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Relevance to Autism

Two de novo variants in the BAZ2B gene (a loss-of-function variant and a damaging missense variant) were identified in ASD probands from the Simons Simplex Collection in Iossifov et al., 2014. A second loss-of-function (LoF) variant in BAZ2B was identified in a patient presenting with ASD, moderate intellectual disability, and macrocephaly in Bowling et al., 2017. A third LoF variant in this gene was identified as a mosaic mutation in another ASD proband from the Simons Simplex Collection in Krupp et al., 2017. Scott et al., 2020 identified seven individuals with heterozygous deletions, nonsense, or de novo missense variants affecting BAZ2B, all of whom presented with developmental delay, intellectual disability, and/or ASD; most of these individuals also presented with dysmorphic features and/or congenital anomalies.

Molecular Function

This gene belongs to the bromodomain gene family. Members of this gene family encode proteins that are integral components of chromatin remodeling complexes. The encoded protein showed strong preference for the activating H3K14Ac mark in a histone peptide screen, suggesting a potential role in transcriptional activation.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
DD
ASD or autistic features, ID, epilepsy/seizures
Support
Integrating de novo and inherited variants in 42
ASD
Support
Inherited and De Novo Genetic Risk for Autism Impacts Shared Networks.
ASD
Support
Genomic diagnosis for children with intellectual disability and/or developmental delay.
ASD, ID
Support
Meta-analysis of 2,104 trios provides support for 10 new genes for intellectual disability
ID
Recent recommendation
BAZ2B haploinsufficiency as a cause of developmental delay, intellectual disability, and autism spectrum disorder.
ASD, DD, ID
Recent Recommendation
Exonic Mosaic Mutations Contribute Risk for Autism Spectrum Disorder.
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN975R001 
 frameshift_variant 
 c.6014dup 
 p.Asn2005LysfsTer5 
 De novo 
  
 Simplex 
 GEN975R002 
 missense_variant 
 c.1874A>T 
 p.Asp625Val 
 De novo 
  
 Simplex 
 GEN975R003 
 stop_gained 
 c.242C>G 
 p.Ser81Ter 
 De novo 
  
  
 GEN975R004 
 stop_gained 
 c.3868C>T 
 p.Arg1290Ter 
 De novo 
  
 Simplex 
 GEN975R005 
 stop_gained 
 c.4490C>G 
 p.Ser1497Ter 
 Familial 
 Paternal 
 Multiplex 
 GEN975R006 
 stop_gained 
 c.349C>T 
 p.Arg117Ter 
 De novo 
  
 Simplex 
 GEN975R007 
 copy_number_loss 
  
  
 Unknown 
  
 Unknown 
 GEN975R008 
 copy_number_loss 
  
  
 Unknown 
  
 Unknown 
 GEN975R009 
 stop_gained 
 c.242C>G 
 p.Ser81Ter 
 De novo 
  
 Simplex 
 GEN975R010 
 stop_gained 
 c.628C>T 
 p.Arg210Ter 
 Unknown 
  
 Simplex 
 GEN975R011 
 missense_variant 
 c.2126G>A 
 p.Cys709Tyr 
 De novo 
  
 Multiplex 
 GEN975R012 
 missense_variant 
 c.4893A>T 
 p.Ser1631= 
 De novo 
  
 Simplex 
 GEN975R013 
 synonymous_variant 
 c.4992T>C 
 p.Asn1664%3D 
 De novo 
  
 Simplex 
 GEN975R014 
 synonymous_variant 
 c.5052G>A 
 p.Gln1684%3D 
 De novo 
  
  
 GEN975R015 
 missense_variant 
 c.4490C>G 
 p.Thr1497Arg 
 De novo 
  
  
 GEN975R016 
 synonymous_variant 
 c.2106C>T 
 p.Gly702%3D 
 De novo 
  
  
 GEN975R017 
 copy_number_loss 
  
  
 De novo 
  
  
  et al.  
 GEN975R018 
 copy_number_loss 
  
  
 Unknown 
  
  
  et al.  
 GEN975R019 
 copy_number_loss 
  
  
 Familial 
 Paternal 
  
  et al.  
 GEN975R020 
 frameshift_variant 
 c.1435del 
 p.His479ThrfsTer6 
 De novo 
  
 Simplex 
  et al.  
 GEN975R021 
 frameshift_variant 
 c.2105dup 
 p.Ser703LeufsTer9 
 Familial 
 Maternal 
 Simplex 
  et al.  
 GEN975R022 
 missense_variant 
 c.502G>A 
 p.Gly168Ser 
 Unknown 
 Not maternal 
  
  et al.  
 GEN975R023 
 missense_variant 
 c.2152C>T 
 p.Leu718Phe 
 De novo 
  
 Simplex 
  et al.  
 GEN975R024 
 splice_site_variant 
 c.2967+3_2967+6del 
  
 De novo 
  
 Simplex 
  et al.  
 GEN975R025 
 initiator_codon_variant 
 c.2T>C 
 p.Met1? 
 De novo 
  
 Simplex 
  et al.  
 GEN975R026 
 inframe_deletion 
 c.1910_1927del 
 p.Ser637_Asp642del 
 Unknown 
 Not maternal 
  
  et al.  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
2
Duplication
 1
 
2
Duplication
 1
 
2
Duplication
 1
 
2
Deletion
 1
 
2
Deletion
 1
 
2
Deletion-Duplication
 7
 
2
Deletion
 3
 
2
Deletion
 1
 
2
Deletion-Duplication
 17
 

No Animal Model Data Available

 

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