16q23.2-q24.1CNV Type: Deletion
Largest CNV size: 5015756 bp
Statistics Box:
Number of Reports: 6
Number of Reports: 6
Summary Information
Summary statement in development
Additional Locus Information
References
Major Reports
Title
Author, Year
Report Class
CNV Type
Multiple recurrent de novo CNVs, including duplications of the 7q11.23 Williams syndrome region, are strongly associated with autism.
Deletion
An evidence-based approach to establish the functional and clinical significance of copy number variants in intellectual and developmental disabili...
Deletion
Use of array CGH to detect exonic copy number variants throughout the genome in autism families detects a novel deletion in TMLHE.
Deletion
Minor Reports
Title
Author, Year
Report Class
CNV Type
Rare de novo and transmitted copy-number variation in autistic spectrum disorders.
Deletion
Paternally inherited cis-regulatory structural variants are associated with autism.
Deletion
Cases
Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
brandler_18_ASD_replication_cases
Affected individuals from MSSNG cohort (1395 cases from 1187 families) and the Simons Simplex 2 (SSC2) cohort (584 cases from simplex quad families)
1979
Cases diagnosed with ASD
N/A
N/A
5014902
1
0
1
celestino-soper_11_ASD_discovery_cases
ASD probands from Simons Simplex Collection (SSC) trios. 90 of the probands in this study were also used in the Sanders et al. 2011 CNV report.
99
ASD
87.88% Male
4772529
1
0
1
kaminsky_11_DD/ID/ASD_discovery_cases
Cases from the International Standards for Cytogenomic Arrays (ISCA) consortium
15749
Unexplained developmental delay, intellectual disability, dysmorphic features, multiple congenital anomalies, autism spectrum disorders, or clinical features suggestive of a chromosomal syndrome
NA
NA
3961030
1
0
1
krumm_15_ASD_discovery_cases
Probands from the Simons Simplex Collection
2377
Diagnosis of ASD
N/A
N/A
3512621
1
0
1
levy_11_ASD_discovery_cases
Autistic probands from 887 families from the Simons Simplex Collection (SSC)
858
ASD
87.06% Male
5015756
1
0
1
sanders_11_ASD_discovery_cases
Autistic probands from the Simons Simplex Collection (SSC). 872 probands in quartet families, 272 probands in trios.
1124
ASD diagnosis: 89.5% autism; 8.5% PDD-NOS, 2% Asperger syndrome. Mean full-scale IQ 85.1 1.5 (mean verbal IQ, 81.9 1.7; mean non-verbal IQ, 88.4 1.4)
Mean, 9.1 yrs.
86.1% Male
5010284
1
0
1
Controls
Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
kaminsky_11_DD/ID/ASD_discovery_controls
Controls from the International Standards for Cytogenomic Arrays (ISCA) consortium
10118
Controls
NA
NA
NA
NA
NA
NA
krumm_15_ASD_discovery_controls
Unaffected siblings from quad families from the Simons Simplex Collection
1786
Control
N/A
N/A
0
0
0
0
levy_11_ASD_discovery_controls
Unaffected siblings of autistic probands from 887 families from the Simons Simplex Collection (SSC)
863
Control
47.97% Male
0
0
0
0
sanders_11_ASD_discovery_controls
Matched siblings of autistic probands from the Simons Simplex Collection (SSC).
872
Controls
Mean, 10.0 yrs.
