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Relevance to Autism

A de novo missense variant in the KIF5C gene that was predicted to be damaging was identified in an autistic proband (Awadalla et al., 2010). Inherited missense variants in this gene that were predicted to be damaging were identified in Chinese ASD probands in Li et al., 2017. Phenotypic characterization of four previously published cases (from de Ligt et al., 2013, Poirier et al., 2013, Januar et al., 2014, and Cavallin et al., 2016) and two novel cases in Michels et al., 2017 implicated KIF5C missense variants as the cause of a neurodevelopmental disorder characterized by infantile-onset epilepsy, absent speech, malformations of cortical development, and, in three cases, stereotypic hand movements.

Molecular Function

Neuron-specific kinesin heavy chain (kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport)

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Direct measure of the de novo mutation rate in autism and schizophrenia cohorts.
ASD
Support
Large-scale targeted sequencing identifies risk genes for neurodevelopmental disorders
ASD, DD
Support
Exome sequencing of 457 autism families recruited online provides evidence for autism risk genes
ASD
Support
ASD, epilepsy/seizures
Support
Targeted sequencing and functional analysis reveal brain-size-related genes and their networks in autism spectrum disorders.
ASD
Support
Recurrent KIF5C mutation leading to frontal pachygyria without microcephaly.
DD
Absent speech, stereotypic hand movements, pachygy
Support
Integrating de novo and inherited variants in 42
ASD
Support
Somatic mutations in cerebral cortical malformations.
DD, epilepsy/seizures
Pachygyria
Support
KIF5C deficiency causes abnormal cortical neuronal migration, dendritic branching, and spine morphology in mice
Complex cortical dysplasia with other brain malfor
Support
Mutations in TUBG1, DYNC1H1, KIF5C and KIF2A cause malformations of cortical development and microcephaly.
Cortical malformations, microcephaly
Epilepsy/seizures
Support
De novo variants in neurodevelopmental disorders-experiences from a tertiary care center
DD
Support
Diagnostic exome sequencing in persons with severe intellectual disability.
ID
Epilepsy, ASD
Recent Recommendation
Mutations of KIF5C cause a neurodevelopmental disorder of infantile-onset epilepsy, absent language, and distinctive malformations of cortical deve...
Epilepsy/seizures, DD
Absent speech, stereotypic hand movements

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN389R001 
 missense_variant 
 C>T 
 R802C, R872C 
 De novo 
  
  
 GEN389R002 
 missense_variant 
 c.420G>A 
 p.Arg141Gln 
 De novo 
  
  
 GEN389R003 
 missense_variant 
 c.2439G>T 
 p.Gly814Val 
 Unknown 
  
  
 GEN389R004 
 missense_variant 
 c.1344A>G 
 p.Glu449Gly 
 Familial 
  
 Simplex 
 GEN389R005 
 missense_variant 
 c.1783C>T 
 p.Asp595= 
 Familial 
  
 Simplex 
 GEN389R006 
 missense_variant 
 c.2385C>T 
 p.Ala796Val 
 Familial 
  
 Simplex 
 GEN389R007 
 missense_variant 
 c.2541G>A 
 p.Arg848Lys 
 Familial 
  
 Simplex 
 GEN389R008 
 missense_variant 
 c.710A>T 
 p.Glu237Val 
 De novo (germline mosaicism) 
  
