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Relevance to Autism

Three de novo loss-of-function (LoF) variants in the DSCAM gene were identified in ASD probands from the Simons Simplex Collection in Iossifov et al., 2014 (PMID 25363768), while a fourth de novo LoF variant in this gene was identified in one ASD proband from 2,270 trios screened by the Autism Sequencing Consortium in De Rubeis et al., 2014 (PMID 25363760). Two additional de novo LoF variants were identified in Chinese ASD probands from the Autism Clinical and Genetic Resources in China (ACGC) cohort in Wang et al., 2016 (PMID 27824329). Transmission and de novo association (TADA) analyses in Sanders et al., 2015 and Satterstrom et al., 2020 identified DSCAM as a candidate gene with a false discovery rate (FDR) 0.01. An intronic SNP in the DSCAM gene was found to associate with ASD in a GWAS meta-analysis of 7387 ASD cases and 8567 controls with a P-value < 1.0E-04 (Autism Spectrum Disorders Working Group of The Psychiatric Genomics Consortium 2017). A two-stage analysis of rare de novo and inherited coding variants in 42,607 ASD cases, including 35,130 new cases from the SPARK cohort, in Zhou et al., 2022 identified DSCAM as a gene reaching study-wide significance based on 5,754 constraint genes (P < 8.69E-06).

Molecular Function

This gene is a member of the immunoglobulin superfamily of cell adhesion molecules (Ig-CAMs), and is involved in human central and peripheral nervous system development. This gene is a candidate for Down syndrome and congenital heart disease (DSCHD)

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Positive Association
Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with ...
ASD
Support
De novo genic mutations among a Chinese autism spectrum disorder cohort.
ASD
Support
Prevalence and phenotypic impact of rare potentially damaging variants in autism spectrum disorder
ASD
Support
Insights into Autism Spectrum Disorder Genomic Architecture and Biology from 71 Risk Loci.
ASD
Support
Large-scale targeted sequencing identifies risk genes for neurodevelopmental disorders
ASD, DD
ID
Support
Support
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD
Support
DD, ID
Learning disability
Support
Inherited and multiple de novo mutations in autism/developmental delay risk genes suggest a multifactorial model.
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Whole genome sequencing resource identifies 18 new candidate genes for autism spectrum disorder
ASD
Support
Migrating pyramidal neurons require DSCAM to bypass the border of the developing cortical plate
Support
Targeted sequencing identifies 91 neurodevelopmental-disorder risk genes with autism and developmental-disability biases.
DD
Support
DSCAM deficiency leads to premature spine maturation and autism-like behaviors
ASD
Recent Recommendation
Genome Sequencing of Autism-Affected Families Reveals Disruption of Putative Noncoding Regulatory DNA
ASD
Recent Recommendation
Low load for disruptive mutations in autism genes and their biased transmission.
ASD
Recent Recommendation
Dysfunction of NMDA receptors in neuronal models of an autism spectrum disorder patient with a DSCAM mutation and in Dscam-knockout mice
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN645R001 
 splice_site_variant 
 c.4132+2T>A 
  
 De novo 
  
 Simplex 
 GEN645R002 
 frameshift_variant 
 c.5653dup 
 p.Met1885AsnfsTer82 
 De novo 
  
 Simplex 
 GEN645R003 
 frameshift_variant 
 c.4020_4021insTA 
 p.Asn1341Ter 
 De novo 
  
 Simplex 
 GEN645R004 
 splice_site_variant 
 c.2356+2T>G 
  
 De novo 
  
  
 GEN645R005 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Simplex 
 GEN645R006 
 frameshift_variant 
 c.1067del 
 p.Pro356LeufsTer5 
 De novo 
  
  
 GEN645R007 
 stop_gained 
 c.4885C>T 
 p.Arg1629Ter 
 De novo 
  
  
 GEN645R008 
 missense_variant 
 c.4859G>A 
 p.Arg1620Gln 
 Familial 
 Maternal 
  
 GEN645R009 
 stop_gained 
 c.4420G>T 
 p.Glu1474Ter 
 Familial 
 Maternal 
  
 GEN645R010 
 missense_variant 
 c.596C>T 
 p.Thr199Met 
 Familial 
 Paternal 
  
 GEN645R011 
 missense_variant 
 c.4859G>A 
 p.Arg1620Gln 
 Unknown 
 Not maternal 
  
