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Relevance to Autism

Lrfn2 knockout mice were shown to exhibit autism-like behavioral abnormalities, including social withdrawal, decreased vocal communications, increased stereotyped activities and prepulse inhibition deficits in Morimura et al., 2017; functionally deficient LRFN2 missense variants were identified in Japanese autism and schizophrenia patients in the same report.

Molecular Function

The protein encoded by the LRFN2 gene promotes neurite outgrowth in hippocampal neurons, enhances the cell surface expression of 2 NMDA receptor subunits GRIN1 and GRIN2A, and may play a role in redistributing DLG4 to the cell periphery.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Autism-like behaviours and enhanced memory formation and synaptic plasticity in Lrfn2/SALM1-deficient mice.
ASD, SCZ
Positive Association
Genome-wide association study of antisocial personality disorder.
Antisocial personality disorder
Support
Integrating de novo and inherited variants in 42
ASD
Support
Heterozygous deletion of the LRFN2 gene is associated with working memory deficits.
Learning disability
Support
The contribution of de novo coding mutations to autism spectrum disorder
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN911R001 
 missense_variant 
 c.210G>C 
 p.Gln70His 
 Unknown 
  
  
 GEN911R002 
 missense_variant 
 c.565G>A 
 p.Ala189Thr 
 Unknown 
  
  
 GEN911R003 
 missense_variant 
 c.698C>T 
 p.Pro233Leu 
 Unknown 
  
  
 GEN911R004 
 missense_variant 
 c.740A>T 
 p.Asn247Ile 
  
  
  
 GEN911R005 
 missense_variant 
 c.797G>T 
 p.Gly266Val 
 Unknown 
  
  
 GEN911R006 
 missense_variant 
 c.821G>A 
 p.Arg274His 
 Familial 
 Paternal 
 Simplex 
 GEN911R007 
 missense_variant 
 c.1009G>A 
 p.Ala337Thr 
 Unknown 
  
  
 GEN911R008 
 missense_variant 
 c.1286C>A 
 p.Ser429Tyr 
  
  
  
 GEN911R009 
 missense_variant 
 c.1386G>C 
 p.Glu462Asp 
 Familial 
  
 Simplex 
 GEN911R010 
 missense_variant 
 c.1462G>A 
 p.Asp488Asn 
  
  
  
 GEN911R011 
 missense_variant 
 c.1418A>T 
 p.Asn473Ile 
 Unknown 
  
  
 GEN911R012 
 missense_variant 
 c.2308G>A 
 p.Asp770Asn 
 Unknown 
  
  
 GEN911R013 
 frameshift_variant 
 c.643del 
 p.Asp215IlefsTer12 
 De novo 
  
 Simplex 
 GEN911R014 
 missense_variant 
 c.1160G>A 
 p.Ser387Asn 
 De novo 
  
 Simplex 
 GEN911R015 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Multiplex 
 GEN911R016 
 missense_variant 
 c.1229G>A 
 p.Gly410Glu 
 De novo 
  
 Simplex 
 GEN911R017 
 missense_variant 
 c.983G>A 
 p.Arg328His 
 De novo 
  
 Simplex 

Common

Variant ID
Polymorphism
SNP ID
Allele Change
Residue Change
Population Origin
Population Stage
Author, Year
 GEN911C001 
 intergenic_variant 
 rs4714329 
  
  
 Meta-analysis cohort consisted of a discovery sample of 370 ASPD cases and 5850 controls, and a replication sample of 173 cases and 3766 controls (total of 543 cases and 9616 controls) 
 Discovery 
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
6
Deletion-Duplication
 12
 
6
Deletion-Duplication
 10
 
6
Deletion
 1
 
6
Deletion
 1
 

Model Summary

Lrfn2 homozygous null mice exhibit decreased body weight, social interaction, social approach, mating-induced USV, expression of the presynaptic protein PSD-95, spine density in the pyramidal neurons of the hippocampal CA1 region, length of the postsynaptic density, mEPSC frequency, GluA1 in the postsynaptic density and increase social withdrawal, number of silent synapses compared to wildtype controls.

References

Type
Title
Author, Year
Primary
Autism-like behaviours and enhanced memory formation and synaptic plasticity in Lrfn2/SALM1-deficient mice.