0
0
0
0
Cases
Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
brandler_18_ASD_replication_cases
N/A
WGS
Illumina HiSeq X10
ForestSV, Lumpy, Manta, Mobster, SV2
None
celestino-soper_11_ASD_discovery_cases
aCGH
Agilent 1M
ADM-2
Agilent Feature Extraction v10.7.3.1, Agilent DNA Analytics v4.0.76
Solid phase hybridization (Illumina 1M SNP), qPCR
kaminsky_11_DD/ID/ASD_discovery_cases
NA
aCGH
Agilent 44K, Agilent 105K
Feature Extraction, DNA Analytics
FISH, qPCR, MLPA, aCGH, standard G-banded chromosome analysis
krumm_15_ASD_discovery_cases
N/A
WES
CoNIFER, XHMM
Solid phase hybridization (Illumina 1M, 1 M Duo, or Omni 2.5)
levy_11_ASD_discovery_cases
aCGH
NimbleGen HD2
HMM
sanders_11_ASD_discovery_cases
White non-Hispanic, 74.5%; mixed, 9.3%, Asian, 4.3%, White Hispanic, 4.0%, African-American, 3.8%; other, 4.2&
Solid phase hybridization
Illumina 1M v1, Illumina 1M v3
PennCNV, QuantiSNP, GNOSIS
qPCR
Controls
Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
kaminsky_11_DD/ID/ASD_discovery_controls
NA
aCGH
Agilent 44K, Agilent 105K
Feature Extraction, DNA Analytics
krumm_15_ASD_discovery_controls
N/A
WES
CoNIFER, XHMM
None
levy_11_ASD_discovery_controls
aCGH
NimbleGen HD2
HMM
sanders_11_ASD_discovery_controls
Solid phase hybridization
Illumina 1M v1 or Illumina 1M v3
PennCNV, QuantiSNP, GNOSIS
Cases
Patient ID
Author, Year
Age
Gender
Primary Diagnosis
Clinical Profile
Cognitive Profile
CNV Start
CNV End
CNV Size
Genome Build
Type Method
Validation
brandler_18_ASD_replication_cases-caseSSC00315
N/A
M
ASD
Case from SSC_phase2 cohort
81144651
86159551
5014901
GRCh38
Deletion
No
celestino-soper_11_ASD_discovery_cases-11327
NA
M
ASD
NA
NA
81149830
85922358
4772529
GRCh38
Deletion
Yes
kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00002485
NA
NA
Developmental delay/intellectual disability/ASD
Clinical profile NA
Cognitive profile NA
81753762
85714791
3961030
GRCh38
Deletion
Yes
krumm_15_ASD_discovery_cases-case11327.p1
N/A
Male
ASD
Proband from the Simons Simplex Collection (SSC). Family type: Quad
81147297
84659917
3512621
GRCh38
Deletion
Yes
levy_11_ASD_discovery_cases-11327.p1
NA
M
ASD
NA
NA
81144162
86159916
5015755
GRCh38
Deletion
No
sanders_11_ASD_discovery_cases-11327.p1
11.3
M
ASD
NA
Full-scale IQ, 84; non-verbal IQ, 86; verbal IQ, 83
81147575
86157858
5010284
GRCh38
Deletion
Yes
Controls
No Control Data Available
Cases
Patient ID
Validation Description
Primary Disorder Inheritence
Inheritence
Family Profile
Disease Segregation
Gene Content
Altered Gene Expression
brandler_18_ASD_replication_cases-caseSSC00315
No validation step reported
De novo
