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Relevance to Autism

A de novo non-coding variant that was predicted to target the BACE1 gene via chromatin interactions was identified in a Korean ASD proband from a simplex family in Kim et al., 2022; functional analysis in human induced pluripotent stem cells derived from the proband and the proband's parents demonstrated that this variant resulted in significantly increased levels of BACE1 expression in patient-derived hiPSCs compared to parent-derived hiPSCs. A rare de novo intronic variant in this gene had previously been identified in an ASD proband from the Simons Simplex Collection in Turner et al., 2017. Elevated levels of BACE1 transcript was observed in peripheral blood from ASD individuals compared to matched healthy controls in Ghafouri-Fard et al., 2020. BACE1 has also been linked to schizophrenia (Savonenko et al., 2008)

Molecular Function

This gene encodes a member of the peptidase A1 family of aspartic proteases. Alternative splicing results in multiple transcript variants, at least one of which encodes a preproprotein that is proteolytically processed to generate the mature protease. This transmembrane protease catalyzes the first step in the formation of amyloid beta peptide from amyloid precursor protein.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Non-coding de novo mutations in chromatin interactions are implicated in autism spectrum disorder
ASD
Support
Expression Analysis of BDNF
ASD
Support
Genomic Patterns of De Novo Mutation in Simplex Autism
ASD
Support
Alteration of BACE1-dependent NRG1/ErbB4 signaling and schizophrenia-like phenotypes in BACE1-null mice
SCZ

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1343R001 
 intron_variant 
  
  
 De novo 
  
 Simplex 
 GEN1343R002 
 intron_variant 
 c.262-2291G>A 
  
 De novo 
  
 Simplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
11
Duplication
 1
 
11
Duplication
 1
 
11
Duplication
 2
 
11
Deletion-Duplication
 19
 
11
Deletion
 9
 

No Animal Model Data Available

 

No Interactions Available
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