M_LRFN2_1_KO_HM

Model Type: Genetic
Model Genotype: Homozygous
Mutation: Mice with exon 2 of Lrfn2 replaced by a neo cassette. The neo cassette was removed by germline Cre recombination and heterozygous knockouts were backcrossed to C57BL/6J for six generations.
Allele Type: Knockout
Strain of Origin: C57BL/6J
Genetic Background: C57BL/6J
ES Cell Line:
Mutant ES Cell Line: E14
Model Source: 28604739

M_LRFN2_2_KO_HT

Model Type: Genetic
Model Genotype: Heterozygous
Mutation: Mice with exon 2 of Lrfn2 replaced by a neo cassette. The neo cassette was removed by germline Cre recombination and heterozygous knockouts were backcrossed to C57BL/6J for six generations.
Allele Type: Knockout
Strain of Origin: C57BL/6J
Genetic Background: C57BL/6J
ES Cell Line:
Mutant ES Cell Line: E14
Model Source: 28604739

M_LRFN2_1_KO_HM

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Hyperactivity1
Increased
Description: Lrfn2 knockout mice exhibit excessive running on a wheel over the duration of a week, compared to controls.
Exp Paradigm: NA
 Running wheel test
 2-6 months
Synaptic morphology: active zone1
Decreased
Description: Lrfn2 knockout mice show decreased expression of the presynaptic protein psd-95 compared to controls. lrfn2 knockout mice show no change in the transcript levels of psd-95 comapred to controls.
Exp Paradigm: Intensity and size of psd-95 positive puncta were measured.- immunohistochemistry
 Immunohistochemistry
 8 week
Neuroreceptor levels: glutamate receptors: nmda receptors1
Increased
Description: Lrfn2 knockout mice show increased expression of the nmda receptor subunit glun2a compared to controls. the number of glun2a positive puncta did not change in the hippocampus but the number of double-labelled glun2a and psd-95 puncta decreased, compared to controls. the transcript level of glun2a did not change compared to controls.
Exp Paradigm: Quantitative pcr (qrt-pcr)
 Quantitative pcr (qrt-pcr)
 8 week
Synaptic morphology: synaptic cleft length1
Increased
Description: Lrfn2 knockout mice show wider synaptic clefts compared to controls.
Exp Paradigm: NA
 Electron microscopy
 8 week
Synaptic morphology1
Abnormal
Description: Lrfn2 knockout mice show an increase in the ratio of perforated synapses to total asymmetric synapses in the ca1 radial layer of the dorsal hippocampus, compared to controls. no abnormality was detected at the presynaptic terminal.
Exp Paradigm: NA
 Electron microscopy
 8 week
Dendritic architecture: spine morphology1
Abnormal
Description: Lrfn2 knockout mice show abnormal spine morphology in the apical dendrites of dorsal ca1 pyramidal neurons in the hippocampus, comapred to controls. mutants show an increased in the number of oddly shanped spines, compared to controls. mutants show an increase in the length of the spines and a decrease in the mean width of the spine heads, compared to controls.
Exp Paradigm: NA
 Golgi-cox staining
 8 week
Synaptic morphology: active zone1
Decreased
Description: Lrfn2 knockout mice show decreased expression of the presynaptic protein psd-95 compared to controls. lrfn2 knockout mice show no change in the transcript levels of psd-95 comapred to controls.
Exp Paradigm: Intensity and size of psd-95 positive puncta were measured.-western blot
 Western blot
 8 week
Post-synaptic density size1
Decreased
Description: Lrfn2 knockout mice show a decrease in the length of the postsynaptic density but no change in its thickness, compared to controls.
Exp Paradigm: NA
 Electron microscopy
 8 week
Dendritic architecture: spine density1
Decreased
Description: Lrfn2 knockout mice show a decrease in the spine density in the hippocampal ca1 region, compared to controls.
Exp Paradigm: NA
 Golgi-cox staining
 8 week
Synaptic morphology: active zone1
Decreased
Description: Lrfn2 knockout mice show decreased expression of the presynaptic protein psd-95 compared to controls. lrfn2 knockout mice show no change in the transcript levels of psd-95 comapred to controls.
Exp Paradigm: Intensity and size of psd-95 positive puncta were measured.- quantitative pcr (qrt-pcr)
 Quantitative pcr (qrt-pcr)
 8 week
Neuroreceptor levels: glutamate receptors: nmda receptors1
Increased
