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Relevance to Autism

A de novo missense variant in the DUSP15 gene that was predicted to be damaging was identified in an ASD proband in Neale et al., 2012; a second de novo missense variant in this gene that was predicted to be disease causing by MutationTaster was identified in an ASD proband of Chinese Han descent in Tian et al., 2016. An assocation study consisting of 255 children with ASD and 427 ethnically-matched healthy controls in Tian et al., 2016 also identified association of the DUSP15 intronic SNP rs37466599 with autism under allelic (P=0.0018), additive (P=0.001), and dominant (P=0.007) models.

Molecular Function

The protein encoded by this gene has both protein-tyrosine phophatase activity and serine/threonine-specific phosphatase activity, and therefore is known as a dual specificity phosphatase. This protein may function in the differentiation of oligodendrocytes.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Association of oligodendrocytes differentiation regulator gene DUSP15 with autism.
ASD
Positive Association
Association between Genetic Variants in DUSP15, CNTNAP2, and PCDHA Genes and Risk of Childhood Autism Spectrum Disorder
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Inherited and De Novo Genetic Risk for Autism Impacts Shared Networks.
ASD
Support
Hotspots of missense mutation identify neurodevelopmental disorder genes and functional domains.
ASD
Support
Patterns and rates of exonic de novo mutations in autism spectrum disorders.
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN836R001 
 missense_variant 
 c.320C>T 
 p.Thr107Met 
 De novo 
  
  
 GEN836R002 
 missense_variant 
 c.166G>A 
 p.Ala56Thr 
 De novo 
  
  
 GEN836R003 
 missense_variant 
 c.26G>A 
 p.Arg9Gln 
 Familial 
 Maternal 
  
 GEN836R004 
 missense_variant 
 c.7G>A 
 p.Val3Met 
 Familial 
 Maternal 
  
 GEN836R005 
 missense_variant 
 c.46A>G 
 p.Lys16Glu 
 Unknown 
  
  
 GEN836R006 
 frameshift_variant 
 c.386dup 
 p.Gly131ArgfsTer77 
 Familial 
 Maternal 
 Multiplex 
 GEN836R007 
 synonymous_variant 
 c.546C>T 
 p.Thr182%3D 
 De novo 
  
  
 GEN836R008 
 frameshift_variant 
 c.218_219del 
 p.Arg73ProfsTer134 
 Familial 
 Maternal 
 Multiplex 

Common

Variant ID
Polymorphism
SNP ID
Allele Change
Residue Change
Population Origin
Population Stage
Author, Year
 GEN836C001 
 intron_variant 
 rs3746599 
 c.628+19T>C 
  
 255 ASD children (233 male, 20 female; age range 2-16 years, mean age 6 years 2 months) and 427 healthy controls (229 male, 198 female); all subjects of Han Chinese descent and recruited in the Institute of Mental Health, Peking University and Peking University Sixth Hospital, China. 
 Discovery 
 GEN836C002 
 intron_variant 
 rs3746599 
 c.628+19T>C 
  
 201 children with ASD and 200 healthy controls; all subjects of Han Chinese descent 
 Replication 
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
20
Duplication
 1
 
20
Duplication
 1
 
20
Deletion-Duplication
 18
 
20
Duplication
 1
 

No Animal Model Data Available


Interactor Symbol Interactor Name Interactor Organism Entrez ID Uniprot ID Interaction Type Evidence Reference
PDGFRB platelet-derived growth factor receptor, beta polypeptide 5159 P09619 in vitro phosphatase assay; SPOT synthesis/peptide array
Schmidt F , et al. 2012
SNX6 sorting nexin 6 58533 Q9UNH7 in vitro phosphatase assay; SPOT synthesis/peptide array
Schmidt F , et al. 2012

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