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Relevance to Autism

Loss of SLM2 (as known as KHDRBS3) was found to severely disrupt the alternative splicing regulation of NRXN1, NRXN2, and NRXN3 in mice (Traunmller et al., 2014). In a subsequent study (Traunmller et al., 2016), SLM2 was found to be essential for functional specification of glutamatergic synapses in the mouse hippocampus via a SLM2-dependent splicing program primarily consisting of only a few target messenger RNAs that encode synaptic proteins. Furthermore, genetic correction of a single SLM2-dependent target exon in NRXN1 was sufficient to rescue synaptic plasticity and behavioral defects in SLM2 knockout mice.

Molecular Function

This gene encodes an RNA-binding protein that plays a role in the regulation of alternative splicing and influences mRNA splice site selection and exon inclusion.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Alternative splicing coupled nonsense-mediated decay generates neuronal cell type-specific expression of SLM proteins.
Recent Recommendation
Control of neuronal synapse specification by a highly dedicated alternative splicing program.

Rare

No Rare Variants Available

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
8
Duplication
 1
 
8
Duplication
 1
 
8
Duplication
 3
 
8
Duplication
 3
 
8
Deletion
 1
 
8
Duplication
 2
 
8
Deletion
 3
 
8
Deletion-Duplication
 12
 

No Animal Model Data Available


Interactor Symbol Interactor Name Interactor Organism Entrez ID Uniprot ID Interaction Type Evidence Reference
FBXO32 F-box protein 32 114907 Q969P5 RNA immunoprecipitation (RIP)
Lei KF , et al. 2011
KHDRBS1 KH domain containing, RNA binding, signal transduction associated 1 10657 Q07666 IP/WB
Di Fruscio M , et al. 1999
KHDRBS1 KH domain containing, RNA binding, signal transduction associated 1 10657 Q07666 Y2H
Venables JP , et al. 1999
KHDRBS2 KH domain containing, RNA binding, signal transduction associated 2 202559 Q5VWX1 Y2H
Rual JF , et al. 2005
KHDRBS2 KH domain containing, RNA binding, signal transduction associated 2 202559 Q5VWX1 IP; LC-MS/MS
Huttlin EL , et al. 2015
KHDRBS3 KH domain containing, RNA binding, signal transduction associated 3 10656 O75525 Y2H
Venables JP , et al. 1999
PIK3R1 phosphoinositide-3-kinase, regulatory subunit 1 (alpha) 5295 P27986 IP/WB
Lee J and Burr JG 1999
RBMX RNA binding motif protein, X-linked 27316 P38159 Y2H
Venables JP , et al. 1999
RBMY1A1 RNA binding motif protein, Y-linked, family 1, member A1 5940 P0DJD3 Y2H; in vitro binding assay
Venables JP , et al. 1999
SAFB scaffold attachment factor B 6294 Q15424 IP/WB; Y2H
Sergeant KA , et al. 2007
SAFB2 scaffold attachment factor B2 9667 Q14151 IP/WB; Y2H
Sergeant KA , et al. 2007
SERPINB5 serpin family B member 5 5268 P36952 Y2H; IP/WB
Lei KF , et al. 2011
SHANK3 SH3 and multiple ankyrin repeat domains 3 85358 Q9BYB0 Y2H; GST
Sakai Y , et al. 2011
Nrxn2 neurexin II 18190 E9Q7X7 in vivo splicing assay; EMSA
Ehrmann I , et al. 2013
Nrxn3 neurexin III 18191 Q6P9K9 in vivo splicing assay; EMSA
Ehrmann I , et al. 2013

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