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Relevance to Autism

Two de novo variants in the ARHGAP5 gene (one loss-of-function variant, one missense variant predicted in silico to be damaging) were identified in ASD probands (De Rubeis et al., 2014; Iossifov et al., 2014). TADA-Denovo analysis using a combined dataset of previously published cohorts from the Simons Simplex Collection and the Autism Sequencing Consortium, as well as a novel cohort of 262 Japanese ASD trios, in Takata et al., 2018 identified ARHGAP5 as a gene significantly enriched in damaging de novo mutations in ASD cases (pBH < 0.05).

Molecular Function

Rho GTPase activating protein 5 negatively regulates RHO GTPases, a family which may mediate cytoskeleton changes by stimulating the hydrolysis of bound GTP.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Exploring the biological role of postzygotic and germinal de novo mutations in ASD
ASD
Support
De Novo Sequence and Copy Number Variants Are Strongly Associated with Tourette Disorder and Implicate Cell Polarity in Pathogenesis.
TS
Support
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD
Recent Recommendation
Integrative Analyses of De Novo Mutations Provide Deeper Biological Insights into Autism Spectrum Disorder.
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1002R001 
 stop_gained 
 c.1462G>T 
 p.Glu488Ter 
 De novo 
  
 Simplex 
 GEN1002R002 
 missense_variant 
 c.983A>C 
 p.Gln328Pro 
 De novo 
  
  
 GEN1002R003 
 stop_gained 
 c.2482C>T 
 p.Arg828Ter 
 De novo 
  
 Multiplex 
 GEN1002R004 
 stop_gained 
 c.1441G>T 
 p.Glu481Ter 
 De novo 
  
 Simplex 
 GEN1002R005 
 missense_variant 
 c.1748G>A 
 p.Arg583His 
 De novo 
  
  
 GEN1002R006 
 frameshift_variant 
 c.3559_3562del 
 p.Lys1187GlufsTer35 
 De novo 
  
  
 GEN1002R007 
 missense_variant 
 c.2101G>C 
 p.Ala701Pro 
 De novo 
  
 Multiplex 
 GEN1002R008 
 splice_site_variant 
 c.3865+5G>A 
  
 De novo 
  
  
 GEN1002R009 
 missense_variant 
 c.85A>G 
 p.Asn29Asp 
 De novo 
  
  
 GEN1002R010 
 missense_variant 
 c.1717G>A 
 p.Ala573Thr 
 De novo 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
14
Duplication
 1
 
14
Deletion
 2
 
14
Deletion
 1
 
14
Deletion
 1
 
14
Duplication
 1
 

No Animal Model Data Available

 

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