 GEN645R012 
 missense_variant 
 c.596C>T 
 p.Thr199Met 
 Unknown 
  
  
 GEN645R013 
 frameshift_variant 
 c.5653dup 
 p.Met1885AsnfsTer82 
 De novo 
  
  
 GEN645R014 
 frameshift_variant 
 c.4019_4020insTA 
 p.Asn1341ThrfsTer10 
 De novo 
  
  
 GEN645R015 
 frameshift_variant 
 c.1533_1537del 
 p.Lys511AsnfsTer24 
 Unknown 
  
 Multiplex 
 GEN645R016 
 splice_site_variant 
 c.5687-1G>A 
  
 Familial 
 Maternal 
 Simplex 
 GEN645R017 
 missense_variant 
 c.1163G>T 
 p.Arg388Leu 
 Familial 
 Paternal 
 Simplex 
 GEN645R018 
 missense_variant 
 c.4024G>A 
 p.Gly1342Arg 
 Familial 
 Maternal 
 Simplex 
 GEN645R019 
 missense_variant 
 c.3253G>A 
 p.Glu1085Lys 
 De novo 
  
 Simplex 
 GEN645R020 
 intron_variant 
 c.3696+50C>T 
  
 De novo 
  
 Simplex 
 GEN645R021 
 intron_variant 
 c.3563-12C>G 
  
 De novo 
  
 Simplex 
 GEN645R022 
 missense_variant 
 c.3737A>G 
 p.Tyr1246Cys 
 De novo 
  
  
 GEN645R023 
 missense_variant 
 c.2459G>A 
 p.Arg820His 
 De novo 
  
  
 GEN645R024 
 missense_variant 
 c.1400G>T 
 p.Ser467Ile 
 De novo 
  
  
 GEN645R025 
 missense_variant 
 c.1009G>A 
 p.Val337Met 
 Familial 
 Maternal 
  
 GEN645R026 
 missense_variant 
 c.700C>T 
 p.Arg234Cys 
 Familial 
 Maternal 
  
 GEN645R027 
 missense_variant 
 c.5174G>A 
 p.Arg1725Gln 
 Familial 
 Paternal 
  
 GEN645R028 
 missense_variant 
 c.5681G>A 
 p.Arg1894Gln 
 Familial 
 Maternal 
  
 GEN645R029 
 missense_variant 
 c.5681G>A 
 p.Arg1894Gln 
 Familial 
 Maternal 
  
 GEN645R030 
 missense_variant 
 c.5060C>T 
 p.Thr1687Met 
 Unknown 
  
 Simplex 
 GEN645R031 
 missense_variant 
 c.5017G>C 
 p.Asp1673His 
 Unknown 
  
  
 GEN645R032 
 missense_variant 
 c.5680C>G 
 p.Arg1894Gly 
 Unknown 
  
  
 GEN645R033 
 missense_variant 
 c.5543C>T 
 p.Thr1848Met 
 Unknown 
  
  
 GEN645R034 
 missense_variant 
 c.1288G>A 
 p.Val430Met 
 Unknown 
  
  
 GEN645R035 
 missense_variant 
 c.386G>A 
 p.Arg129His 
 Unknown 
  
  
 GEN645R036 
 missense_variant 
 c.4849C>T 
 p.Arg1617Trp 
 Unknown 
  
  
 GEN645R037 
 missense_variant 
 c.5102C>T 
 p.Thr1701Met 
 Unknown 
  
  
 GEN645R038 
 missense_variant 
 c.2695C>T 
 p.Arg899Cys 