 Multiplex 
 GEN389R009 
 missense_variant 
 c.420G>A 
 p.Arg141Gln 
 De novo 
  
  
 GEN389R010 
 missense_variant 
 c.513G>T 
 p.Cys172Phe 
 Unknown 
  
  
 GEN389R011 
 missense_variant 
 c.420G>A 
 p.Arg141Gln 
 De novo 
  
  
 GEN389R012 
 missense_variant 
 c.420G>A 
 p.Arg141Gln 
 De novo 
  
  
 GEN389R013 
 missense_variant 
 c.1918G>A 
 p.Ser640= 
 De novo 
  
  
 GEN389R014 
 stop_gained 
 c.1824C>T 
 p.Leu608%3D 
 Familial 
 Paternal 
  
 GEN389R015 
 splice_site_variant 
 c.217+1G>A 
  
 Unknown 
  
  
 GEN389R016 
 stop_lost 
 c.768T>C 
 p.Asn256%3D 
 Unknown 
  
  
 GEN389R017 
 stop_lost 
 c.768T>C 
 p.Asn256%3D 
 Unknown 
  
  
 GEN389R018 
 missense_variant 
 c.1810C>T 
 p.Arg604Cys 
 Unknown 
  
  
 GEN389R019 
 missense_variant 
 c.200C>T 
 p.Ala67Val 
 Unknown 
  
  
 GEN389R020 
 stop_gained 
 c.2463C>T 
 p.Asn821%3D 
 Unknown 
  
  
 GEN389R021 
 stop_gained 
 c.1200C>T 
 p.Asp400%3D 
 Unknown 
  
  
 GEN389R022 
 stop_gained 
 c.2331G>T 
 p.Arg777Ser 
 Unknown 
  
  
 GEN389R023 
 stop_lost 
 c.1431T>C 
 p.Asn477%3D 
 Unknown 
  
  
 GEN389R024 
 stop_lost 
 c.510T>C 
 p.Thr170%3D 
 Unknown 
  
  
 GEN389R025 
 stop_lost 
 c.1361A>T 
 p.Glu454Val 
 Unknown 
  
  
 GEN389R026 
 missense_variant 
 c.1351G>C 
 p.Asp451His 
 Unknown 
  
  
 GEN389R027 
 missense_variant 
 c.2830G>T 
 p.Gly944Trp 
 Unknown 
  
  
 GEN389R028 
 missense_variant 
 c.571C>T 
 p.Arg191Ter 
 Unknown 
  
  
 GEN389R029 
 missense_variant 
 c.802G>A 
 p.Ala268Thr 
 Unknown 
  
  
 GEN389R030 
 missense_variant 
 c.420G>A 
 p.Leu140%3D 
 De novo 
  
 Unknown 
 GEN389R031 
 missense_variant 
 c.323T>A 
 p.Ile108Asn 
 De novo 
  
 Multiplex 
 GEN389R032 
 missense_variant 
 c.160C>T 
 p.Pro54Ser 
 De novo 
  
 Multiplex 
 GEN389R033 
 missense_variant 
 c.857G>A 
 p.Arg286Gln 
 De novo 
  
  
 GEN389R034 
 missense_variant 
 c.1996G>A 
 p.Glu666Lys 
 De novo 
  
 Simplex 
 GEN389R035 
 complex_structural_alteration 
  
  
 Unknown 
  
 Simplex 
 GEN389R036 
 missense_variant 
 c.542T>G 
 p.Met181Arg 
 Unknown 
  
 Simplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
2
Duplication
 1
 
2
Duplication
 1
 
2
Duplication
 1
 
2
Duplication
 1
 
2
Duplication
 1
 
2
Duplication
 1
 
2
Duplication
 1
 
2
Deletion
 7
 
2
Duplication
 2
 
2
Deletion
 5
 
2
Deletion
 1
 
2
Deletion-Duplication
 26
 
2
Deletion
 2
 
2
Deletion
 1
 

No Animal Model Data Available


Interactor Symbol Interactor Name Interactor Organism Entrez ID Uniprot ID Interaction Type Evidence Reference
tubulin beta chain P02554 CET; in vitro binding assay
Morikawa M , et al. 2015
AZIN1 antizyme inhibitor 1 51582 O14977 IP; LC-MS/MS
Huttlin EL , et al. 2015
C19ORF46 Nesprin-4 163183 Q8N205-2 IP; LC-MS/MS
Huttlin EL , et al. 2015
COG6 component of oligomeric golgi complex 6 57511 Q9Y2V7 IP; LC-MS/MS
Huttlin EL , et al. 2015
EXOC1 exocyst complex component 1 55763 Q9NV70 IP; LC-MS/MS
Huttlin EL , et al. 2015
FAT1 FAT tumor suppressor homolog 1 (Drosophila) 14107 F2Z4A3 IP; LC-MS/MS
Badouel C , et al. 2015
KLC1 kinesin light chain 1 3831 Q07866 IP; LC-MS/MS
Huttlin EL , et al. 2015
LOC100158003 tubulin alpha-1D chain-like 100158003 P02550 CET; in vitro binding assay
Morikawa M , et al. 2015
TRAK2 trafficking protein, kinesin binding 2 66008 O60296 IP; LC-MS/MS
Huttlin EL , et al. 2015
TRIP6 thyroid hormone receptor interactor 6 7205 Q15654 IP; LC-MS/MS
Huttlin EL , et al. 2015
DISC1 disrupted in schizophrenia 1 307940 Q810H6 GST
Taya S , et al. 2007

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