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Relevance to Autism

Single nucleotide polymorphism (SNP) array analysis showed a de novo 280kb deletion on chromosome 16q23.2 involving the CMIP gene in a girl with ASD and developmental delay (Van der Aa et al., 2012). De novo deletions involving the CMIP gene were identified in two additional patients diagnosed with ASD and ADHD and presenting with gastrointestinal issues in Luo et al., 2017.

Molecular Function

This gene encodes a c-Maf inducing protein that plays a role in T-cell signaling pathway. Association studies has shown a possible association between variation in the CMIP gene and nonword repetition ability in specific language impairment (Newbury et al., 2009), as well as between variation in CMIP and dyslexia/reading disability (Scerri et al., 2011).

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Haploinsufficiency of CMIP in a girl with autism spectrum disorder and developmental delay due to a de novo deletion on chromosome 16q23.2.
ASD
DD
Positive Association
Language impairment and dyslexia genes influence language skills in children with autism spectrum disorders.
ASD
Support
CMIP haploinsufficiency in two patients with autism spectrum disorder and co-occurring gastrointestinal issues.
ASD
ADHD, DD
Support
Large-scale discovery of novel genetic causes of developmental disorders.
Unknown diagnosis
Support
DCDC2, KIAA0319 and CMIP are associated with reading-related traits.
SLI, RD
Dyslexia, ADHD
Support
CMIP and ATP2C2 modulate phonological short-term memory in language impairment.
SLI

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN382R001 
 copy_number_loss 
  
  
 De novo 
  
 Simplex 
 GEN382R002 
 synonymous_variant 
 c.399G>A 
 p.Thr133= 
 De novo 
  
 Unknown 
 GEN382R003 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN382R004 
 copy_number_loss 
  
  
 De novo 
  
  

Common

Variant ID
Polymorphism
SNP ID
Allele Change
Residue Change
Population Origin
Population Stage
Author, Year
 GEN382C001 
 intron_variant 
 rs12927866 
 c.145-2159C>T;c.427-2159C>T;c.211-2159C>T;c.319-2159C>T;c.-135-2159C>T 
 A/G 
 806 individuals from 211 families ascertained by the SLI Consortium (SLIC). 
 Discovery 
 GEN382C002 
 intron_variant 
 rs4265801 
 c.195+10521T>G;c.477+10521T>G;c.261+10521T>G;c.369+10521T>G;c.-85+10521T>G 
 T/G 
 806 individuals from 211 families ascertained by the SLI Consortium (SLIC). 
 Discovery 
 GEN382C003 
 intron_variant 
 rs7201632 
 c.196-8360T>C;c.478-8360T>C;c.262-8360T>C;c.370-8360T>C;c.-1705T>C;c.-84-8360T>C 
 C/T 
 806 individuals from 211 families ascertained by the SLI Consortium (SLIC). 
 Discovery 
 GEN382C004 
 intron_variant 
 rs6564903 
 c.145-824C>T;c.427-824C>T;c.211-824C>T;c.319-824C>T;c.-135-824C>T 
 C/T 
 806 individuals from 211 families ascertained by the SLI Consortium (SLIC). 
 Discovery 
 GEN382C005 
 intron_variant 
 rs3935802 
 c.195+7036G>C;c.477+7036G>C;c.261+7036G>C;c.369+7036G>C;c.-85+7036G>C 
 G/C 
 806 individuals from 211 families ascertained by the SLI Consortium (SLIC). 
 Discovery 
 GEN382C006 
 intron_variant 
 rs16955705 
 c.196-12458A>C;c.478-12458A>C;c.262-12458A>C;c.370-12458A>C;c.-84-12458A>C;c.-85+4659A>C 
 C/A 
 806 individuals from 211 families ascertained by the SLI Consortium (SLIC). 
 Discovery 
 GEN382C007 
 intron_variant 
 rs4243209 
 c.358-1289C>T;c.640-1289C>T;c.424-1289C>T;c.532-1289C>T;c.214-1289C>T;c.79-1289C>T 
 C/T 
 806 individuals from 211 families ascertained by the SLI Consortium (SLIC). 
 Discovery 
 GEN382C008 
 intron_variant 
 rs4265801 
 c.195+10521T>G;c.477+10521T>G;c.261+10521T>G;c.369+10521T>G;c.-85+10521T>G 
 T/G 
 ALSPAC (Avon Longitudinal Study of Parents and Children) 
 Replication 
 GEN382C009 
 intron_variant 
 rs16955705 
 c.196-12458A>C;c.478-12458A>C;c.262-12458A>C;c.370-12458A>C;c.-84-12458A>C;c.-85+4659A>C 
 C/A 
 ALSPAC (Avon Longitudinal Study of Parents and Children) 
 Replication 
 GEN382C010 
 intron_variant 
 rs12927866 
 c.145-2159C>T;c.427-2159C>T;c.211-2159C>T;c.319-2159C>T;c.-135-2159C>T 
 T(minor allele) 
 ALSPAC (Avon Longitudinal Study of Parents and Children) 
 Discovery 
 GEN382C011 
 intron_variant 
 rs6564903 
 c.145-824C>T;c.427-824C>T;c.211-824C>T;c.319-824C>T;c.-135-824C>T 
 T(minor allele) 
 ALSPAC (Avon Longitudinal Study of Parents and Children) 
 Discovery 
 GEN382C012 
 intron_variant 
 rs16955705 
 c.196-12458A>C;c.478-12458A>C;c.262-12458A>C;c.370-12458A>C;c.-84-12458A>C;c.-85+4659A>C 
  
 ALSPAC (Avon Longitudinal Study of Parents and Children) 
 Discovery 
 GEN382C013 
 intron_variant, 2KB_upstream_varinat 
 rs2966099 
 c.18+21349T>C;c.300+71302T>C;c.-1058T>C;c.-950T>C 
  
 AGRE and SSC 
 Discovery 
 GEN382C014 
 intron_variant 
 rs2927332 
 c.300+30147A>C 
  
 AGRE and SSC 
 Discovery 
 GEN382C015 
 intron_variant 
 rs12596138 
 c.300+11603C>T 
 T/C 
 AGRE and SSC 
 Discovery 
 GEN382C016 
 intron_variant 
 rs2927321 
 c.300+35623A>G 
  
 AGRE and SSC 
 Discovery 
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
16
Duplication
 1
 
16
Duplication
 2
 
16
Duplication
 1
 
16
Deletion
 1
 
16
Deletion
 1
 
16
Duplication
 6
 
16
Deletion-Duplication
 14
 
16
Deletion
 2
 
16
Deletion
 6
 
16
Duplication
 1
 
16
Deletion
 5
 

No Animal Model Data Available


Interactor Symbol Interactor Name Interactor Organism Entrez ID Uniprot ID Interaction Type Evidence Reference
CHD8 chromodomain helicase DNA binding protein 8 57680 Q9HCK8 CHIP-seq
Cotney J , et al. 2015
P2RY1 purinergic receptor P2Y, G-protein coupled, 1 5028 P47900 IP; LC-MS/MS
Huttlin EL , et al. 2015
TOP3B topoisomerase (DNA) III beta 8940 O95985 HITS-CLIP
Xu D , et al. 2013
MET met proto-oncogene 17295 P16056 IP; LC-MS/MS
Xie Z , et al. 2016

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