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Relevance to Autism

Rare variants in the GALNT13 gene have been identified with autism (Bucan et al., 2009).

Molecular Function

The GALNT13 protein is a member of the UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase (GalNAcT; EC 2.4.1.41) family, which initiate O-linked glycosylation of mucins (see MUC3A, MIM 158371) by the initial transfer of N-acetylgalactosamine (GalNAc) with an alpha-linkage to a serine or threonine residue.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Genome-wide analyses of exonic copy number variants in a family-based study point to novel autism susceptibility genes.
ASD
Support
Whole genome sequencing analysis identifies sex differences of familial pattern contributing to phenotypic diversity in autism
ASD
Support
Refinement and discovery of new hotspots of copy-number variation associated with autism spectrum disorder.
ASD
Highly Cited
Cloning and characterization of a new human UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase, designated pp-GalNAc-...
Recent Recommendation
Calsenilin and CALP interact with the cytoplasmic tail of UDP-Gal:GA2/GM2/GD2 beta-1,3-galactosyltransferase.

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN102R001 
 copy_number_loss 
  
  
  
  
 Multiplex 
 GEN102R002 
 copy_number_loss 
  
  
  
  
 Multiplex 
 GEN102R003 
 copy_number_loss 
  
  
  
  
 Multiplex 
 GEN102R004 
 copy_number_loss 
  
  
  
  
 Multiplex 
 GEN102R005 
 copy_number_loss 
  
  
 Familial 
 Paternal 
 Simplex 
 GEN102R006 
 splice_site_variant 
 c.-176-2A>G 
  
 Familial 
 Paternal 
 Multiplex 
 GEN102R007 
 splice_site_variant 
 c.-176-2A>G 
  
 Familial 
 Maternal 
 Multiplex 
 GEN102R008 
 synonymous_variant 
 c.42G>A 
 p.Ser14= 
 De novo 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
2
Duplication
 1
 
2
Duplication
 1
 
2
Duplication
 1
 
2
Duplication
 1
 
2
Duplication
 1
 
2
Deletion
 7
 
2
Deletion
 1
 
2
Deletion-Duplication
 28
 
2
Deletion
 1
 
2
Deletion
 10
 
2
Deletion
 5
 
2
Deletion
 1
 
2
Deletion-Duplication
 17
 
2
Deletion
 3
 

No Animal Model Data Available


Interactor Symbol Interactor Name Interactor Organism Entrez ID Uniprot ID Interaction Type Evidence Reference
FMR1 fragile X mental retardation 1 2332 G8JLE9 PAR-CLIP
Ascano M Jr , et al. 2012
GALNT1 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1) 2589 Q05BM8 IP; LC-MS/MS
Huttlin EL , et al. 2015
LRRC3 Leucine-rich repeat-containing protein 3 81543 Q9BY71 IP; LC-MS/MS
Huttlin EL , et al. 2015

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