU
plasminogen activator, urokinase
5328
P00749
Ligand blotting
Moestrup SK , et al. 1993
RBP1
retinol binding protein 1, cellular
5947
P09455
Surface plasmon resonance (SPR)
Christensen EI , et al. 1999
SERPINE1
serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1
5054
P05121
Ligand blotting
Moestrup SK , et al. 1993