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Relevance to Autism

De novo variants in the GPC gene have been identified in ASD probands, including de novo missense variants in probands from the Simons Simplex Collection and the Autism Sequencing Consortium (Kong et al., 2012; De Rubeis et al., 2014; Iossifov et al., 2014; Yuen et al., 216; Yuen et al., 2017; Turner et al., 2017). Functional assessment of the ASD-associated p.Met133Thr missense variant, which was originally identified in a proband from the Simons Simplex Collection, in Drosophila using an overexpression-based strategy in Macrogliese et al., 2022 demonstrated that flies overexpressing GPC5-p.Met133Thr exhibited increased lethality when compared with reference protein, indicating a gain-of-function effect.

Molecular Function

Cell surface heparan sulfate proteoglycans are composed of a membrane-associated protein core substituted with a variable number of heparan sulfate chains. Members of the glypican-related integral membrane proteoglycan family (GRIPS) contain a core protein anchored to the cytoplasmic membrane via a glycosyl phosphatidylinositol linkage. These proteins may play a role in the control of cell division and growth regulation.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD
Support
Rate of de novo mutations and the importance of father's age to disease risk.
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Genomic Patterns of De Novo Mutation in Simplex Autism
ASD
Support
Whole genome sequencing resource identifies 18 new candidate genes for autism spectrum disorder
ASD
Support
Genome-wide characteristics of de novo mutations in autism
ASD
Recent Recommendation
Drosophila functional screening of de novo variants in autism uncovers damaging variants and facilitates discovery of rare neurodevelopmental diseases
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1323R001 
 missense_variant 
 c.398T>C 
 p.Met133Thr 
 De novo 
  
 Simplex 
 GEN1323R002 
 synonymous_variant 
 c.304C>A 
 p.Arg102%3D 
 De novo 
  
 Simplex 
 GEN1323R003 
 intron_variant 
 c.1281-49306T>C 
  
 De novo 
  
 Simplex 
 GEN1323R004 
 intron_variant 
 c.1561+3637C>T 
  
 De novo 
  
 Simplex 
 GEN1323R005 
 intron_variant 
 c.1562-125313T>C 
  
 De novo 
  
 Simplex 
 GEN1323R006 
 missense_variant 
 c.1292G>A 
 p.Arg431His 
 De novo 
  
  
 GEN1323R007 
 intron_variant 
 c.1281-52725C>T 
  
 De novo 
  
 Simplex 
 GEN1323R008 
 intron_variant 
 c.1562-158138T>A 
  
 De novo 
  
 Simplex 
 GEN1323R009 
 intron_variant 
 c.1561+85485A>G 
  
 De novo 
  
 Simplex 
 GEN1323R010 
 intron_variant 
 c.1561+47588T>A 
  
 De novo 
  
 Multiplex 
 GEN1323R011 
 intron_variant 
 c.1561+6983T>C 
  
 De novo 
  
 Simplex 
 GEN1323R012 
 intron_variant 
 c.1401+85263C>T 
  
 De novo 
  
 Simplex 
 GEN1323R013 
 intron_variant 
 c.1281-57674C>T 
  
 De novo 
  
 Simplex 
 GEN1323R014 
 intron_variant 
 c.1562-49776A>G 
  
 De novo 
  
 Multiplex 
 GEN1323R015 
 intron_variant 
 c.1280+8246C>G 
  
 De novo 
  
 Multiplex 
 GEN1323R016 
 intron_variant 
 c.1562-67354A>C 
  
 De novo 
  
 Multiplex 
 GEN1323R017 
 intron_variant 
 c.326-21446A>G 
  
 De novo 
  
 Simplex 
 GEN1323R018 
 intron_variant 
 c.163+7130T>A 
  
 De novo 
  
 Multiplex 
 GEN1323R019 
 intron_variant 
 c.1562-186669T>A 
  
 De novo 
  
 Multiplex 
 GEN1323R020 
 intron_variant 
 c.326-104875A>G 
  
 De novo 
  
 Simplex 
 GEN1323R021 
 intron_variant 
 c.1562-353771C>T 
  
 De novo 
  
 Multiplex 
 GEN1323R022 
 intron_variant 
 c.1562-136741T>C 
  
 De novo 
  
 Multiplex 
 GEN1323R023 
 intron_variant 
 c.1154+13782A>G 
  
 De novo 
  
 Multiplex 
 GEN1323R024 
 intron_variant 
 c.1561+129204T>C 
  
 De novo 
  
 Multiplex 
 GEN1323R025 
 intron_variant 
 c.1562-336044A>C 
  
 De novo 
  
 Multiplex 
 GEN1323R026 
 intron_variant 
 c.326-41070C>T 
  
 De novo 
  
 Simplex 
 GEN1323R027 
 intron_variant 
 c.1401+90476A>G 
  
 De novo 
  
 Simplex 
 GEN1323R028 
 intron_variant 
 c.1562-266106T>C 
  
 De novo 
  
 Simplex 
 GEN1323R029 
 stop_gained 
 c.304C>T 
 p.Arg102Ter 
 De novo 
  
 Simplex 
 GEN1323R030 
 missense_variant 
 c.1352T>C 
 p.Ile451Thr 
 De novo 
  
 Simplex 
 GEN1323R031 
 missense_variant 
 c.1513G>A 
 p.Gly505Arg 
 De novo 
  
 Simplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
13
Duplication
 1
 
13
Deletion
 1
 
13
Duplication
 2
 
13
Duplication
 1
 
13
Deletion
 1
 
13
Duplication
 1
 
13
Deletion
 1
 
13
Deletion
 1
 
13
Deletion
 1
 
13
N/A
 1
 
13
Deletion
 1
 
13
Duplication
 1
 
13
Deletion
 1
 
13
Deletion
 1
 
13
Duplication
 1
 
13
Deletion-Duplication
 2
 
13
Duplication
 6
 
13
Deletion
 1
 
13
Deletion
 1
 
13
Deletion-Duplication
 15
 
13
Deletion-Duplication
 2
 
13
Duplication
 1
 
13
Deletion
 1
 

No Animal Model Data Available

 

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