CMIP
Homo sapiens
Gene Name: c-Maf inducing protein
Aliases: KIAA1694, TCMIP
Chromosome No: 16
Chromosome Band: 16q23.2-q23.3
Genetic Category: Genetic Association-Rare single gene variant-Multigenic CNV
Aliases: KIAA1694, TCMIP
Chromosome No: 16
Chromosome Band: 16q23.2-q23.3
Genetic Category: Genetic Association-Rare single gene variant-Multigenic CNV
Summary Statistics:
ASD Reports: 6
Recent Reports: 0
Annotated variants: 20
Associated CNVs: 11
Evidence score: 0
ASD Reports: 6
Recent Reports: 0
Annotated variants: 20
Associated CNVs: 11
Evidence score: 0
Associated Disorders: |
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Relevance to Autism
Single nucleotide polymorphism (SNP) array analysis showed a de novo 280kb deletion on chromosome 16q23.2 involving the CMIP gene in a girl with ASD and developmental delay (Van der Aa et al., 2012). De novo deletions involving the CMIP gene were identified in two additional patients diagnosed with ASD and ADHD and presenting with gastrointestinal issues in Luo et al., 2017.
Molecular Function
This gene encodes a c-Maf inducing protein that plays a role in T-cell signaling pathway. Association studies has shown a possible association between variation in the CMIP gene and nonword repetition ability in specific language impairment (Newbury et al., 2009), as well as between variation in CMIP and dyslexia/reading disability (Scerri et al., 2011).
References
Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Haploinsufficiency of CMIP in a girl with autism spectrum disorder and developmental delay due to a de novo deletion on chromosome 16q23.2.
ASD
DD
Positive Association
Language impairment and dyslexia genes influence language skills in children with autism spectrum disorders.
ASD
Support
CMIP haploinsufficiency in two patients with autism spectrum disorder and co-occurring gastrointestinal issues.
ASD
ADHD, DD
Support
Large-scale discovery of novel genetic causes of developmental disorders.
Unknown diagnosis
Support
DCDC2, KIAA0319 and CMIP are associated with reading-related traits.
SLI, RD
Dyslexia, ADHD
Support
CMIP and ATP2C2 modulate phonological short-term memory in language impairment.
SLI
Rare
Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
GEN382R002
synonymous_variant
c.399G>A
p.Thr133=
De novo
Unknown
Common
Variant ID
Polymorphism
SNP ID
Allele Change
Residue Change
Population Origin
Population Stage
Author, Year
GEN382C001
intron_variant
rs12927866
c.145-2159C>T;c.427-2159C>T;c.211-2159C>T;c.319-2159C>T;c.-135-2159C>T
A/G
806 individuals from 211 families ascertained by the SLI Consortium (SLIC).
Discovery
GEN382C002
intron_variant
rs4265801
c.195+10521T>G;c.477+10521T>G;c.261+10521T>G;c.369+10521T>G;c.-85+10521T>G
T/G
806 individuals from 211 families ascertained by the SLI Consortium (SLIC).
Discovery
GEN382C003
intron_variant
rs7201632
c.196-8360T>C;c.478-8360T>C;c.262-8360T>C;c.370-8360T>C;c.-1705T>C;c.-84-8360T>C
C/T
806 individuals from 211 families ascertained by the SLI Consortium (SLIC).
Discovery
GEN382C004
intron_variant
rs6564903
c.145-824C>T;c.427-824C>T;c.211-824C>T;c.319-824C>T;c.-135-824C>T
C/T
806 individuals from 211 families ascertained by the SLI Consortium (SLIC).
Discovery
GEN382C005
intron_variant
rs3935802
c.195+7036G>C;c.477+7036G>C;c.261+7036G>C;c.369+7036G>C;c.-85+7036G>C
G/C
806 individuals from 211 families ascertained by the SLI Consortium (SLIC).
Discovery
GEN382C006
intron_variant
rs16955705
c.196-12458A>C;c.478-12458A>C;c.262-12458A>C;c.370-12458A>C;c.-84-12458A>C;c.-85+4659A>C
C/A
806 individuals from 211 families ascertained by the SLI Consortium (SLIC).
Discovery
GEN382C007
intron_variant
rs4243209
c.358-1289C>T;c.640-1289C>T;c.424-1289C>T;c.532-1289C>T;c.214-1289C>T;c.79-1289C>T
C/T
806 individuals from 211 families ascertained by the SLI Consortium (SLIC).
Discovery
GEN382C008
intron_variant
rs4265801
c.195+10521T>G;c.477+10521T>G;c.261+10521T>G;c.369+10521T>G;c.-85+10521T>G
T/G
ALSPAC (Avon Longitudinal Study of Parents and Children)
Replication
GEN382C009
intron_variant
rs16955705
c.196-12458A>C;c.478-12458A>C;c.262-12458A>C;c.370-12458A>C;c.-84-12458A>C;c.-85+4659A>C
C/A
ALSPAC (Avon Longitudinal Study of Parents and Children)
Replication
GEN382C010
intron_variant
rs12927866
c.145-2159C>T;c.427-2159C>T;c.211-2159C>T;c.319-2159C>T;c.-135-2159C>T
T(minor allele)
ALSPAC (Avon Longitudinal Study of Parents and Children)
Discovery
GEN382C011
intron_variant
rs6564903
c.145-824C>T;c.427-824C>T;c.211-824C>T;c.319-824C>T;c.-135-824C>T
T(minor allele)
ALSPAC (Avon Longitudinal Study of Parents and Children)
Discovery
GEN382C012
intron_variant
rs16955705
c.196-12458A>C;c.478-12458A>C;c.262-12458A>C;c.370-12458A>C;c.-84-12458A>C;c.-85+4659A>C
ALSPAC (Avon Longitudinal Study of Parents and Children)
Discovery
GEN382C013
intron_variant, 2KB_upstream_varinat
rs2966099
c.18+21349T>C;c.300+71302T>C;c.-1058T>C;c.-950T>C
AGRE and SSC
Discovery
GEN382C014
intron_variant
rs2927332
c.300+30147A>C
AGRE and SSC
Discovery
GEN382C015
intron_variant
rs12596138
c.300+11603C>T
T/C
AGRE and SSC
Discovery
GEN382C016
intron_variant
rs2927321
c.300+35623A>G
AGRE and SSC
Discovery