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Relevance to Autism

Single nucleotide polymorphism (SNP) array analysis showed a de novo 280 kb deletion on chromosome 16q23.2 involving the GAN gene in a girl with ASD and developmental delay.

Molecular Function

This gene encodes a member of the cytoskeletal BTB/kelch (Broad-Complex, Tramtrack and Bric a brac) repeat family. The encoded protein plays a role in neurofilament architecture and is involved in mediating the ubiquitination and degradation of some proteins. Defects in this gene are a cause of giant axonal neuropathy (GAN).

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Haploinsufficiency of CMIP in a girl with autism spectrum disorder and developmental delay due to a de novo deletion on chromosome 16q23.2.
ASD
DD
Support
Integrating de novo and inherited variants in 42
ASD
Support
De Novo Damaging DNA Coding Mutations Are Associated With Obsessive-Compulsive Disorder and Overlap With Tourette's Disorder and Autism.
OCD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN383R001 
 copy_number_loss 
  
  
 De novo 
  
 Simplex 
 GEN383R002 
 missense_variant 
 c.1634G>A 
 p.Arg545His 
 De novo 
  
 Simplex 
 GEN383R003 
 missense_variant 
 c.36C>G 
 p.His12Gln 
 De novo 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
16
Duplication
 1
 
16
Duplication
 2
 
16
Duplication
 1
 
16
Deletion
 1
 
16
Deletion
 1
 
16
Duplication
 6
 
16
Deletion-Duplication
 14
 
16
Deletion
 2
 
16
Deletion
 6
 
16
Duplication
 1
 
16
Deletion
 5
 

No Animal Model Data Available

 

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