 Unknown 
  
  
 GEN645R039 
 missense_variant 
 c.1903C>T 
 p.Arg635Trp 
 Unknown 
  
  
 GEN645R040 
 missense_variant 
 c.5114C>T 
 p.Thr1705Met 
 Unknown 
  
 Simplex 
 GEN645R041 
 missense_variant 
 c.3547C>T 
 p.Arg1183Trp 
 Unknown 
  
  
 GEN645R042 
 missense_variant 
 c.3121G>T 
 p.Asp1041Tyr 
 Unknown 
  
  
 GEN645R043 
 missense_variant 
 c.2624G>A 
 p.Arg875His 
 Unknown 
  
  
 GEN645R044 
 missense_variant 
 c.5387G>T 
 p.Arg1796Leu 
 Unknown 
  
  
 GEN645R045 
 missense_variant 
 c.928G>A 
 p.Val310Met 
 Unknown 
  
  
 GEN645R046 
 missense_variant 
 c.928G>A 
 p.Val310Met 
 Unknown 
  
  
 GEN645R047 
 missense_variant 
 c.928G>A 
 p.Val310Met 
 Unknown 
  
  
 GEN645R048 
 missense_variant 
 c.4694C>T 
 p.Thr1565Met 
 Unknown 
  
  
 GEN645R049 
 missense_variant 
 c.4694C>T 
 p.Thr1565Met 
 Unknown 
  
  
 GEN645R050 
 missense_variant 
 c.2458C>T 
 p.Arg820Cys 
 Unknown 
  
  
 GEN645R051 
 missense_variant 
 c.2458C>T 
 p.Arg820Cys 
 Unknown 
  
 Simplex 
 GEN645R052 
 missense_variant 
 c.5041C>T 
 p.Arg1681Cys 
 Unknown 
  
  
 GEN645R053 
 missense_variant 
 c.5041C>T 
 p.Arg1681Cys 
 Unknown 
  
  
 GEN645R054 
 missense_variant 
 c.5041C>T 
 p.Arg1681Cys 
 Unknown 
  
  
 GEN645R055 
 missense_variant 
 c.2089C>T 
 p.Arg697Trp 
 Unknown 
  
  
 GEN645R056 
 missense_variant 
 c.2089C>T 
 p.Arg697Trp 
 Unknown 
  
  
 GEN645R057 
 missense_variant 
 c.2089C>T 
 p.Arg697Trp 
 Unknown 
  
  
 GEN645R058 
 missense_variant 
 c.1162C>T 
 p.Arg388Cys 
 Unknown 
  
  
 GEN645R059 
 missense_variant 
 c.5174G>A 
 p.Arg1725Gln 
 Unknown 
  
  
 GEN645R060 
 missense_variant 
 c.4504G>A 
 p.Gly1502Ser 
 Unknown 
  
  
 GEN645R061 
 missense_variant 
 c.412G>A 
 p.Gly138Ser 
 Unknown 
  
  
 GEN645R062 
 missense_variant 
 c.5531C>T 
 p.Ser1844Leu 
 Unknown 
  
  
 GEN645R063 
 missense_variant 
 c.5681G>A 
 p.Arg1894Gln 
 Unknown 
  
  
 GEN645R064 
 missense_variant 
 c.2501G>A 
 p.Arg834His 
 Unknown 
  
  
 GEN645R065 
 missense_variant 
 c.2501G>A 
 p.Arg834His 
 Unknown 
  
  
 GEN645R066 
 frameshift_variant 
 c.5113_5114del 
 p.Thr1705GlyfsTer148 
 Unknown 
  
