Summary Statistics:
ASD Reports: 18
Recent Reports: 3
Annotated variants: 102
Associated CNVs: 11
Evidence score: 4
Gene Score: 1
Relevance to Autism
Three de novo loss-of-function (LoF) variants in the DSCAM gene were identified in ASD probands from the Simons Simplex Collection in Iossifov et al., 2014 (PMID 25363768), while a fourth de novo LoF variant in this gene was identified in one ASD proband from 2,270 trios screened by the Autism Sequencing Consortium in De Rubeis et al., 2014 (PMID 25363760). Two additional de novo LoF variants were identified in Chinese ASD probands from the Autism Clinical and Genetic Resources in China (ACGC) cohort in Wang et al., 2016 (PMID 27824329). Transmission and de novo association (TADA) analyses in Sanders et al., 2015 and Satterstrom et al., 2020 identified DSCAM as a candidate gene with a false discovery rate (FDR) 0.01. An intronic SNP in the DSCAM gene was found to associate with ASD in a GWAS meta-analysis of 7387 ASD cases and 8567 controls with a P-value < 1.0E-04 (Autism Spectrum Disorders Working Group of The Psychiatric Genomics Consortium 2017). A two-stage analysis of rare de novo and inherited coding variants in 42,607 ASD cases, including 35,130 new cases from the SPARK cohort, in Zhou et al., 2022 identified DSCAM as a gene reaching study-wide significance based on 5,754 constraint genes (P < 8.69E-06).
Molecular Function
This gene is a member of the immunoglobulin superfamily of cell adhesion molecules (Ig-CAMs), and is involved in human central and peripheral nervous system development. This gene is a candidate for Down syndrome and congenital heart disease (DSCHD)
References
Primary
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Positive Association
Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with ...
ASD
Support
De novo genic mutations among a Chinese autism spectrum disorder cohort.
ASD
Support
Prevalence and phenotypic impact of rare potentially damaging variants in autism spectrum disorder
ASD
Support
Insights into Autism Spectrum Disorder Genomic Architecture and Biology from 71 Risk Loci.
ASD
Support
Large-scale targeted sequencing identifies risk genes for neurodevelopmental disorders
ASD, DD
ID
Support
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD
Support
DD, ID
Learning disability
Support
Inherited and multiple de novo mutations in autism/developmental delay risk genes suggest a multifactorial model.
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Whole genome sequencing resource identifies 18 new candidate genes for autism spectrum disorder
ASD
Support
Migrating pyramidal neurons require DSCAM to bypass the border of the developing cortical plate
Support
Targeted sequencing identifies 91 neurodevelopmental-disorder risk genes with autism and developmental-disability biases.
DD
Support
DSCAM deficiency leads to premature spine maturation and autism-like behaviors
ASD
Recent Recommendation
Genome Sequencing of Autism-Affected Families Reveals Disruption of Putative Noncoding Regulatory DNA
ASD
Recent Recommendation
Low load for disruptive mutations in autism genes and their biased transmission.
ASD
Recent Recommendation
Dysfunction of NMDA receptors in neuronal models of an autism spectrum disorder patient with a DSCAM mutation and in Dscam-knockout mice
ASD
GEN645R001
splice_site_variant
c.4132+2T>A
De novo
Simplex
GEN645R002
frameshift_variant
c.5653dup
p.Met1885AsnfsTer82
De novo
Simplex
GEN645R003
frameshift_variant
c.4020_4021insTA
p.Asn1341Ter
De novo
Simplex
GEN645R004
splice_site_variant
c.2356+2T>G
De novo
GEN645R005
copy_number_loss
Familial
Maternal
Simplex
GEN645R006
frameshift_variant
c.1067del
p.Pro356LeufsTer5
De novo
GEN645R007
stop_gained
c.4885C>T
