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Relevance to Autism

Rare variants in the GALNT13 gene have been identified with autism (Bucan et al., 2009).

Molecular Function

The GALNT13 protein is a member of the UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase (GalNAcT; EC 2.4.1.41) family, which initiate O-linked glycosylation of mucins (see MUC3A, MIM 158371) by the initial transfer of N-acetylgalactosamine (GalNAc) with an alpha-linkage to a serine or threonine residue.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Genome-wide analyses of exonic copy number variants in a family-based study point to novel autism susceptibility genes.
ASD
Support
Refinement and discovery of new hotspots of copy-number variation associated with autism spectrum disorder.
ASD
Highly Cited
Cloning and characterization of a new human UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase, designated pp-GalNAc-...
Recent Recommendation
Calsenilin and CALP interact with the cytoplasmic tail of UDP-Gal:GA2/GM2/GD2 beta-1,3-galactosyltransferase.

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN102R001 
 copy_number_loss 
  
  
  
  
 Multiplex 
 GEN102R002 
 copy_number_loss 
  
  
  
  
 Multiplex 
 GEN102R003 
 copy_number_loss 
  
  
  
  
 Multiplex 
 GEN102R004 
 copy_number_loss 
  
  
  
  
 Multiplex 
 GEN102R005 
 copy_number_loss 
  
  
 Familial 
 Paternal 
 Simplex 
 GEN102R006 
 splice_site_variant 
 c.-176-2A>G 
  
 Familial 
 Paternal 
 Multiplex 
 GEN102R007 
 splice_site_variant 
 c.-176-2A>G 
  
 Familial 
 Maternal 
 Multiplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
2
Duplication
 1
 
2
Duplication
 1
 
2
Duplication
 1
 
2
Duplication
 1
 
2
Duplication
 1
 
2
Deletion
 7
 
2
Deletion
 1
 
2
Deletion-Duplication
 26
 
2
Deletion
 1
 
2
Deletion
 10
 
2
Deletion
 5
 
2
Deletion
 1
 
2
Deletion-Duplication
 16
 
2
Deletion
 3
 

No Animal Model Data Available


Interactor Symbol Interactor Name Interactor Organism Entrez ID Uniprot ID Interaction Type Evidence Reference
FMR1 fragile X mental retardation 1 2332 G8JLE9 PAR-CLIP
Ascano M Jr , et al. 2012
GALNT1 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1) 2589 Q05BM8 IP; LC-MS/MS
Huttlin EL , et al. 2015
LRRC3 Leucine-rich repeat-containing protein 3 81543 Q9BY71 IP; LC-MS/MS
Huttlin EL , et al. 2015

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