Description: Lrfn2 knockout mice show increased expression of the nmda receptor subunit glun2a compared to controls. the number of glun2a positive puncta did not change in the hippocampus but the number of double-labelled glun2a and psd-95 puncta decreased, compared to controls. the transcript level of glun2a did not change compared to controls.
Exp Paradigm: Western blot
 Western blot
 8 week
Synaptic plasticity: hippocampal ltp1
Increased
Description: Lrfn2 knockout mice show increase of ltp of field excitatory post synaptic potentials at schaffer collateral/ca1 synapses, 60 mins after tetanus, compared to controls.
Exp Paradigm: NA
 Long term potentiation (ltp)
 8-14 weeks
Synaptic neuroreceptor ratio (nmdar/ampar) dependent transmission1
Increased
Description: Lrfn2 knockout mice show decreased ampar/nmdar ratios compared to wildtype controls.
Exp Paradigm: Ampar- to nmdar- mediated postsynaptic currents of ca1 pyramidal neurons were recorded.
 Whole-cell patch clamp
 8-14 weeks
Miniature post synaptic current frequency: excitatory1
Decreased
Description: Lrfn2 knockout mice show decreased mepsc frequency compared to wildtype controls.
Exp Paradigm: NA
 Whole-cell patch clamp
 8-14 weeks
Synaptic transmission1
Decreased
Description: Lrfn2 knockout mice show an increase in the number of silent synapses comapred to controls.
Exp Paradigm: The percentage of silent synapses were calculated using the formula 1-ln(failure rate at -70)/ln(failure rate at +40).
 Whole-cell patch clamp
 8-14 weeks
Decay kinetics of evoked post synaptic currents1
Decreased
Description: Lrfn2 knockout mice show lower failure rates at +40mv than at -70mv, comapred to controls.
Exp Paradigm: Minimal stimulation evoked ampar-epscs at -70mv and nmdar plus ampar-epscs at +40mv were recorded.
 Whole-cell patch clamp
 8-14 weeks
Perseveration1
Increased
Description: Lrfn2 knockout mice bury more marbles than controls. lrfn2 knockout mice run longer on a wheel compared to controls.
Exp Paradigm: Running wheel test
 Running wheel test
 2-6 months
Perseveration1
Increased
Description: Lrfn2 knockout mice bury more marbles than controls. lrfn2 knockout mice run longer on a wheel compared to controls.
Exp Paradigm: Marble-burying test
 Marble-burying test
 2-6 months
Startle response: acoustic stimulus1
Increased
Description: Lrfn2 knockout mice exhibit an enhanced startle response to an acoustic stimuli compared to controls.
Exp Paradigm: A 120db acoustic stimulus was used.
 Acoustic startle reflex test
 2-6 months
Sensorimotor gating1
Increased
Description: Lrfn2 knockout mice exhibit a decreased prepulse inhibition of the auditory startle response compared to controls.
Exp Paradigm: A 120db acoustic stimulus was used.
 Prepulse inhibition
 2-6 months
Social interaction1
Decreased
Description: Lrfn2 knockout mice show decrease in approaching and investigating a social target, decreased social sniffing and less physical contact with a dba2 male mouse, compared to controls.
Exp Paradigm: Three trials were carried out on 3 consecutive days.
 Reciprocal social interaction test
 2-6 months
Social approach1
Decreased
Description: Lrfn2 knockout mice show decrease in number of contacts with a caged unfamiliar mouse as well as time spent with the unfamiliar mouse compared to controls.
Exp Paradigm: Dba2 male mouse was used an the unfamiliar caged stranger in the three chamber test.
 Three-chamber social approach test
 2-6 months
Social withdrawal1
Increased
Description: Lrfn2 knockout mice frequently hid under bedding in the presence of other mice, compared to controls. this withdrawal phenotype inceased over the three days of trial.
Exp Paradigm: Three trials were carried out on 3 consecutive days.
 Reciprocal social interaction test
 2-6 months
Ultrasonic vocalization: interaction induced: opposite sex stimulus1
Decreased
Description: Lrfn2 knockout male mice emitted fewer ultrasonic vocalizations when encountering an estrous female, compared to controls.
Exp Paradigm: Number, duration, and peak frequency of calls were recorded.
 Monitoring ultrasonic vocalizations
 2-6 months
Size/growth1
Decreased
Description: Lrfn2 knockout mice show decrease in body weight compared to controls, in conventional group housing but not when housed individually.
Exp Paradigm: NA
 Body weight measurement
