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Relevance to Autism

Three de novo loss-of-function (LoF) variants in the DSCAM gene were identified in ASD probands from the Simons Simplex Collection in Iossifov et al., 2014 (PMID 25363768), while a fourth de novo LoF variant in this gene was identified in one ASD proband from 2,270 trios screened by the Autism Sequencing Consortium in De Rubeis et al., 2014 (PMID 25363760). Two additional de novo LoF variants were identified in Chinese ASD probands from the Autism Clinical and Genetic Resources in China (ACGC) cohort in Wang et al., 2016 (PMID 27824329). Transmission and de novo association (TADA) analyses in Sanders et al., 2015 and Satterstrom et al., 2020 identified DSCAM as a candidate gene with a false discovery rate (FDR) 0.01. An intronic SNP in the DSCAM gene was found to associate with ASD in a GWAS meta-analysis of 7387 ASD cases and 8567 controls with a P-value < 1.0E-04 (Autism Spectrum Disorders Working Group of The Psychiatric Genomics Consortium 2017). A two-stage analysis of rare de novo and inherited coding variants in 42,607 ASD cases, including 35,130 new cases from the SPARK cohort, in Zhou et al., 2022 identified DSCAM as a gene reaching study-wide significance based on 5,754 constraint genes (P < 8.69E-06).

Molecular Function

This gene is a member of the immunoglobulin superfamily of cell adhesion molecules (Ig-CAMs), and is involved in human central and peripheral nervous system development. This gene is a candidate for Down syndrome and congenital heart disease (DSCHD)

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Positive Association
Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with ...
ASD
Support
De novo genic mutations among a Chinese autism spectrum disorder cohort.
ASD
Support
Prevalence and phenotypic impact of rare potentially damaging variants in autism spectrum disorder
ASD
Support
Insights into Autism Spectrum Disorder Genomic Architecture and Biology from 71 Risk Loci.
ASD
Support
Large-scale targeted sequencing identifies risk genes for neurodevelopmental disorders
ASD, DD
ID
Support
Support
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD
Support
DD, ID
Learning disability
Support
Inherited and multiple de novo mutations in autism/developmental delay risk genes suggest a multifactorial model.
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Whole genome sequencing resource identifies 18 new candidate genes for autism spectrum disorder
ASD
Support
Migrating pyramidal neurons require DSCAM to bypass the border of the developing cortical plate
Support
Targeted sequencing identifies 91 neurodevelopmental-disorder risk genes with autism and developmental-disability biases.
DD
Support
DSCAM deficiency leads to premature spine maturation and autism-like behaviors
ASD
Recent Recommendation
Genome Sequencing of Autism-Affected Families Reveals Disruption of Putative Noncoding Regulatory DNA
ASD
Recent Recommendation
Low load for disruptive mutations in autism genes and their biased transmission.
ASD
Recent Recommendation
Dysfunction of NMDA receptors in neuronal models of an autism spectrum disorder patient with a DSCAM mutation and in Dscam-knockout mice
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN645R001 
 splice_site_variant 
 c.4132+2T>A 
  
 De novo 
  
 Simplex 
 GEN645R002 
 frameshift_variant 
 c.5653dup 
 p.Met1885AsnfsTer82 
 De novo 
  
 Simplex 
 GEN645R003 
 frameshift_variant 
 c.4020_4021insTA 
 p.Asn1341Ter 
 De novo 
  
 Simplex 
 GEN645R004 
 splice_site_variant 
 c.2356+2T>G 
  
 De novo 
  
  
 GEN645R005 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Simplex 
 GEN645R006 
 frameshift_variant 
 c.1067del 
 p.Pro356LeufsTer5 
 De novo 
  
  
 GEN645R007 
 stop_gained 
 c.4885C>T 
 p.Arg1629Ter 
 De novo 
  
  
 GEN645R008 
 missense_variant 
 c.4859G>A 
 p.Arg1620Gln 
 Familial 
 Maternal 
  
 GEN645R009 
 stop_gained 
 c.4420G>T 
 p.Glu1474Ter 
 Familial 
 Maternal 
  
 GEN645R010 
 missense_variant 
 c.596C>T 
 p.Thr199Met 
 Familial 
 Paternal 
  
 GEN645R011 
 missense_variant 
 c.4859G>A 
 p.Arg1620Gln 
 Unknown 
 Not maternal 
  
 GEN645R012 
 missense_variant 
 c.596C>T 
 p.Thr199Met 
 Unknown 
  
  
 GEN645R013 
 frameshift_variant 
 c.5653dup 
 p.Met1885AsnfsTer82 
 De novo 
  
  
 GEN645R014 
 frameshift_variant 
 c.4019_4020insTA 
 p.Asn1341ThrfsTer10 
 De novo 
  
  
 GEN645R015 
 frameshift_variant 
 c.1533_1537del 
 p.Lys511AsnfsTer24 
 Unknown 
  
 Multiplex 
 GEN645R016 
 splice_site_variant 
 c.5687-1G>A 
  
 Familial 
 Maternal 
 Simplex 
 GEN645R017 
 missense_variant 
 c.1163G>T 
 p.Arg388Leu 
 Familial 
 Paternal 
 Simplex 
 GEN645R018 
 missense_variant 
 c.4024G>A 
 p.Gly1342Arg 
 Familial 
 Maternal 
 Simplex 
 GEN645R019 
 missense_variant 
 c.3253G>A 
 p.Glu1085Lys 
 De novo 
  