MIR4720,PPIAP51,MIR7854,MIR6504,RN7SKP176,MTCYBP28,RN7SKP190,MIR8058,RN7SL134P,MIR3182,HSBP1,RNA5SP432,ADAD2,COX6CP16,LINC00311,MIR5093,RN7SL381P,MIR1910,RNU1-103P,MIR6774,LINC02132,GAN,SDR42E1,MPHOSPH6,MLYCD,OSGIN1,NECAB2,MBTPS1,HSDL1,TAF1C,KCNG4,RNA5SP433,WFDC1,ATP2C2-AS1,COTL1,KLHL36,USP10,CRISPLD2,ZDHHC7,FAM92B,LINC02139,GINS2,EMC8,COX4I1,IRF8,PKD1L2,BCO1,CMIP,HSD17B2,SLC38A8,DNAAF1,ATP2C2,KIAA0513,GSE1,C16orf74,PLCG2,CDH13,LINC02176
celestino-soper_11_ASD_discovery_cases-11327
Solid phase hybridization (Illumina 1M SNP), qPCR
De novo
Simplex
NA
MIR4720,PPIAP51,MIR7854,MIR6504,RN7SKP176,MTCYBP28,RN7SKP190,MIR8058,RN7SL134P,MIR3182,HSBP1,RNA5SP432,ADAD2,COX6CP16,LINC00311,MIR5093,RN7SL381P,MIR1910,RNU1-103P,MIR6774,GAN,SDR42E1,MPHOSPH6,MLYCD,OSGIN1,NECAB2,MBTPS1,HSDL1,TAF1C,KCNG4,RNA5SP433,WFDC1,ATP2C2-AS1,COTL1,KLHL36,USP10,CRISPLD2,ZDHHC7,FAM92B,LINC02139,GINS2,EMC8,COX4I1,IRF8,PKD1L2,BCO1,CMIP,HSD17B2,SLC38A8,DNAAF1,ATP2C2,KIAA0513,GSE1,C16orf74,PLCG2,CDH13,LINC02176
kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00002485
FISH, qPCR, MLPA, aCGH, or standard G-banded chromosome analysis
Unknown
Unknown
Unknown
RN7SKP176,MTCYBP28,RN7SKP190,MIR8058,RN7SL134P,MIR3182,HSBP1,RNA5SP432,ADAD2,COX6CP16,LINC00311,MIR5093,RN7SL381P,SDR42E1,MPHOSPH6,MLYCD,OSGIN1,NECAB2,MBTPS1,HSDL1,TAF1C,KCNG4,RNA5SP433,WFDC1,ATP2C2-AS1,COTL1,KLHL36,USP10,CRISPLD2,ZDHHC7,FAM92B,LINC02139,GINS2,HSD17B2,SLC38A8,DNAAF1,ATP2C2,KIAA0513,GSE1,C16orf74,PLCG2,CDH13,LINC02176
krumm_15_ASD_discovery_cases-case11327.p1
Illumina 1M
De novo
Simplex
Segregated
MIR4720,PPIAP51,MIR7854,MIR6504,RN7SKP176,MTCYBP28,RN7SKP190,MIR8058,RN7SL134P,MIR3182,HSBP1,RNA5SP432,ADAD2,GAN,SDR42E1,MPHOSPH6,MLYCD,OSGIN1,NECAB2,MBTPS1,HSDL1,TAF1C,KCNG4,RNA5SP433,WFDC1,ATP2C2-AS1,COTL1,KLHL36,PKD1L2,BCO1,CMIP,HSD17B2,SLC38A8,DNAAF1,ATP2C2,PLCG2,CDH13
levy_11_ASD_discovery_cases-11327.p1
De novo
Simplex
Segregated
MIR4720,PPIAP51,MIR7854,MIR6504,RN7SKP176,MTCYBP28,RN7SKP190,MIR8058,RN7SL134P,MIR3182,HSBP1,RNA5SP432,ADAD2,COX6CP16,LINC00311,MIR5093,RN7SL381P,MIR1910,RNU1-103P,MIR6774,LINC02132,GAN,SDR42E1,MPHOSPH6,MLYCD,OSGIN1,NECAB2,MBTPS1,HSDL1,TAF1C,KCNG4,RNA5SP433,WFDC1,ATP2C2-AS1,COTL1,KLHL36,USP10,CRISPLD2,ZDHHC7,FAM92B,LINC02139,GINS2,EMC8,COX4I1,IRF8,PKD1L2,BCO1,CMIP,HSD17B2,SLC38A8,DNAAF1,ATP2C2,KIAA0513,GSE1,C16orf74,PLCG2,CDH13,LINC02176
sanders_11_ASD_discovery_cases-11327.p1
qPCR
De Novo
Simplex (quad-proband matched)
Segregated
MIR4720,PPIAP51,MIR7854,MIR6504,RN7SKP176,MTCYBP28,RN7SKP190,MIR8058,RN7SL134P,MIR3182,HSBP1,RNA5SP432,ADAD2,COX6CP16,LINC00311,MIR5093,RN7SL381P,MIR1910,RNU1-103P,MIR6774,LINC02132,GAN,SDR42E1,MPHOSPH6,MLYCD,OSGIN1,NECAB2,MBTPS1,HSDL1,TAF1C,KCNG4,RNA5SP433,WFDC1,ATP2C2-AS1,COTL1,KLHL36,USP10,CRISPLD2,ZDHHC7,FAM92B,LINC02139,GINS2,EMC8,COX4I1,IRF8,PKD1L2,BCO1,CMIP,HSD17B2,SLC38A8,DNAAF1,ATP2C2,KIAA0513,GSE1,C16orf74,PLCG2,CDH13,LINC02176
Controls
No Control Data Available
No Animal Model Data Available