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Homozygous loss-of-function variants in the GALNT2 gene were identified in seven individuals from four families presenting with a novel congenital disorder of O-linked glycosylation characterized by global developmental delay, intellectual disability with language deficit, autistic features, behavioral abnormalities, epilepsy, chronic insomnia, white matter changes on brain MRI, and dysmorphic features (Zilmer et al., 2020).

Molecular Function

This gene encodes a member of the glycosyltransferase 2 protein family that catalyzes the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor. Loss of function in GALNT2 has been shown to result in lower high-density lipoproteins in humans, nonhuman primates, and rodents (Khetarpal et al., 2016).

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Novel congenital disorder of O-linked glycosylation caused by GALNT2 loss of function
Congenital disorder of glycosylation, type IIt
DD, ID, autistic features, epilepsy/seizures
Support
Integrating de novo and inherited variants in 42
ASD
Support
Mutational Landscape of Autism Spectrum Disorder Brain Tissue
ASD
Support
Loss of Function of GALNT2 Lowers High-Density Lipoproteins in Humans, Nonhuman Primates, and Rodents
Support
Epilepsy/seizures
DD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1174R001a 
 stop_gained 
 c.865C>T 
 p.Gln289Ter 
 Familial 
 Both parents 
 Multiplex 
 GEN1174R002a 
 stop_gained 
 c.598C>T 
 p.Arg200Ter 
 Familial 
 Both parents 
 Simplex 
 GEN1174R003a 
 stop_gained 
 c.296dup 
 p.Tyr99Ter 
 Familial 
 Both parents 
 Multiplex 
 GEN1174R004a 
 missense_variant 
 c.629G>C 
 p.Arg210Pro 
 Familial 
 Both parents 
 Multiplex 
 GEN1174R005 
 synonymous_variant 
 c.285G>A 
 p.Gly95%3D 
 Unknown 
  
  
 GEN1174R006 
 missense_variant 
 c.569T>C 
 p.Ile190Thr 
 De novo 
  
  
 GEN1174R007 
 stop_gained 
 c.1135C>T 
 p.Arg379Ter 
 De novo 
  
  
 GEN1174R008 
 synonymous_variant 
 c.1521T>C 
 p.Leu507%3D 
 De novo 
  
  
 GEN1174R009 
 splice_site_variant 
 c.703+1G>T 
  
 Familial 
 Maternal 
 Multiplex 
 GEN1174R010a 
 missense_variant 
 c.623G>A 
 p.Arg208Gln 
 Familial 
 Both parents 
 Multiplex 
  et al.  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
1
Duplication
 44
 
1
Duplication
 1
 
1
Duplication
 1
 
1
Duplication
 2
 
1
Duplication
 1
 
1
Deletion-Duplication
 13
 
1
Deletion
 7
 
1
Deletion
 2
 

No Animal Model Data Available

 

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