 Simplex 
 GEN645R020 
 intron_variant 
 c.3696+50C>T 
  
 De novo 
  
 Simplex 
 GEN645R021 
 intron_variant 
 c.3563-12C>G 
  
 De novo 
  
 Simplex 
 GEN645R022 
 missense_variant 
 c.3737A>G 
 p.Tyr1246Cys 
 De novo 
  
  
 GEN645R023 
 missense_variant 
 c.2459G>A 
 p.Arg820His 
 De novo 
  
  
 GEN645R024 
 missense_variant 
 c.1400G>T 
 p.Ser467Ile 
 De novo 
  
  
 GEN645R025 
 missense_variant 
 c.1009G>A 
 p.Val337Met 
 Familial 
 Maternal 
  
 GEN645R026 
 missense_variant 
 c.700C>T 
 p.Arg234Cys 
 Familial 
 Maternal 
  
 GEN645R027 
 missense_variant 
 c.5174G>A 
 p.Arg1725Gln 
 Familial 
 Paternal 
  
 GEN645R028 
 missense_variant 
 c.5681G>A 
 p.Arg1894Gln 
 Familial 
 Maternal 
  
 GEN645R029 
 missense_variant 
 c.5681G>A 
 p.Arg1894Gln 
 Familial 
 Maternal 
  
 GEN645R030 
 missense_variant 
 c.5060C>T 
 p.Thr1687Met 
 Unknown 
  
 Simplex 
 GEN645R031 
 missense_variant 
 c.5017G>C 
 p.Asp1673His 
 Unknown 
  
  
 GEN645R032 
 missense_variant 
 c.5680C>G 
 p.Arg1894Gly 
 Unknown 
  
  
 GEN645R033 
 missense_variant 
 c.5543C>T 
 p.Thr1848Met 
 Unknown 
  
  
 GEN645R034 
 missense_variant 
 c.1288G>A 
 p.Val430Met 
 Unknown 
  
  
 GEN645R035 
 missense_variant 
 c.386G>A 
 p.Arg129His 
 Unknown 
  
  
 GEN645R036 
 missense_variant 
 c.4849C>T 
 p.Arg1617Trp 
 Unknown 
  
  
 GEN645R037 
 missense_variant 
 c.5102C>T 
 p.Thr1701Met 
 Unknown 
  
  
 GEN645R038 
 missense_variant 
 c.2695C>T 
 p.Arg899Cys 
 Unknown 
  
  
 GEN645R039 
 missense_variant 
 c.1903C>T 
 p.Arg635Trp 
 Unknown 
  
  
 GEN645R040 
 missense_variant 
 c.5114C>T 
 p.Thr1705Met 
 Unknown 
  
 Simplex 
 GEN645R041 
 missense_variant 
 c.3547C>T 
 p.Arg1183Trp 
 Unknown 
  
  
 GEN645R042 
 missense_variant 
 c.3121G>T 
 p.Asp1041Tyr 
 Unknown 
  
  
 GEN645R043 
 missense_variant 
 c.2624G>A 
 p.Arg875His 
 Unknown 
  
  
 GEN645R044 
 missense_variant 
 c.5387G>T 
 p.Arg1796Leu 
 Unknown 
  
  
 GEN645R045 
 missense_variant 
 c.928G>A 
 p.Val310Met 
 Unknown 
  
  
 GEN645R046 
 missense_variant 
 c.928G>A 
 p.Val310Met 
 Unknown 
  
  
 GEN645R047 
 missense_variant 
 c.928G>A 
 p.Val310Met 
 Unknown 
  
  
 GEN645R048 
 missense_variant 
 c.4694C>T 
 p.Thr1565Met 
 Unknown 
  
  
 GEN645R049 
 missense_variant 
 c.4694C>T 
 p.Thr1565Met 
 Unknown 
  
  
 GEN645R050 
 missense_variant 
 c.2458C>T 
 p.Arg820Cys 
 Unknown 
  
  
 GEN645R051 
 missense_variant 
 c.2458C>T 
 p.Arg820Cys 
 Unknown 
  
 Simplex 
 GEN645R052 
 missense_variant 
 c.5041C>T 
 p.Arg1681Cys 
 Unknown 
  
  
 GEN645R053 
 missense_variant 
 c.5041C>T 
 p.Arg1681Cys 
 Unknown 
  
  
 GEN645R054 
 missense_variant 
 c.5041C>T 
 p.Arg1681Cys 
 Unknown 
  
  
 GEN645R055 
 missense_variant 
 c.2089C>T 
 p.Arg697Trp 
 Unknown 
  
  
 GEN645R056 
 missense_variant 
 c.2089C>T 
 p.Arg697Trp 
 Unknown 
  
  
 GEN645R057 
 missense_variant 
 c.2089C>T 
 p.Arg697Trp 
 Unknown 
  
  
 GEN645R058 
 missense_variant 
 c.1162C>T 
 p.Arg388Cys 
 Unknown 
  
  
 GEN645R059 
 missense_variant 
 c.5174G>A 
 p.Arg1725Gln 
 Unknown 
  
  
 GEN645R060 
 missense_variant 
 c.4504G>A 
 p.Gly1502Ser 
 Unknown 
  
  
 GEN645R061 
 missense_variant 
 c.412G>A 
 p.Gly138Ser 
 Unknown 
  
  
 GEN645R062 
 missense_variant 
 c.5531C>T 
 p.Ser1844Leu 
 Unknown 
  
  
 GEN645R063 
 missense_variant 
 c.5681G>A 
 p.Arg1894Gln 
 Unknown 
  
  
 GEN645R064 
 missense_variant 
 c.2501G>A 
 p.Arg834His 
 Unknown 
  
  
 GEN645R065 
 missense_variant 
 c.2501G>A 
 p.Arg834His 
 Unknown 
  
  
 GEN645R066 
 frameshift_variant 
 c.5113_5114del 
 p.Thr1705GlyfsTer148 
 Unknown 
  
  
 GEN645R067 
 frameshift_variant 
 c.3375_3376del 
 p.Arg1125SerfsTer14 
 Unknown 
  
  
 GEN645R068 
 stop_gained 
 c.1504A>T 
 p.Arg502Ter 
 Unknown 
  
  
 GEN645R069 
 stop_gained 
 c.4420G>T 
 p.Glu1474Ter 
 Unknown 
  
  
 GEN645R070 
 stop_gained 
 c.4420G>T 
 p.Glu1474Ter 
 Unknown 
  
  
 GEN645R071 
 missense_variant 
 c.5060C>T 
 p.Thr1687Met 
 Unknown 
  
  
 GEN645R072 
 missense_variant 
 c.3130G>T 
 p.Gly1044Trp 
 Unknown 
  
  
 GEN645R073 
 missense_variant 
 c.5261G>A 
 p.Arg1754Gln 
 Unknown 
  
  
 GEN645R074 
 missense_variant 
 c.5261G>A 
 p.Arg1754Gln 
 Unknown 
  
  
 GEN645R075 
 missense_variant 
 c.4849C>T 
 p.Arg1617Trp 
 Unknown 
  
  
 GEN645R076 
 missense_variant 
 c.5102C>T 
 p.Thr1701Met 
 Unknown 
  
  
 GEN645R077 
 missense_variant 
 c.4943C>T 
 p.Thr1648Met 
 Unknown 
  
  
 GEN645R078 
 missense_variant 
 c.4474G>A 
 p.Val1492Met 
 Unknown 
  
  
 GEN645R079 
 missense_variant 
 c.5048C>T 
 p.Thr1683Met 
 Unknown 
  
  
 GEN645R080 
 missense_variant 
 c.4045G>A 
 p.Val1349Met 
 Unknown 
  
  
 GEN645R081 
 missense_variant 
 c.3511G>A 
 p.Ala1171Thr 
 Unknown 
  
  
 GEN645R082 
 missense_variant 
 c.598C>T 
 p.Arg200Trp 
 Unknown 
  
  
 GEN645R083 
 missense_variant 
 c.587G>A 
 p.Arg196His 
 Unknown 
  
  
 GEN645R084 
 missense_variant 
 c.5387G>T 
 p.Arg1796Leu 
 Unknown 
  
  
 GEN645R085 
 missense_variant 
 c.5387G>T 
 p.Arg1796Leu 
 Unknown 
  
  
 GEN645R086 
 missense_variant 
 c.4694C>T 
 p.Thr1565Met 
 Unknown 
  
  
 GEN645R087 
 missense_variant 
 c.4645C>T 
 p.Arg1549Trp 
 Unknown 
  
  
 GEN645R088 
 missense_variant 
 c.4645C>T 
 p.Arg1549Trp 
 Unknown 
  
  
 GEN645R089 
 missense_variant 
 c.4645C>T 
 p.Arg1549Trp 
 Unknown 
  
  
 GEN645R090 
 missense_variant 
 c.1162C>T 
 p.Arg388Cys 
 Unknown 
  
  
 GEN645R091 
 missense_variant 
 c.1162C>T 
 p.Arg388Cys 
 Unknown 
  
  
 GEN645R092 
 missense_variant 
 c.4970G>A 
 p.Arg1657Gln 
 Unknown 
  
  
 GEN645R093 
 missense_variant 
 c.2501G>A 
 p.Arg834His 
 Unknown 
  
  
 GEN645R094 
 splice_site_variant 
 c.1387G>A 
 p.Gly463Arg 
 Familial 
 Paternal 
  
 GEN645R095 
 splice_site_variant 
 n.813+1G>A 
 p.? 
 Unknown 
  
  
 GEN645R096 
 frameshift_variant 
 c.2051del 
 p.Leu684Ter 
 De novo 
  
 Simplex 
 GEN645R097 
 stop_gained 
 c.4744C>T 
 p.Gln1582Ter 
 Unknown 
  
  
 GEN645R098 
 synonymous_variant 
 c.2511G>A 
 p.Val837%3D 
 De novo 
  
 Simplex 
 GEN645R099 
 splice_site_variant 
 c.4919+1G>T 
  
 De novo 
  
  
 GEN645R100 
 missense_variant 
 c.2386A>G 
 p.Thr796Ala 
 De novo 
  
  
 GEN645R101 
 missense_variant 
 c.4216G>A 
 p.Gly1406Ser 
 De novo 
  
  