p.Arg1629Ter
De novo
GEN645R008
missense_variant
c.4859G>A
p.Arg1620Gln
Familial
Maternal
GEN645R009
stop_gained
c.4420G>T
p.Glu1474Ter
Familial
Maternal
GEN645R010
missense_variant
c.596C>T
p.Thr199Met
Familial
Paternal
GEN645R011
missense_variant
c.4859G>A
p.Arg1620Gln
Unknown
Not maternal
GEN645R012
missense_variant
c.596C>T
p.Thr199Met
Unknown
GEN645R013
frameshift_variant
c.5653dup
p.Met1885AsnfsTer82
De novo
GEN645R014
frameshift_variant
c.4019_4020insTA
p.Asn1341ThrfsTer10
De novo
GEN645R015
frameshift_variant
c.1533_1537del
p.Lys511AsnfsTer24
Unknown
Multiplex
GEN645R016
splice_site_variant
c.5687-1G>A
Familial
Maternal
Simplex
GEN645R017
missense_variant
c.1163G>T
p.Arg388Leu
Familial
Paternal
Simplex
GEN645R018
missense_variant
c.4024G>A
p.Gly1342Arg
Familial
Maternal
Simplex
GEN645R019
missense_variant
c.3253G>A
p.Glu1085Lys
De novo
Simplex
GEN645R020
intron_variant
c.3696+50C>T
De novo
Simplex
GEN645R021
intron_variant
c.3563-12C>G
De novo
Simplex
GEN645R022
missense_variant
c.3737A>G
p.Tyr1246Cys
De novo
GEN645R023
missense_variant
c.2459G>A
p.Arg820His
De novo
GEN645R024
missense_variant
c.1400G>T
p.Ser467Ile
De novo
GEN645R025
missense_variant
c.1009G>A
p.Val337Met
Familial
Maternal
GEN645R026
missense_variant
c.700C>T
p.Arg234Cys
Familial
Maternal
GEN645R027
missense_variant
c.5174G>A
p.Arg1725Gln
Familial
Paternal
GEN645R028
missense_variant
c.5681G>A
p.Arg1894Gln
Familial
Maternal
GEN645R029
missense_variant
c.5681G>A
p.Arg1894Gln
Familial
Maternal
GEN645R030
missense_variant
c.5060C>T
p.Thr1687Met
Unknown
Simplex
GEN645R031
missense_variant
c.5017G>C
p.Asp1673His
Unknown
GEN645R032
missense_variant
c.5680C>G
p.Arg1894Gly
Unknown
GEN645R033
missense_variant
c.5543C>T
p.Thr1848Met
Unknown
GEN645R034
missense_variant
c.1288G>A
p.Val430Met
Unknown
GEN645R035
missense_variant
c.386G>A
p.Arg129His
Unknown
GEN645R036
missense_variant
c.4849C>T
p.Arg1617Trp
Unknown
GEN645R037
missense_variant
c.5102C>T
p.Thr1701Met
Unknown
GEN645R038
missense_variant
c.2695C>T
p.Arg899Cys
Unknown
GEN645R039
missense_variant
c.1903C>T
p.Arg635Trp
Unknown
GEN645R040
missense_variant
c.5114C>T
p.Thr1705Met
Unknown
Simplex
GEN645R041
missense_variant
c.3547C>T
p.Arg1183Trp
Unknown
GEN645R042
missense_variant
c.3121G>T
p.Asp1041Tyr
Unknown
GEN645R043
missense_variant
c.2624G>A
p.Arg875His
Unknown
GEN645R044
missense_variant
c.5387G>T
p.Arg1796Leu
Unknown
GEN645R045
missense_variant
c.928G>A
p.Val310Met
Unknown
GEN645R046
missense_variant
c.928G>A
p.Val310Met
Unknown
GEN645R047
missense_variant
c.928G>A
p.Val310Met
Unknown
GEN645R048
missense_variant
c.4694C>T
p.Thr1565Met
Unknown
GEN645R049
missense_variant
c.4694C>T
p.Thr1565Met
Unknown
GEN645R050
missense_variant
c.2458C>T
p.Arg820Cys
Unknown
GEN645R051
missense_variant
c.2458C>T
p.Arg820Cys
Unknown
Simplex
GEN645R052
missense_variant
c.5041C>T
p.Arg1681Cys
Unknown
GEN645R053
missense_variant
c.5041C>T
p.Arg1681Cys
Unknown
GEN645R054
missense_variant
c.5041C>T
p.Arg1681Cys
Unknown
GEN645R055
missense_variant
c.2089C>T
p.Arg697Trp
Unknown
GEN645R056
missense_variant
c.2089C>T
p.Arg697Trp
Unknown
GEN645R057
missense_variant
c.2089C>T
p.Arg697Trp
Unknown
GEN645R058
missense_variant
c.1162C>T
p.Arg388Cys
Unknown
GEN645R059
missense_variant
c.5174G>A
p.Arg1725Gln
Unknown
GEN645R060
missense_variant
c.4504G>A
p.Gly1502Ser
Unknown
GEN645R061
missense_variant
c.412G>A
p.Gly138Ser
Unknown
GEN645R062
missense_variant
c.5531C>T
p.Ser1844Leu
Unknown
GEN645R063
missense_variant
c.5681G>A
p.Arg1894Gln
Unknown
GEN645R064
missense_variant
c.2501G>A
p.Arg834His
Unknown
GEN645R065
missense_variant
c.2501G>A
p.Arg834His
Unknown
GEN645R066
frameshift_variant
c.5113_5114del
p.Thr1705GlyfsTer148
Unknown
GEN645R067
frameshift_variant
c.3375_3376del