  
 GEN645R067 
 frameshift_variant 
 c.3375_3376del 
 p.Arg1125SerfsTer14 
 Unknown 
  
  
 GEN645R068 
 stop_gained 
 c.1504A>T 
 p.Arg502Ter 
 Unknown 
  
  
 GEN645R069 
 stop_gained 
 c.4420G>T 
 p.Glu1474Ter 
 Unknown 
  
  
 GEN645R070 
 stop_gained 
 c.4420G>T 
 p.Glu1474Ter 
 Unknown 
  
  
 GEN645R071 
 missense_variant 
 c.5060C>T 
 p.Thr1687Met 
 Unknown 
  
  
 GEN645R072 
 missense_variant 
 c.3130G>T 
 p.Gly1044Trp 
 Unknown 
  
  
 GEN645R073 
 missense_variant 
 c.5261G>A 
 p.Arg1754Gln 
 Unknown 
  
  
 GEN645R074 
 missense_variant 
 c.5261G>A 
 p.Arg1754Gln 
 Unknown 
  
  
 GEN645R075 
 missense_variant 
 c.4849C>T 
 p.Arg1617Trp 
 Unknown 
  
  
 GEN645R076 
 missense_variant 
 c.5102C>T 
 p.Thr1701Met 
 Unknown 
  
  
 GEN645R077 
 missense_variant 
 c.4943C>T 
 p.Thr1648Met 
 Unknown 
  
  
 GEN645R078 
 missense_variant 
 c.4474G>A 
 p.Val1492Met 
 Unknown 
  
  
 GEN645R079 
 missense_variant 
 c.5048C>T 
 p.Thr1683Met 
 Unknown 
  
  
 GEN645R080 
 missense_variant 
 c.4045G>A 
 p.Val1349Met 
 Unknown 
  
  
 GEN645R081 
 missense_variant 
 c.3511G>A 
 p.Ala1171Thr 
 Unknown 
  
  
 GEN645R082 
 missense_variant 
 c.598C>T 
 p.Arg200Trp 
 Unknown 
  
  
 GEN645R083 
 missense_variant 
 c.587G>A 
 p.Arg196His 
 Unknown 
  
  
 GEN645R084 
 missense_variant 
 c.5387G>T 
 p.Arg1796Leu 
 Unknown 
  
  
 GEN645R085 
 missense_variant 
 c.5387G>T 
 p.Arg1796Leu 
 Unknown 
  
  
 GEN645R086 
 missense_variant 
 c.4694C>T 
 p.Thr1565Met 
 Unknown 
  
  
 GEN645R087 
 missense_variant 
 c.4645C>T 
 p.Arg1549Trp 
 Unknown 
  
  
 GEN645R088 
 missense_variant 
 c.4645C>T 
 p.Arg1549Trp 
 Unknown 
  
  
 GEN645R089 
 missense_variant 
 c.4645C>T 
 p.Arg1549Trp 
 Unknown 
  
  
 GEN645R090 
 missense_variant 
 c.1162C>T 
 p.Arg388Cys 
 Unknown 
  
  
 GEN645R091 
 missense_variant 
 c.1162C>T 
 p.Arg388Cys 
 Unknown 
  
  
 GEN645R092 
 missense_variant 
 c.4970G>A 
 p.Arg1657Gln 
 Unknown 
  
  
 GEN645R093 
 missense_variant 
 c.2501G>A 
 p.Arg834His 
 Unknown 
  
  
 GEN645R094 
 splice_site_variant 
 c.1387G>A 
 p.Gly463Arg 
 Familial 
 Paternal 
  
 GEN645R095 
 splice_site_variant 
 n.813+1G>A 
 p.? 
 Unknown 
  
  
 GEN645R096 
 frameshift_variant 
 c.2051del 
 p.Leu684Ter 
 De novo 
  
 Simplex 
 GEN645R097 
 stop_gained 
 c.4744C>T 
 p.Gln1582Ter 
 Unknown 
  
  
 GEN645R098 
 synonymous_variant 
 c.2511G>A 
 p.Val837%3D 
 De novo 
  
 Simplex 
 GEN645R099 
 splice_site_variant 
 c.4919+1G>T 
  
 De novo 
  
  
 GEN645R100 
 missense_variant 
 c.2386A>G 
 p.Thr796Ala 
 De novo 
  
  
 GEN645R101 
 missense_variant 
 c.4216G>A 
 p.Gly1406Ser 
 De novo 
  
  

Common

Variant ID
Polymorphism
SNP ID
Allele Change
Residue Change
Population Origin
Population Stage
Author, Year
 GEN645C001 
 intron_variant 
 rs62235658 
 c.3851-2266A>G;c.3143-2266A>G 
  
 7387 ASD cases and 8567 controls from Autism Center of Excellence Network (ACE), Autism Genetic Resource Exchange (AGRE), Autism Genome Project (AGP), Finnish Case-Control ASD Collection, NIMH Repository and Montreal/Boston (MonBos) Collection, Population-Based Autism Genetics and Environment Study (PAGES), Simons Simplex Collection (SSC), and Weiss Laboratory Autism Collection 
 Discovery 
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
21
Duplication
 3
 
21
Duplication
 11
 
21
Duplication
 2
 
21
Deletion-Duplication
 1
 
21
Duplication
 4
 
21
Deletion
 2
 
21
Deletion
 3
 
21
Deletion
 3
 
21
Deletion-Duplication
 8
 
21
Deletion
 5
 
21
Deletion-Duplication
 43
 

Model Summary

Dscam1 mutants' initial jump response was impaired.

References

Type
Title
Author, Year
Primary
Targeted sequencing identifies 91 neurodevelopmental-disorder risk genes with autism and developmental-disability biases.

F_DSCAM1_1_KD_GAL4:UAS;RNAI-VDRC3115

Model Type: Genetic
Model Genotype: Wild type
Mutation: Dscam1-Gal4 driver line expressing UAS-Dscam1-RNAi.
Allele Type: Loss-of-function
Strain of Origin: Not reported
Genetic Background: Not reported
ES Cell Line:
Mutant ES Cell Line:
Model Source:

F_DSCAM1_1_KD_GAL4:UAS;RNAI-VDRC3115

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Startle response1
Decreased
Description: When challenged in the light-off jump paradigm, the mutants' initial jump response was impaired (19% frequency of initial jumping), thus precluding proper assessment of habituation.
 Light-off startle jump
 adult stage
 Not Reported: Circadian sleep/wake cycle, Communications, Developmental profile, Emotion, Immune response, Learning & memory, Maternal behavior, Molecular profile, Motor phenotype, Neuroanatomy / ultrastructure / cytoarchitecture, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior



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