 6-10 weeks
Cued or contextual fear conditioning: memory of context: long term recall1
Increased
Description: Lrfn2 knockout mice exhibit no significant change in freezing behavior associated with contextual fear, 7 to 28 days after training, compared to controls. however, lrfn2 knockout mice discriminated between the training box and the new box more than control mice till day 7, by exhibiting a greater number of freezing responses in the trianing box than in the new box.
Exp Paradigm: The duration of the contextual fear memory retention was measured in the training box and in a box with a different texture.
 Fear conditioning test
 2-6 months
Cued or contextual fear conditioning: memory of context1
Increased
Description: Lrfn2 knockout mice exhibit increase in freezing behavior associated with contextual fear, 1 hour, 1 day and 3 days after training, compared to controls.
Exp Paradigm: NA
 Fear conditioning test
 2-6 months
Spatial reference memory1
Increased
Description: Lrfn2 knockout mice reach the hidden platform faster than control mice, during the second probe trial.
Exp Paradigm: Four blocks of two training trials and two probe trials were carried out, 24hrs and 48 hrs after the trianing trial.
 Morris water maze test
 2-6 months
Targeted expression1
Decreased
Description: Lrfn2 knockout mice exhibit lack of lrfn2 protein in the cortex and the hippocampus compared to controls.
Exp Paradigm: NA
 Western blot
 Adult
Protein localization: synapse1
Decreased
Description: Lrfn2 knockout mice show reduced glua1 in the postsynaptic density fraction comapred to controls.
Exp Paradigm: NA
 Western blot
 NA
Ultrasonic vocalization: isolation induced1
 No change
 Monitoring ultrasonic vocalizations
 0-3weeks
Mortality/lethality1
 No change
 Genotypic ratio of progeny from heterozygous parents
 3-8 weeks
Anxiety1
 No change
 Elevated plus maze test
 2-6 months
Anxiety1
 No change
 Light-dark exploration test
 2-6 months
Anxiety1
 No change
 Open field test
 2-6 months
Cued or contextual fear conditioning: memory of cue1
 No change
 Fear conditioning test
 2-6 months
Spatial working memory1
 No change
 Morris water maze test
 2-6 months
Protein localization: synapse1
 No change
 Western blot
 NA
General locomotor activity1
 No change
 Home cage behavior
 2-6 months
General locomotor activity: ambulatory activity1
 No change
 Home cage behavior
 2-6 months
Motor coordination and balance1
 No change
 Accelerating rotarod test
 2-6 months
Brain anatomy1
 No change
 Histology
 Adult
Neuronal number: excitatory neurons1
 No change
 Immunohistochemistry
 5-8 month
Neuronal number: inhibitory neurons1
 No change
 Immunohistochemistry
 5-8 month
Neuroreceptor levels: glutamate receptors: ampa receptors1
 No change
 Western blot
 8 week
Neuroreceptor levels: glutamate receptors: nmda receptors1
 No change
 Quantitative pcr (qrt-pcr)
 8 week
Neuroreceptor levels: glutamate receptors: nmda receptors1
 No change
 Western blot
 8 week
Synaptic morphology: active zone1
 No change
 Western blot
 8 week
Miniature post synaptic current amplitude: excitatory1
 No change
 Whole-cell patch clamp
 8-14 weeks
Neurotransmitter release1
 No change
 Paired-pulse ratio
 8-14 weeks
Reproductive function1
 No change
 General observations
 Adult
Repetitive digging1
 No change
 Reciprocal social interaction test
 2-6 months
Olfaction1
 No change
 Response to olfactory stimuli
 2-6 months
Pain or nociception1
 No change
 Foot shock test
 2-6 months
Vision1
 No change
 Morris water maze test
 2-6 months
 Not Reported: Circadian sleep/wake cycle, Immune response, Maternal behavior, Physiological parameters, Seizure

M_LRFN2_2_KO_HT

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Targeted expression1
Decreased
Description: Lrfn2 knockout heterozygous mice exhibit reduced lrfn2 protein in the cortex and the hippocampus compared to controls.
Exp Paradigm: NA
 Western blot
 Adult
 Not Reported: Circadian sleep/wake cycle, Communications, Developmental profile, Emotion, Immune response, Learning & memory, Maternal behavior, Motor phenotype, Neuroanatomy / ultrastructure / cytoarchitecture, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior

 

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