p.Arg1125SerfsTer14
Unknown
GEN645R068
stop_gained
c.1504A>T
p.Arg502Ter
Unknown
GEN645R069
stop_gained
c.4420G>T
p.Glu1474Ter
Unknown
GEN645R070
stop_gained
c.4420G>T
p.Glu1474Ter
Unknown
GEN645R071
missense_variant
c.5060C>T
p.Thr1687Met
Unknown
GEN645R072
missense_variant
c.3130G>T
p.Gly1044Trp
Unknown
GEN645R073
missense_variant
c.5261G>A
p.Arg1754Gln
Unknown
GEN645R074
missense_variant
c.5261G>A
p.Arg1754Gln
Unknown
GEN645R075
missense_variant
c.4849C>T
p.Arg1617Trp
Unknown
GEN645R076
missense_variant
c.5102C>T
p.Thr1701Met
Unknown
GEN645R077
missense_variant
c.4943C>T
p.Thr1648Met
Unknown
GEN645R078
missense_variant
c.4474G>A
p.Val1492Met
Unknown
GEN645R079
missense_variant
c.5048C>T
p.Thr1683Met
Unknown
GEN645R080
missense_variant
c.4045G>A
p.Val1349Met
Unknown
GEN645R081
missense_variant
c.3511G>A
p.Ala1171Thr
Unknown
GEN645R082
missense_variant
c.598C>T
p.Arg200Trp
Unknown
GEN645R083
missense_variant
c.587G>A
p.Arg196His
Unknown
GEN645R084
missense_variant
c.5387G>T
p.Arg1796Leu
Unknown
GEN645R085
missense_variant
c.5387G>T
p.Arg1796Leu
Unknown
GEN645R086
missense_variant
c.4694C>T
p.Thr1565Met
Unknown
GEN645R087
missense_variant
c.4645C>T
p.Arg1549Trp
Unknown
GEN645R088
missense_variant
c.4645C>T
p.Arg1549Trp
Unknown
GEN645R089
missense_variant
c.4645C>T
p.Arg1549Trp
Unknown
GEN645R090
missense_variant
c.1162C>T
p.Arg388Cys
Unknown
GEN645R091
missense_variant
c.1162C>T
p.Arg388Cys
Unknown
GEN645R092
missense_variant
c.4970G>A
p.Arg1657Gln
Unknown
GEN645R093
missense_variant
c.2501G>A
p.Arg834His
Unknown
GEN645R094
splice_site_variant
c.1387G>A
p.Gly463Arg
Familial
Paternal
GEN645R095
splice_site_variant
n.813+1G>A
p.?
Unknown
GEN645R096
frameshift_variant
c.2051del
p.Leu684Ter
De novo
Simplex
GEN645R097
stop_gained
c.4744C>T
p.Gln1582Ter
Unknown
GEN645R098
synonymous_variant
c.2511G>A
p.Val837%3D
De novo
Simplex
GEN645R099
splice_site_variant
c.4919+1G>T
De novo
GEN645R100
missense_variant
c.2386A>G
p.Thr796Ala
De novo
GEN645R101
missense_variant
c.4216G>A
p.Gly1406Ser
De novo
GEN645C001
intron_variant
rs62235658
c.3851-2266A>G;c.3143-2266A>G
7387 ASD cases and 8567 controls from Autism Center of Excellence Network (ACE), Autism Genetic Resource Exchange (AGRE), Autism Genome Project (AGP), Finnish Case-Control ASD Collection, NIMH Repository and Montreal/Boston (MonBos) Collection, Population-Based Autism Genetics and Environment Study (PAGES), Simons Simplex Collection (SSC), and Weiss Laboratory Autism Collection
Discovery
21
Deletion-Duplication
1
21
Deletion-Duplication
8
21
Deletion-Duplication
43
Summary Statistics:
# of Reports: 1
# of Models: 1
External Links
Model Summary
Dscam1 mutants' initial jump response was impaired.
References
Primary
Targeted sequencing identifies 91 neurodevelopmental-disorder risk genes with autism and developmental-disability biases.
Model Type:
Genetic
Model Genotype:
Wild type
Mutation:
Dscam1-Gal4 driver line expressing UAS-Dscam1-RNAi.
Allele Type: Loss-of-function
Strain of Origin: Not reported
Genetic Background: Not reported
ES Cell Line:
Mutant ES Cell Line:
Model Source:
Decreased
View More
Description: When challenged in the light-off jump paradigm, the mutants' initial jump response was impaired (19% frequency of initial jumping), thus precluding proper assessment of habituation.
Light-off startle jump
adult stage
Not Reported:
Circadian sleep/wake cycle, Communications, Developmental profile, Emotion, Immune response, Learning & memory, Maternal behavior, Molecular profile, Motor phenotype, Neuroanatomy / ultrastructure / cytoarchitecture, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior
Summary Statistics:
Total Interactions: 8
Total Publications: 6
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