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Relevance to Autism

A de novo missense variant (p.Val404Met) was identified in the KCND2 gene in monozygotic twins affected with autism and severe, intractable seizures; functional analysis revealed the likely pathogenicity of this variant in that the p.Val404Met construct showed significantly slowed inactivation, consistent with a gain-of-function effect (PMID 24501278). In a genome-wide association study of 2165 participants from the Autism Genetic Resource Exchange (AGRE) performed to examine associations between genomic loci and endophenotypes associated with ASDs, it was shown that item 46 ("has overly serious facial expressions") on the Social Responsiveness Scale (SRS) significantly associates with the gene KCND2 (Connolly et al., 2012).

Molecular Function

Voltage-gated potassium (Kv) channels represent the most complex class of voltage-gated ion channels from both functional and structural standpoints. Their diverse functions include regulating neurotransmitter release, heart rate, insulin secretion, neuronal excitability, epithelial electrolyte transport, smooth muscle contraction, and cell volume. Four sequence-related potassium channel genes - shaker, shaw, shab, and shal - have been identified in Drosophila, and each has been shown to have human homolog(s). This gene encodes a member of the potassium channel, voltage-gated, shal-related subfamily, members of which form voltage-activated A-type potassium ion channels and are prominent in the repolarization phase of the action potential. This member mediates a rapidly inactivating, A-type outward potassium current which is not under the control of the N terminus as it is in Shaker channels.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
A genome-wide association study of autism incorporating autism diagnostic interview-revised, autism diagnostic observation schedule, and social res...
ASD
Positive Association
ASD
Support
KCND2 variants associated with global developmental delay differentially impair Kv4.2 channel gating
DD
ASD, epilepsy/seizures
Support
De Novo Sequence and Copy Number Variants Are Strongly Associated with Tourette Disorder and Implicate Cell Polarity in Pathogenesis.
TS
Support
Kv4.2 autism and epilepsy mutation enhances inactivation of closed channels but impairs access to inactivated state after opening.
Support
The genomic landscape of balanced cytogenetic abnormalities associated with human congenital anomalies.
PDD
CHD (Atrial septal defect)
Support
Exome sequencing of ion channel genes reveals complex profiles confounding personal risk assessment in epilepsy.
Epilepsy
Support
Integrating de novo and inherited variants in 42
ASD
Recent Recommendation
Exome sequencing identifies de novo gain of function missense mutation in KCND2 in identical twins with autism and seizures that slows potassium ch...
ASD, epilepsy

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN433R001 
 synonymous_variant 
 c.432C>T 
 p.Asn144= 
 Unknown 
  
 Unknown 
 GEN433R002 
 synonymous_variant 
 c.670C>A 
 p.Arg224= 
 Unknown 
  
 Unknown 
 GEN433R003 
 missense_variant 
 c.1616G>T 
 p.Arg539Leu 
 Unknown 
  
 Unknown 
 GEN433R004 
 missense_variant 
 c.1210G>A 
 p.Val404Met 
 De novo 
  
 Multiplex (monozygotic twins) 
 GEN433R005 
 translocation 
  
  
 De novo 
  
  
 GEN433R006 
 missense_variant 
 c.1270G>A 
 p.Ala424Thr 
 De novo 
  
 Simplex 
 GEN433R007 
 missense_variant 
 c.967G>A 
 p.Glu323Lys 
 Unknown 
  
  
 GEN433R008 
 missense_variant 
 c.1207C>G 
 p.Pro403Ala 
 Unknown 
  
  
 GEN433R009 
 missense_variant 
 c.1207C>G 
 p.Pro403Ala 
 De novo 
  
  
 GEN433R010 
 missense_variant 
 c.1210G>T 
 p.Val404Leu 
 De novo 
  
  
 GEN433R011 
 missense_variant 
 c.1210G>C 
 p.Val404Leu 
 De novo 
  
  
 GEN433R012 
 missense_variant 
 c.1210G>A 
 p.Val404Met 
 De novo 
  
  
 GEN433R013 
 stop_gained 
 c.331_332insAA 
 p.Cys111Ter 
 De novo 
  
  
 GEN433R014 
 missense_variant 
 c.1015G>A 
 p.Ala339Thr 
 De novo 
  
 Simplex 

Common

Variant ID
Polymorphism
SNP ID
Allele Change
Residue Change
Population Origin
Population Stage
Author, Year
 GEN433C001 
 intergenic_variant 
 rs10239799 
  
  
 Discovery cohort: 2165 participants from AGRE 
 Discovery 
 GEN433C002 
 intergenic_variant 
 rs10239799 
  