Common

Variant ID
Polymorphism
SNP ID
Allele Change
Residue Change
Population Origin
Population Stage
Author, Year
 GEN645C001 
 intron_variant 
 rs62235658 
 c.3851-2266A>G;c.3143-2266A>G 
  
 7387 ASD cases and 8567 controls from Autism Center of Excellence Network (ACE), Autism Genetic Resource Exchange (AGRE), Autism Genome Project (AGP), Finnish Case-Control ASD Collection, NIMH Repository and Montreal/Boston (MonBos) Collection, Population-Based Autism Genetics and Environment Study (PAGES), Simons Simplex Collection (SSC), and Weiss Laboratory Autism Collection 
 Discovery 
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
21
Duplication
 3
 
21
Duplication
 11
 
21
Duplication
 2
 
21
Deletion-Duplication
 1
 
21
Duplication
 4
 
21
Deletion
 2
 
21
Deletion
 3
 
21
Deletion
 3
 
21
Deletion-Duplication
 8
 
21
Deletion
 5
 
21
Deletion-Duplication
 43
 

Model Summary

Truncation of the Dscam gene product leads to severe hydrocephalus, decreased motor function and learning ability.

References

Type
Title
Author, Year
Additonal
DSCAM deficiency causes loss of pre-inspiratory neuron synchroneity and perinatal death.
Additional
DSCAM and DSCAML1 function in self-avoidance in multiple cell types in the developing mouse retina.
Additional
Dscam mutation leads to hydrocephalus and decreased motor function.
Primary
DSCAM contributes to dendrite arborization and spine formation in the developing cerebral cortex.
Additional
DSCAM promotes axon fasciculation and growth in the developing optic pathway.
Additional
DSCAM deficiency leads to premature spine maturation and autism-like behaviors

M_DSCAM_7_KO_HM_HYBRID

Model Type: Genetic
Model Genotype: Homozygous
Mutation: Mice with a targeted deletion of exon1 of Dscam generated by crossing transgenic mice with a floxed Dscam exon1 and a neomycin phosphotrasferase selector to CAG-Cre deleter mice, to achieve knockout in widespread cells in the offspring including developing embryos. Homozygotes were generated by crosing heterozygotes.
Allele Type: Targeted
Strain of Origin: 129SVJ
Genetic Background: C57BL/6*BALB/c
ES Cell Line: 129SVJ-derived
Mutant ES Cell Line: 129SVJ-derived
Model Source:

M_DSCAM_7_KO_HM_PURE

Model Type: Genetic
Model Genotype: Homozygous
Mutation: Mice with a targeted deletion of exon1 of Dscam generated by crossing transgenic mice with a floxed Dscam exon1 and a neomycin phosphotrasferase selector to CAG-Cre deleter mice, to achieve knockout in widespread cells in the offspring including developing embryos. Homozygotes were generated by crosing heterozygotes.
Allele Type: Targeted
Strain of Origin: 129SVJ
Genetic Background: C57BL/6
ES Cell Line: 129SVJ-derived
Mutant ES Cell Line: 129SVJ-derived
Model Source:

M_DSCAM_8_KO_HT_HYBRID

Model Type: Genetic
Model Genotype: Heterozygous
Mutation: Mice with a targeted deletion of exon1 of Dscam generated by crossing transgenic mice with a floxed Dscam exon1 to CAG-Cre deleter mice and a neomycin phosphotrasferase selector, to achieve knockout in widespread cells in the offspring including developing embryos. Exon 1 of Dscam contains the 5'UTR, the first Met, and the N-terminal signaling sequence.
Allele Type: Targeted
Strain of Origin: 129SVJ
Genetic Background: C57BL/6*BALB/c
ES Cell Line: 129SVJ-derived
Mutant ES Cell Line: 129SVJ-derived
Model Source:

M_DSCAM_8_KO_HT_PURE

Model Type: Genetic
Model Genotype: Heterozygous
Mutation: Mice with a targeted deletion of exon1 of Dscam generated by crossing transgenic mice with a floxed Dscam exon1 to CAG-Cre deleter mice and a neomycin phosphotrasferase selector, to achieve knockout in widespread cells in the offspring including developing embryos. Exon 1 of Dscam contains the 5'UTR, the first Met, and the N-terminal signaling sequence.
Allele Type: Targeted
Strain of Origin: 129SVJ
Genetic Background: C57BL/6
ES Cell Line: 129SVJ-derived
Mutant ES Cell Line: 129SVJ-derived
Model Source:

M_DSCAM_3_KO_HM

Model Type: Genetic
Model Genotype: Homozygous
Mutation: Dscam mutant mice harbor a homozygous 38 bp frameshift spontaneous deletion in exon17 of the Dscam gene that results in a truncated protein at the second FNIII domain and carry the Mito-Y transgene that labels neuronal mitochondria (PMID 19945391) and.
Allele Type: Targeted
Strain of Origin: C57BL/6
Genetic Background: C57/BALB
ES Cell Line: Not specified
Mutant ES Cell Line: Not specified
Model Source: Jackson Laboratory (Bar Harbor, ME)

M_DSCAM_3_KO_HM_DSCAML1-GT

Model Type: Genetic
Model Genotype: Homozygous
Mutation: Double mutant transgenic mice carrying the Mito-Y transgene that labels neuronal mitochondria, harboring a homozygous 38 bp frameshift deletion in exon 17 of the Dscam gene that results in a truncated protein at the second FNIII domain and carrying a homozygous genetrap mutation in the Dscaml1 gene.
Allele Type: Targeted
Strain of Origin: C57BL/6
Genetic Background: C57/BALB
ES Cell Line: Not specified
Mutant ES Cell Line: Not specified
Model Source: Jackson Laboratory (Bar Harbor, ME)

M_DSCAM_3_KO_HT

Model Type: Genetic
Model Genotype: Heterozygous
Mutation: Dscam mutant mice carry the Mito-Y transgene that labels neuronal mitochondria (PMID 19945391) and harbor a heterozygous 38 bp frameshift spontaneous deletion in exon 17 of the Dscam gene that results in a truncated protein at the second FNIII domain.
Allele Type: Targeted
Strain of Origin: C57BL/6
Genetic Background: C57/BALB
ES Cell Line: Not specified
Mutant ES Cell Line: Not specified
Model Source: Jackson Laboratory (Bar Harbor, ME)

