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Relevance to Autism

This gene was originally identified as an ASD candidate gene based on its enrichment in an autism-associated protein interaction module; sequencing of post-mortem brain tissue from 25 ASD cases resulted in the identification of significant non-synonymous variants in this gene with an expected false-positive rate at 0.1, confirming the involvement of this module with autism (Li et al., 2014).

Molecular Function

Receptor for glutamate that functions as ligand-gated ion channel in the central nervous system and plays an important role in excitatory synaptic transmission. This receptor binds domoate > kainate >> L-glutamate = quisqualate >> AMPA = NMDA.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Integrated systems analysis reveals a molecular network underlying autism spectrum disorders.
ASD
Positive Association
Association between the ionotropic glutamate receptor kainate3 (GRIK3) Ser310Ala polymorphism and schizophrenia in the Indian population.
SCZ
Positive Association
Association between the ionotropic glutamate receptor kainate 3 (GRIK3) ser310ala polymorphism and schizophrenia.
SCZ
Negative Association
No association between the ionotropic glutamate receptor kainate 3 gene ser310ala polymorphism and schizophrenia.
SCZ
Support
Rates, distribution and implications of postzygotic mosaic mutations in autism spectrum disorder.
ASD
Support
Deleterious coding variation associated with autism is shared across ancestries.
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Damaging coding variants within kainate receptor channel genes are enriched in individuals with schizophrenia, autism and intellectual disabilities.
ASD
Recent Recommendation
Genomic landscape of rare variants in a Chinese autism cohort and discovery of novel risk genes.
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN684R001 
 nonsynonymous_variant 
  
  
 Unknown 
  
 Unknown 
 GEN684R002 
 missense_variant 
 c.1910T>C 
 p.Ile637Thr 
 De novo 
  
 Simplex 
 GEN684R003 
 missense_variant 
 c.1756T>G 
 p.Phe586Val 
 Unknown 
  
 Unknown 
 GEN684R004 
 missense_variant 
 c.1928G>T 
 p.Trp643Leu 
 De novo 
  
  
 GEN684R005 
 missense_variant 
 c.914A>G 
 p.Gln305Arg 
 De novo 
  
  
 GEN684R006 
 missense_variant 
 c.316G>A 
 p.Val106Met 
 De novo 
  
  
 GEN684R007 
 missense_variant 
 c.847C>G 
 p.Arg283Gly 
 De novo 
  
  
 GEN684R008 
 missense_variant 
 c.1906C>T 
 p.Arg636Cys 
 De novo 
  
 Unknown 
 GEN684R009 
 missense_variant 
 c.1522A>C 
 p.Ile508Leu 
 De novo 
  
 Multiplex 
 GEN684R010 
 stop_gained 
 c.1473C>A 
 p.Tyr491Ter 
 De novo 
  
 Simplex 
 GEN684R011 
 missense_variant 
 c.1124C>T 
 p.Thr375Ile 
 De novo 
  
 Simplex 
 GEN684R012 
 synonymous_variant 
 c.714G>A 
 p.Ala238= 
 De novo 
  
 Simplex 
 GEN684R013 
 missense_variant 
 c.323C>T 
 p.Ala108Val 
 De novo 
  
 Simplex 
 GEN684R014 
 missense_variant 
 c.245A>T 
 p.Asp82Val 
 De novo 
  
 Multiplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
1
Deletion-Duplication
 11
 

No Animal Model Data Available

No PIN Data Available
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