  
 Replication cohort: 1168 families from the Autism Genome Project (AGP) 
 Replication 
 GEN433C003 
 intron_variant 
 rs1990429 
 c.1115+18046A>G 
  
 243 ASD probands of Han Chinese descent recruited from the Child Development and Behavior Research Center of Harbin Medical University (Harbin, China) and 243 ethnically-matched controls. 
 Discovery 
 GEN433C004 
 intron_variant 
 rs7793864 
 c.1115+91454A>T 
  
 243 ASD probands of Han Chinese descent recruited from the Child Development and Behavior Research Center of Harbin Medical University (Harbin, China) and 243 ethnically-matched controls. 
 Discovery 
 GEN433C005 
 intron_variant 
 rs7800545 
 c.1115+27310A>G 
  
 243 ASD probands of Han Chinese descent recruited from the Child Development and Behavior Research Center of Harbin Medical University (Harbin, China) and 243 ethnically-matched controls. 
 Discovery 
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
7
Deletion
 2
 
7
Deletion-Duplication
 28
 
7
Deletion
 3
 
7
Deletion
 1
 
7
Deletion-Duplication
 12
 
7
Deletion
 1
 

No Animal Model Data Available


Interactor Symbol Interactor Name Interactor Organism Entrez ID Uniprot ID Interaction Type Evidence Reference
BAG3 BCL2-associated athanogene 3 9531 O95817 IP; LC-MS/MS
Huttlin EL , et al. 2015
CACNA1G calcium channel, voltage-dependent, T type, alpha 1G subunit 8913 O43497 IP/WB; GST
Anderson D , et al. 2010
DLG4 DLG4discs, large homolog 4 (Drosophila) 1742 P78352 Y2H; IP/WB; Immunofluorescence
Eldstrom J , et al. 2002
DPP10 dipeptidyl-peptidase 10 (non-functional) 57628 Q8N608 IP/WB; Electrophysiology; Immunofluorescence
Jerng HH , et al. 2004
DPP10 dipeptidyl-peptidase 10 (non-functional) 57628 Q8N608 Single-molecule Imaging
Kitazawa M , et al. 2015
DPP6 dipeptidyl-peptidase 6 1804 P42658 IP/WB; Electrophysiology; Immunofluorescence
Jerng HH , et al. 2004
FLNA filamin A, alpha 2316 P21333 Y2H; IP/WB; Immunofluorescence
Levy DI , et al. 2010
FLNC filamin C, gamma 2318 Q14315 Y2H; GST; IP/WB
Petrecca K , et al. 2000
GNB4 guanine nucleotide binding protein (G protein), beta polypeptide 4 59345 Q9HAV0 IP; LC-MS/MS
Huttlin EL , et al. 2015
HSPA8 heat shock 70kDa protein 8 3312 P11142 IP; LC-MS/MS
Huttlin EL , et al. 2015
KCNE4 Potassium voltage-gated channel subfamily E member 4 23704 Q8WWG9 Y2H; IP/WB; Electrophysiology; Immunofluorescence
Levy DI , et al. 2010
KCNIP1 Kv channel-interacting protein 1 30820 Q9NZI2 X-ray crystallography
Scannevin RH , et al. 2004
KCNIP2 Kv channel interacting protein 2 30819 Q9NS61 Y2H; IP/WB; Electrophysiology; Immunofluorescence
Levy DI , et al. 2010
KCTD17 potassium channel tetramerisation domain containing 17 79734 Q8N5Z5 IP; LC-MS/MS
Huttlin EL , et al. 2015
KCTD2 potassium channel tetramerisation domain containing 2 23510 Q14681 IP; LC-MS/MS
Huttlin EL , et al. 2015
KCTD5 potassium channel tetramerisation domain containing 5 54442 Q9NXV2 IP; LC-MS/MS
Huttlin EL , et al. 2015
NCS1 neuronal calcium sensor 1 23413 E9PAY3 IP/WB; Electrophysiology
Nakamura TY , et al. 2001
STUB1 STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase 10273 Q9UNE7 IP; LC-MS/MS
Huttlin EL , et al. 2015
FMR1 fragile X mental retardation 1 14265 P35922 HITS-CLIP
Darnell JC , et al. 2011
IL16 interleukin 16 16170 O54824 Y2H; GST
Kurschner C and Yuzaki M 1999
DPP6 dipeptidylpeptidase 6 29272 P46101 IP/WB
Dougherty K , et al. 2009
KCNIP2 Kv channel interacting protein 2 30819 Q9NS61 IP/WB; Electrophysiology
Foeger NC , et al. 2010

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