M_DSCAM_1_SP-DEL17_HM

Model Type: Genetic
Model Genotype: Homozygous
Mutation: The original Dscam mutation in these mice was a spontaneous mutation, arising in Balb/cJ mice. It is a 38 bp deletion in exon 17 of Dscam and was identified using linkage in F2 mice with polymorphic markers and positional cloning. The deletion results in a loss-of-function allele of Dscam, caused by a frame shift resulting in a premature stop codon.
Allele Type: Spontaneous mutation
Strain of Origin: BALB/cByJ
Genetic Background: DBA/2* others
ES Cell Line:
Mutant ES Cell Line:
Model Source: JAX

M_DSCAM_2_SP-DEL17_HM_THY1-YFP

Model Type: Genetic
Model Genotype: Homozygous
Mutation: The Dscam del17 mice in the DBA/2 background were crossed with mice expressing YFP in layer V pyramidal neurons of the motor and somatosensory cortex.
Allele Type: Transgenic (marker) B6*DBA/2
Strain of Origin:
Genetic Background:
ES Cell Line:
Mutant ES Cell Line:
Model Source: JAX

M_DSCAM_5_SP_HM

Model Type: Genetic
Model Genotype: Homozygous
Mutation: Mice harboring a spontaneous homozygous Dscam allele with a four base pair duplication in exon 19, leading to a frameshift and truncation of the open reading frame.
Allele Type: Targeted
Strain of Origin: C3H*HeDiSn
Genetic Background: C3H*HeDiSn
ES Cell Line: Not specified
Mutant ES Cell Line: Not specified
Model Source: Not specified

M_DSCAM_6_TG

Model Type: Genetic
Model Genotype: Homozygous
Mutation: Dscam gain of function mice express a dual fluorescent Cre reporter and conditional Dscam gain-of-function transgene, expressing red fluorescence in widespread cells/tissues prior to Cre recombinase exposure, with Down syndrome cell adhesion molecule overexpression and green fluorescence in Cre recombinase expressing cells. Dscam gain-of-function mice over-express the floxed Dscam transgene and GFP reporter in retinal neurons and Muller glia in the lateral retina and a subset of amacrine cells in a dorsoventral wedge under the Pax6-Cre mice driver.
Allele Type: Targeted
Strain of Origin: Not specified
Genetic Background: Not specified
ES Cell Line: Not specified
Mutant ES Cell Line: Not specified
Model Source: Jackson Laboratory (Bar Harbor, ME). Stock number: 025543.

M_DSCAM_10_CKO_HM

Model Type: Genetic
Model Genotype: Homozygous
Mutation: The first loxp was inserted between exon 1 and 2. The second loxp was inserted after the last exon (exon 33). Crossed to NEX-cre mice for knockout in in pyramidal neurons of the neocortex and hippocampus.
Allele Type: conditional knockout
Strain of Origin:
Genetic Background: C57Bl/6
ES Cell Line:
Mutant ES Cell Line:
Model Source: Yu-Qiang Ding

M_DSCAM_9_CKO_HM

Model Type: Genetic
Model Genotype: Homozygous
Mutation: The first loxp was inserted between exon 1 and 2. The second loxp was inserted after the last exon (exon 33). Crossed to GFAP-cre transgenic mice (JAX) for neural progenitor cells E13.5 knockout in forebrain neurons and astrocytes.
Allele Type: conditional knockout
Strain of Origin:
Genetic Background: C57Bl/6
ES Cell Line:
Mutant ES Cell Line:
Model Source: Jane Y. Wu

M_DSCAM_7_KO_HM_HYBRID

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Jerky movement1
Increased
Description: Mutants show occasional jerky movements compared to controls.
Exp Paradigm: NA
 General observations
 NA
Neuronal activation1
Abnormal
Description: Mutants show irregular and slow c4 ventral root recordings including increased frequency of low-amplitude c4 activities representing apnea, compared to controls. phenotypes are milder than in pure c57bl/6 background. ventilatory response to hypercapnia is not apparent, compared to controls. mutants retain neuronal activity in the pre-i respiratory rhythm generation center, as in controls.
Exp Paradigm: Respiration related neuronal activation corresponding to the inspiration rhythm was monitored at the c4/c5 ventral root, synchronous with phrenic nerve discharge and contraction of the diaphragm and inspiratory intercostal muscles in medulla-spinal cord preparations. measurements were made through a glass capillary suction electrode and a high-pass filter with a 0.3 s time constant. mean burst activity over a period of 35 min was calculated. optical recordings of respiratory neuron activity was done using a voltage-sensitive dye.
 C4/c5 ventral root respiratory activity recording
 E19, p0
Respiratory function1
Decreased
Description: Mutants show irregular respiration, frequent apneic episodes, and no change in ventilatory response (measured in respiratory frequency) to hypercapnia compared to controls. severity is milder than in mice on pure c57bl/6 genetic background. mutants died upon continuous exposure to hypercapnia, compared to controls, with decreased respiratory amplitude.
Exp Paradigm: Co2 response was examined by replacing the airflow through the plethysmograph with 8% co2/92% o2 for 2 min. respiratory frequency, tidal volume, minute volume, and respiratory depth were calculated for 50 70 respiratory cycles during rest.
 Whole body plethysmography
 P0
Targeted expression1
Decreased
Description: Mutants show an absence of dscam transcript in the extracellular, transmembrane and cytoplasmic fractions of the brain, compared to controls.
Exp Paradigm: Southern blot
 Southern blot
 P0
Targeted expression1
Decreased
Description: Mutants show an absence of dscam transcript in the extracellular, transmembrane and cytoplasmic fractions of the brain, compared to controls.
Exp Paradigm: Northern blot
 Northern blot
 P0
Cardiovascular development and function1
 No change
 Heart rate measurement
 Unreported
Mortality/lethality1
 No change
 General observations
 Adult
Mortality/lethality: embryonic1
 No change
 Genotypic ratio of progeny from heterozygous parents
 P0
Mortality/lethality: neonatal1
 No change
 General observations
 P0-p2
Size/growth1
 No change
 Body weight measurement
 P0
Nursing/lactation1
 No change
 General observations
 P0-p2
Cortical thickness1
 No change
 Histology
 E19
 Not Reported: Circadian sleep/wake cycle, Communications, Emotion, Immune response, Learning & memory, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior

M_DSCAM_7_KO_HM_PURE

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Brain size1
Increased
Description: Mutants show increased size of the medulla, including the inferior olive, although the size of the cerebrum is not changed, compared to controls.
Exp Paradigm: Measurements were made on ventral view images.
 Histology
 E19
Neuronal number1
Increased
Description: Mutants show increased number of neurons and neurofilaments in the medulla, compared to controls. cell density remained the same as medullary volume was increased in mutants.
Exp Paradigm: Cell counts were made on serial coronal sections. smi311 is a pan-neuronal nonphosphorylated neurofilament marker.
 Immunohistochemistry
 E19
Neuronal activation1
Abnormal
Description: Mutants show irregular and slow c4 ventral root recordings including continuous low-amplitude c4 activities representing apnea, compared to controls. mutants show intact neuronal activity of the respiratory rhythm generator, insp (pre-botzinger complex containing inspiratory neurons) during the inspiratory phase, compared to controls. mutants show weak synchronous insp neuronal activities and the neurons showing synchronous pre-i neuronal activities were not observed in pfrg (parafacial respiratory group), compared to controls. mutants show tonic facial nerve activity with no synchronicity to c4 activity whereas wildtype controls show regular and phasic facial nerve activity approximately synchronized with c4 inspiratory activity.
Exp Paradigm: Respiration related neuronal activation corresponding to the inspiration rhythm was monitored at the c4/c5 ventral root, synchronous with phrenic nerve discharge and contraction of the diaphragm and inspiratory intercostal muscles in medulla-spinal cord preparations. measurements were made through a glass capillary suction electrode and a high-pass filter with a 0.3 s time constant. mean burst activity over a period of 35 min was calculated. frequency of apnea was defined as lack of large c4 inspiratory activities for greater than 15 s. for optical imaging of respiratory neuron activity the brainstem preparation was stained with di-2-anepeq voltage sensitive dye for 30 min.
 C4/c5 ventral root respiratory activity recording
 E19, p0
Membrane potential1
Decreased
Description: Mutants showed absence of membrane potential trajectory of the pre-i neuron activity in the pfrg respiratory rhythm generator during the pre-inspiratory phase compared to controls.
Exp Paradigm: Membrane potentials of inspiratory neurons in the rostral ventrolateral medulla were recorded using conventional whole-cell patch-clamp methods. membrane potentials were recorded with a current- and voltage-clamp amplifier after compensation of the series resistance and capacitance.
 Whole-cell patch clamp
 E19, p0
Respiratory function1
Decreased
Description: Mutants show irregular respiration, frequent apneic episodes, and lower ventilatory response (measured in respiratory frequency) to hypercapnia compared to controls. mutants died upon continuous exposure to hypercapnia, compared to controls, with decreased respiratory amplitude.
Exp Paradigm: Co2 response was examined by replacing the airflow through the plethysmograph with 8% co2/92% o2 for 2 min. respiratory frequency, tidal volume, minute volume, and respiratory depth were calculated for 50 70 respiratory cycles during rest.
 Whole body plethysmography
 P0
Mortality/lethality: neonatal1
Increased
Description: Mutants died within 24 hours of birth and rarely survived to 48hrs, compared to controls.
Exp Paradigm: NA
 General observations
 P0-p2
Cardiovascular development and function1
 No change
 Heart rate measurement
 Unreported
Mortality/lethality: embryonic1
 No change
 Genotypic ratio of progeny from heterozygous parents
 P0
Brain morphology1
 No change
 Histology
 E19
 Not Reported: Circadian sleep/wake cycle, Communications, Emotion, Immune response, Learning & memory, Maternal behavior, Molecular profile, Motor phenotype, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior

M_DSCAM_8_KO_HT_HYBRID

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Neuronal activation1
Abnormal
Description: Mutants show irregular c4 ventral root recordings compared to controls. ventilatory response to hypercapnia is not apparent, compared to controls.
Exp Paradigm: Respiration related neuronal activation corresponding to the inspiration rhythm was monitored at the c4/c5 ventral root, synchronous with phrenic nerve discharge and contraction of the diaphragm and inspiratory intercostal muscles. measurements were made through a glass capillary suction electrode and a high-pass filter with a 0.3 s time constant. mean burst activity over a period of 35 min was calculated. optical recordings of respiratory neuron activity was done using a voltage-sensitive dye.
 C4/c5 ventral root respiratory activity recording
 E19, p0
Respiratory function1
Decreased
Description: Heterozygous mutants show mild to moderate abnormality in respiration compared to controls. heterozygous mutants show increased expiration in the ventilatory response to hypercapnia compared to wildtype controls.
Exp Paradigm: NA
 Whole body plethysmography
 P0
Maternal nurturing1
Abnormal
Description: Heterozygous mutant mothers delivered later than control mothers. delayed birth led mothers to kill pups. pups of delayed birth were therefore delivered by caesarean section and the mother sacrificed at birth.
Exp Paradigm: NA
 General observations
 P0
Targeted expression1
Decreased
Description: Mutants show decreased dscam transcript in the extracellular, transmembrane and cytoplasmic fractions, compared to controls.
Exp Paradigm: Northern blot
 Northern blot
 P0
Targeted expression1
Decreased
Description: Mutants show decreased dscam transcript in the extracellular, transmembrane and cytoplasmic fractions, compared to controls.
Exp Paradigm: Southern blot
 Southern blot
 P0
Cardiovascular development and function1
 No change
 Heart rate measurement
 Unreported
Developmental trajectory1
 No change
 General observations
 Unreported
General characteristics1
 No change
 General observations
 NA
Mortality/lethality1
 No change
 General observations
 Adult
Mortality/lethality: embryonic1
 No change
 Genotypic ratio of progeny from heterozygous parents
 P0
Reproductive function1
 No change
 General observations
 Unreported
 Not Reported: Circadian sleep/wake cycle, Communications, Emotion, Immune response, Learning & memory, Motor phenotype, Neuroanatomy / ultrastructure / cytoarchitecture, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior

M_DSCAM_8_KO_HT_PURE

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Membrane potential1
Decreased
Description: Mutants showed decreased membrane potential trajectory of the pre-i neuron activity in the pfrg respiratory rhythm generator during the pre-inspiratory phase compared to controls. mutants show intact insp (pre-botzinger complex containing inspiratory neuronal activities) during the inspiratory phase, compared to controls.
Exp Paradigm: Membrane potentials of inspiratory neurons in the rostral ventrolateral medulla were recorded using conventional whole-cell patch-clamp methods.-whole-cell patch clamp
 Whole-cell patch clamp
 NA
Membrane potential1
Decreased
Description: Mutants showed decreased membrane potential trajectory of the pre-i neuron activity in the pfrg respiratory rhythm generator during the pre-inspiratory phase compared to controls. mutants show intact insp (pre-botzinger complex containing inspiratory neuronal activities) during the inspiratory phase, compared to controls.
Exp Paradigm: Membrane potentials of inspiratory neurons in the rostral ventrolateral medulla were recorded using conventional whole-cell patch-clamp methods.- histology
 Histology
 NA
Neuronal activation1
Abnormal
Description: Mutants show irregular and slow c4 ventral root recordings compared to controls.
Exp Paradigm: Respiration related neuronal activation corresponding to the inspiration rhythm was monitored at the c4/c5 ventral root, synchronous with phrenic nerve discharge and contraction of the diaphragm and inspiratory intercostal muscles. measurements were made through a glass capillary suction electrode and a high-pass filter with a 0.3 s time constant. mean burst activity over a period of 35 min was calculated. optical recordings of respiratory neuron activity was done using a voltage-sensitive dye.
 C4/c5 ventral root respiratory activity recording
 E19, p0
Respiratory function1
Decreased
Description: Mutants show irregular respiration, frequent apneic episodes, and increased expiration in ventilatory response to hypercapnia compared to controls.
Exp Paradigm: Co2 response was examined by replacing the airflow through the plethysmograph with 8% co2/92% o2 for 2 min. respiratory frequency, tidal volume, minute volume, and respiratory depth were calculated for 50 70 respiratory cycles during rest.
 Whole body plethysmography
 P0
Cardiovascular development and function1
 No change
 Heart rate measurement
 Unreported
 Not Reported: Circadian sleep/wake cycle, Communications, Emotion, Immune response, Learning & memory, Maternal behavior, Molecular profile, Motor phenotype, Neuroanatomy / ultrastructure / cytoarchitecture, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior

M_DSCAM_3_KO_HM

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Motor coordination and balance2
Decreased
Description: Mutants show reduced motor coordination and balance compared to controls.
Exp Paradigm: Duration of running time and speed of rotarod at the time of fall are measured.
 Accelerating rotarod test
 Unreported
General locomotor activity: ambulatory activity2
Abnormal
Description: Mutants show abnormal walking behavior compared to controls.
Exp Paradigm: Walking behavior is assessed
 General observations
 2 months.
Gait2
Abnormal
Description: Mutants show abnormal gait by walking on their toes with tetanic hind limbs bent back and down-curved tails, compared to controls.
Exp Paradigm: Gait is assessed by observation of paw placement and body posture during locomotion.
 Gait
 2 months.
Motor learning2
Decreased
Description: Mutant mice show reduced motor learning compared to controls.
Exp Paradigm: Duration of running time between the first and eighth trials were compared.
 Accelerating rotarod test
 Unreported
Dendritic architecture: dendritic tree complexity3
Decreased
Description: Mutants show decreased complexity and numbers of filopodia in retinal ganglion cells growth cones in the optic tract compared to controls.
Exp Paradigm: NA
 Histology
 E14.5
Morphology and size of the optic tract3
Increased
Description: Mutants show an increase in the size and number of retinal ganglion cell axon bundles in the ipsilateral and contralateral optic tracts from the eye to the optic chiasma compared to controls.
Exp Paradigm: Anterograde dii labeling was used to label ipsilateral axonal tracts.
 Histology
 E13.5, e15.5, e17.5
Dendritic architecture: dendritic length1
Decreased
Description: Mutants show decreased length of dendrites in the bipolar rod cells compared to controls.
Exp Paradigm: NA
 Immunohistochemistry
 Not specified
Size of cerebral ventricles: lateral ventricle2
Increased
Description: Mutants show increase in lateral ventricular size compared to controls.
Exp Paradigm: Ventricular volume and ratio of ventricular size to brain volume was measured after crystal violet staining.
 Histology
 Unreported
Morphology and size of the corpus callosum2
Decreased
Description: Mutants show decreased thickness of the corpus callossum and commissural fibers at different rostrocaudal levels compared to controls.
Exp Paradigm: Sections at different positions along the rostrocaudal axis were measured: at the cingulate/retrosplenial regions, at the motor cortex and at the sensory cortex.
 Histology
 Unreported
Cortical thickness2
Decreased
Description: Mutants show decreased thickness of the cortical mantle and stretched internal capsule fibers at different rostrocaudal levels compared to controls.
Exp Paradigm: Sections at different positions along the rostrocaudal axis were measured: at the cingulate/retrosplenial regions, at the motor cortex and at the sensory cortex.
 Histology
 Unreported
Olfactory bulb morphology2
Decreased
Description: Mutants show decrease in the size of the olfactory bulb compared to controls.
Exp Paradigm: NA
 Gross necroscopy
 Unreported
Dendritic architecture: dendritic tree complexity1
Abnormal
Description: Mutants show disruption in dendritic arborization in all three classes of retinal gangion cells, compared to controls.
Exp Paradigm: NA
 Immunohistochemistry
 6 weeks
Morphology and size of the optic tract: thalamic extension3
Decreased
Description: Mutants show a decrease in the number of axons extending from the optic chiasma to the dorsal thalamus, a decrease in the length of the tract and a decrease in the number of retinal ganglion cell axons in the tract, compared to controls. the number of rgc axons in the ipsilateral dorsal thalamus was decreased but not affected in the contralateral dorsal thalamus until e16.5. mutants show normal ssea-1 positive neurons posterior to the chiasm and the rc-2 positive radial glial cells compared to controls.
Exp Paradigm: Dii labeling was used to label thalamic projections from the optic chiasma toward the thalamus. retrograde labeling was used to detect the number of rgcs reaching the thalamus.
 Histology
 E13.5-17.5
Electroretinogram (erg): b wave1
Decreased
Description: Mutant shows decreased b wave in the erg recording compared to wildtype.
Exp Paradigm: Recorded from the corneal surface of one eye after pupil dilation.
 Electroretinogram (erg)
 7-8 weeks
Morphology of the retina: rod bipolar cells1
Abnormal
Description: Mutant rod bipolar cells show varicosities in the axons, unlike controls.
Exp Paradigm: Chx10 antibody was used to label rod bipolar cells.
 Histology
 Not specified
Morphology of the retina: inner nuclear layer organization1
Increased
Description: Mutants show expanded nuclear plexiform layers of the retinas compared to wildtype.
Exp Paradigm: NA
 Histology
 Not specified
Morphology of the retina: retinal ganglion layer organization1
Abnormal
Description: Mutants show aggregation of bright m1 iprgcs and dim m2 iprgcs in the retina compared to controls.
Exp Paradigm: Melanopsin was used to detect intrinsically photoresponsive ganglion cells
 Histology
 Not specified
Morphology of the retina: inner nuclear layer organization1
Abnormal
Description: Mutants show disorganized inner nuclear layers of the retinas compared to wildtype.
Exp Paradigm: NA
 Histology
 Not specified
Retinal organization1
Abnormal
Description: Mutant mito-y positive retinal ganglion cells aggregate and fasciculate in the retina losing their normal mosaic pattern in the retinal ganglion layer, unlike those in controls. mutant retinal ganglion cells show no change in cell specification or cell-type identity compared to controls.
Exp Paradigm: NA
 NA
 Not specified
Morphology of the retina: plexiform layer morphology1
Increased
Description: Mutants show expanded inner plexiform layers of the retinas compared to wildtype.
Exp Paradigm: NA
 Histology
 Not specified
Morphology of retina: dopaminergic neurons1
Abnormal
Description: Mutants show cofasciculation of dopaminergic cell neurites and m1 iprgc dendrites, unlike controls.
Exp Paradigm: Tyrosine hydroxylase was used to detect dopaminergic neurons.
 Histology
 Not specified
Neuronal number: retinal ganglion cells3
Increased
Description: Mutants show increase in the number of retinal ganglion cells in the retina compared to controls.
Exp Paradigm: Brn3a was used to detect retinal ganglion cells.
 Histology
 E14.5-15.5
Morphology of the retina: plexiform layer morphology1
Abnormal
Description: Mutants show disorganized inner plexiform layers of the retinas compared to wildtype.
Exp Paradigm: NA
 Histology
 Not specified
Size/growth2
Decreased
Description: Mutants show reduced body size compared to controls.
Exp Paradigm: Body size is estimated.
 General observations
 3 weeks
Developmental trajectory2
Abnormal
Description: Mutants show developmental delay compared to controls.
Exp Paradigm: Dome-shaped head, small ears, closed eyes and ability to walk are qualitatively assessed.
 Developmental milestone measurements
 3 weeks
Cell proliferation3
Increased
Description: Mutants show an increase in the number of retinal ganglion cells compared to controls.
Exp Paradigm: Phospho-histone-h3 was used to detect mitotic cells in the retinal ganglion layer and neuroblastic layer.
 Histology
 E14.5-15.5
Size/growth2
 No change
 General observations
 2 months
Signaling1
 No change
 Immunohistochemistry
 Not specified
Brain development3
 No change
 Histology
 E13.5-17.5
Brain size2
 No change
 Gross necroscopy
 Unreported
Electroretinogram (erg): a wave1
 No change
 Electroretinogram (erg)
 7-8 weeks
Apoptosis3
 No change
 Histology
 E14.5-15.5
Morphology of the retina3
 No change
 Histology
 E15.5
Morphology of the retina: plexiform layer morphology1
 No change
 Histology
 Not specified
 Not Reported: Circadian sleep/wake cycle, Communications, Developmental profile, Emotion, Immune response, Learning & memory, Maternal behavior, Molecular profile, Motor phenotype, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior

M_DSCAM_3_KO_HM_DSCAML1-GT

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Morphology of the retina1
Abnormal
Description: Mutants show abnormal retinal fasciculation compared to controls. in mutants iprgc dendrites are fasciculated in the on portion of the ipl, while dopaminergic amacrine neurites are fasciculated in the off portion of the ipl proximal to the inl and colamination is highly disorganized.
Exp Paradigm: Melanopsin was used to detect intrinsically photoresponsive ganglion cells. th was used to detect dopaminergic cells.
 Histology
 Not specified
 Not Reported: Circadian sleep/wake cycle, Communications, Developmental profile, Emotion, Immune response, Learning & memory, Maternal behavior, Molecular profile, Motor phenotype, Neuroanatomy / ultrastructure / cytoarchitecture, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Social behavior

M_DSCAM_3_KO_HT

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Motor coordination and balance2
Decreased
Description: Mutants show reduced motor coordination and balance compared to controls.
Exp Paradigm: Duration of running time and speed of rotarod at the time of fall are measured.
 Accelerating rotarod test
 Unreported
Morphology and size of the optic tract3
Increased
Description: Mutants show an increase in the size and number of retinal ganglion cell axon bundles in the ipsilateral and contralateral optic tracts from the eye to the optic chiasma compared to controls.
Exp Paradigm: Anterograde dii labeling was used to label ipsilateral axonal tracts.
 Histology
 E13.5, e15.5, e17.5
Morphology and size of the optic tract: thalamic extension3
Decreased
Description: Mutants show a decrease in the number of axons extending from the optic chiasma to the dorsal thalamus, compared to controls.
Exp Paradigm: Dii labeling was used to label thalamic projections from the optic chiasma toward the thalamus. retrograde labeling was used to detect the number of rgcs reaching the thalamus.
 Histology
 E16.5
Retinal organization1
Abnormal
Description: Mutant mito-y positive retinal ganglion cells aggregate and fasciculate in the retina losing their normal mosaic pattern in the retinal ganglion layer, unlike those in controls.
Exp Paradigm: NA
 NA
 Not specified
Brain size2
 No change
 Gross necroscopy
 Unreported
Cortical thickness2
 No change
 Histology
 Unreported
Olfactory bulb morphology2
 No change
 Gross necroscopy
 Unreported
Size of cerebral ventricles: lateral ventricle2
 No change
 Histology
 Unreported
 Not Reported: Circadian sleep/wake cycle, Communications, Developmental profile, Emotion, Immune response, Learning & memory, Maternal behavior, Molecular profile, Motor phenotype, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior

M_DSCAM_1_SP-DEL17_HM

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Dendritic architecture: spine density1
Decreased
Description: The mean apical dendrite branch length was reduced by 15% in p10 dscam null mice compared to wt littermate controls. the total length of basal dendritic branch length (but not total apical dendritic branch length) was also reduced in dscam null mice.
Exp Paradigm: NA
 Sholl analysis
 P10
Dendritic architecture: dendritic length1
Increased
Description: The number of apical dendrite branches in layer v pyramidal neurons is increased in dscam null mice compared to wt littermate controls
Exp Paradigm: NA
 Sholl analysis
 P10
Cortical thickness1
Decreased
Description: Dscam null mice have significantly reduced cortical thickness, mainly of cortical layers ii/iii
Exp Paradigm: NA
 Histology
 P1, p10
Brain size1
Increased
Description: Dscam null mice have significantly increased brain size, especially normalized to their reduced body size, compared to wild type littermate controls
Exp Paradigm: NA
 Macroscopic analysis
 3 weeks
Size/growth1
Decreased
Description: Dscam null mice have reduced body size compared to will type littermate controls that is apparent early postnataly and persists through adulthood
Exp Paradigm: NA
 General observations
 P10, adult
Targeted expression1
Decreased
Description: The spontaneous mutation in exon 17 causes an almost complete lack of the dscam protein from the cortex of homozygous del17 mice
Exp Paradigm: NA
 Immunostaining
 3 weeks
Brain morphology1
 No change
 Histology
 3 weeks
Cortical lamination1
 No change
 Immunostaining
 P1
Cortical thickness1
 No change
 Histology
 P17, p21, p42
Dendritic architecture: dendritic length1
 No change
 Sholl analysis
 6 weeks
Dendritic architecture: spine density1
 No change
 Sholl analysis
 6 weeks
Neuronal number1
 No change
 Immunostaining
 E16.5
Apoptosis: brain cells1
 No change
 Tunel assay
 Unreported
 Not Reported: Circadian sleep/wake cycle, Communications, Emotion, Immune response, Learning & memory, Maternal behavior, Motor phenotype, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior

M_DSCAM_2_SP-DEL17_HM_THY1-YFP

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Dendritic architecture: spine density1
Decreased
Description: Dscam null/ thy1 yfp+ve mice show an overall reduction in length of spines, with decrease in the number of long (mature) spines and increase in the number of short (immature) spines with corresponding changes in other indicators for immature spines (smaller spine heads between 0.2 - 0.4 microns were increased in number in mutants compared to wt littermate controls, while larger spine heads between 0.4-0.6 microns were decreased in number). these differences were less obvious in p21, but were again recapitulated in adult p42 mice.
Exp Paradigm: NA
 Fluorescence microscopy
 P15, p21, p42
Dendritic architecture: dendritic tree complexity1
Increased
Description: Dscam null/thy1yfp+ve mice showed 14% increase in spine density at p15 when the yfp expression inlayer v pyramidal neurons was first determined to be robust
Exp Paradigm: NA
 Fluorescence microscopy
 P15
Dendritic architecture: dendritic tree complexity1
 No change
 Fluorescence microscopy
 P17, p21
 Not Reported: Circadian sleep/wake cycle, Communications, Developmental profile, Emotion, Immune response, Learning & memory, Maternal behavior, Molecular profile, Motor phenotype, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior

M_DSCAM_5_SP_HM

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Morphology and size of the optic tract: thalamic extension1
Decreased
Description: Mutants show a decrease in the number of axons extending from the optic chiasma to the dorsal thalamus, a decrease in the length of the tract and a decrease in the number of retinal ganglion cell axons in the tract, compared to controls. the number of rgc axons in the ipsilateral dorsal thalamus was decreased but not affected in the contralateral dorsal thalamus until e16.5.
Exp Paradigm: Dii labeling was used to label thalamic projections from the optic chiasma toward the thalamus. retrograde labeling was used to detect the number of rgcs reaching the thalamus.
 Histology
 E13.5-17.5
Morphology and size of the optic tract1
Increased
Description: Mutants show an increase in the size and number of retinal ganglion cell axon bundles in the ipsilateral and contralateral optic tracts from the eye to the optic chiasma compared to controls.
Exp Paradigm: Anterograde dii labeling was used to label ipsilateral axonal tracts.
 Histology
 E16.5
Morphology of the retina1
 No change
 Histology
 E15.5
 Not Reported: Circadian sleep/wake cycle, Communications, Developmental profile, Emotion, Immune response, Learning & memory, Maternal behavior, Molecular profile, Motor phenotype, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Social behavior

M_DSCAM_6_TG

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Morphology and size of the optic tract: thalamic extension1
Increased
Description: Mutants show longer ipsilateral optic tracts from the optic tract to the thalamus with a larger number of retinal ganglion cell axon bundles within the ipsilateral dorsal thalamus, compared to controls. mutants show no change in contralateral optic tract length or the number of retinal ganglion cell axon bundles in the contralateral dorsal thalamus, compared to controls.
Exp Paradigm: Anterograde dii labeling of all axons from one eye was performed.
 Histology
 E14.5
Morphology and size of the optic tract1
 No change
 Histology
 E14.5
 Not Reported: Circadian sleep/wake cycle, Communications, Developmental profile, Emotion, Immune response, Learning & memory, Maternal behavior, Molecular profile, Motor phenotype, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior

M_DSCAM_10_CKO_HM

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
General locomotor activity1
decreased
Description: total traveled distance was decreased in NEX-Dscam f/f mice
 Open field test
 month 2-3
Dendritic architecture: spine morphology1
increased
Description: width of spine head increased
 Golgi-Cox staining
 P42
Dendritic architecture: spine density1
abnormal
Description: densities of total spines and mature spines were markedly increased, whereas the density of immature spines remained unchanged
 Golgi-Cox staining
 P42
Circling1
increased
Description: NEX-Dscam f/f mice displayed increased amounts of circling and self-grooming than control mice
 Open field test
 month 2-3
Self grooming1
increased
Description: NEX-Dscam f/f mice displayed increased amounts of circling and self-grooming than control mice
 Open field test
 month 2-3
Social memory1
decreased
Description: NEX-Dscam f/f mice spent less time in the novel mouse chamber than in the familiar mouse chamber and did not differentiate between the chambers in terms of sniffing duration
 Three-chamber social approach test
 month 2-3
Spatial reference memory1
increased
Description: NEX-Dscam f/f mice displayed reduced latency to reach target and greater numbers of correct pokes; escape latency and number of errors were similar in both genotypes
 Barnes maze test
 month 2-3
Targeted expression1
decreased
Description: DSCAM level was reduced to 50% in the cortex of the resultant NEXDscam f/f mice
 Western blot
 unreported
Anxiety1
 no change
 Open field test
 month 2-3
Anxiety1
 no change
 Elevated plus maze test
 month 2-3
Spatial learning1
 no change
 Barnes maze test
 month 2-3
General locomotor activity1
 no change
 Barnes maze test
 month 2-3
Social approach1
 no change
 Three-chamber social approach test
 month 2-3
 Not Reported:

M_DSCAM_9_CKO_HM

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
General locomotor activity1
increased
Description: increased distance traveled and velocity in the OFT
 Open field test
 month 2-3
Dendritic architecture: dendritic tree complexity1
increased
Description: number of dendrites was significantly increased in P12-P42 in L5 and slightly increased in L2/3
 Golgi-Cox staining
 P12-42
Dendritic architecture: spine density1
increased
Description: densities of total, mature, and immature spines were greater in GFAP-Dscam f/f mice than in control mice at P21 in L2/3 and L5
 Golgi-Cox staining
 P21
Dendritic architecture: dendritic length1
increased
Description: dendritic length in sensory cortex L2/3 was increased at P21 and in L5 at P12 and P21 were increased in GFAP-Dscam f/f mice
 Golgi-Cox staining
 P12,P21
Synapse density1
increased
Description: number of asymmetric (excitatory) synapses was increased in sensory cortex L2/3 in GFAP-Dscam f/f mice
 Electron microscopy
 unreported
Dendritic architecture: spine density1
increased
Description: densities of total, mature, and immature spines were greater in GFAP-Dscam f/f mice than in control mice at P12 in L2/3 and L5
 Golgi-Cox staining
 P12
Cortical lamination1
abnormal
Description: density of NeuN1 neurons was decreased in layer 1 and increased in L2/3 in the cortex of GFAP-Dscam f/f mice
 Immunostaining
 unreported
Post-synaptic density size1
increased
Description: area, length, and thickness of the PSD were all greater in GFAP-Dscam f/f mice
 Electron microscopy
 unreported
Dendritic architecture: spine density1
increased
Description: densities of total and mature spines but not immature spines in L2/3 were greater in GFAP-Dscam f/f mice than in control mice at P42; densities of total, mature, and immature spines in L5 were greater in GFAP-Dscam f/f mice than in control mice at P42
 Golgi-Cox staining
 P42
Brain size1
increased
Description: GFAP-Dscam f/f mice has increased brain weight
 Measurement of tissue weight
 unreported
Dendritic architecture: spine morphology1
abnormal
Description: width of spine heads was greater in GFAP-Dscam f/f mice at P21 and P42 in L2/3 and L5
 Golgi-Cox staining
 P21,P42
Miniature post synaptic current frequency: excitatory1
increased
Description: GFAP-Dscam f/f mice displayed an increase in mEPSC frequency
 Whole-cell voltage clamp
 P12-42
Self grooming1
increased
Description: GFAP-Dscam f/f mice displayed increased amounts of circling and self-grooming than control mice
 Open field test
 month 2-3
Circling1
increased
Description: GFAP-Dscam f/f mice displayed increased amounts of circling and self-grooming than control mice
 Open field test
 month 2-3
Social memory1
decreased
Description: GFAP-Dscam f/f mice spent less time in the novel mouse chamber than in the familiar mouse chamber and did not differentiate between the chambers in terms of sniffing duration
 Three-chamber social approach test
 month 2-3
Anxiety1
increased
Description: GFAP-Dscam f/f mice entered the open arms less and spent less time in them
 Elevated plus maze test
 month 2-3
Anxiety1
increased
Description: decreased time in the center
 Open field test
 month 2-3
Spatial reference memory1
increased
Description: GFAP-Dscam f/f mice displayed reduced latency to reach target and greater numbers of correct pokes; escape latency and number of errors were similar in both genotypes
 Barnes maze test
 month 2-3
Targeted expression1
decreased
Description: DSCAM was ablated in neurons and astrocytes in GFAP-Dscam f/f mice
 Western blot
 unreported
Protein localization: synapse1
increased
Description: level of NLGN1 in the synaptosomal plasma membrane fraction was increased in GFAP-Dscam f/f mice
 Western blot
 unreported
Size/growth1
 no change
 Body weight measurement
 unreported
Spatial learning1
 no change
 Barnes maze test
 month 2-3
Protein expression level evidence1
 no change
 Western blot
 unreported
General locomotor activity1
 no change
 Barnes maze test
 month 2-3
Brain morphology1
 no change
 Histology
 unreported
Dendritic architecture: dendritic length1
 no change
 Golgi-Cox staining
 P42
Dendritic architecture: spine morphology1
 no change
 Golgi-Cox staining
 P12
Neuronal number1
 no change
 Immunostaining
 unreported
Neuronal number: interneurons1
 no change
 Immunostaining
 unreported
Miniature post synaptic current amplitude: excitatory1
 no change
 Whole-cell voltage clamp
 P12-42
Miniature post synaptic current amplitude: inhibitory1
 no change
 Whole-cell voltage clamp
 P12-42
Miniature post synaptic current frequency: inhibitory1
 no change
 Whole-cell voltage clamp
 P12-42
Presynaptic function: vesicle recycling1
 no change
 Electron microscopy
 unreported
Social approach1
 no change
 Three-chamber social approach test
 month 2-3
 Not Reported:



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