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Relevance to Autism

Two de novo missense variants with CADD scores > 30 were identified in the ADGRB1 gene in a Korean ASD proband in Kim et al., 2024; this gene was subsequently classified as an ASD candidate gene in males following a combined TADA analysis consisting of the Korean ASD cohort described in Kim et al., 2024 in addition to the Simons Simplex Collection and the SPARK cohort. A de novo loss-of-function variant in ADGRB1 was identified in an SSC proband, and two additional de novo missense variants with CADD scores > 30 were identified in this gene in ASD probands from the Autism Sequencing Consortium and SPARK (Iossifov et al., 2014; Satterstrom et al., 2020; Zhou et al., 2022). De novo missense variants in ADGRB1 have also been identified in ASD probands from Japanese and Chinese cohorts (Takata et al., 2018; Yuan et al., 2023; Wang et al., 2023).

Molecular Function

Inhibits MDM2-mediated ubiquitination and degradation of DLG4/PSD95, promoting DLG4 stability and regulating synaptic plasticity. Required for the formation of dendritic spines by ensuring the correct localization of PARD3 and TIAM1.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Whole genome sequencing analysis identifies sex differences of familial pattern contributing to phenotypic diversity in autism
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD
Support
ADGRB1 contributes to astrocyte-mediated phagocytosis of excitatory synapses
ASD
Support
Integrative Analyses of De Novo Mutations Provide Deeper Biological Insights into Autism Spectrum Disorder.
ASD
Support
Evaluation of familial phenotype deviation to measure the impact of de novo mutations in autism
ASD
Support
Whole genome sequencing resource identifies 18 new candidate genes for autism spectrum disorder
ASD
Support
The genetic landscape of autism spectrum disorder in an ancestrally diverse cohort
ASD
Support
The contribution of de novo coding mutations to autism spectrum disorder
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1475R001a 
 missense_variant 
 c.3418T>C 
 p.Cys1140Arg 
 De novo 
  
  
 GEN1475R001b 
 missense_variant 
 c.3418T>C 
 p.Cys1140Arg 
 De novo 
  
  
 GEN1475R002 
 stop_gained 
 c.3246C>G 
 p.Tyr1082Ter 
 De novo 
  
 Simplex 
 GEN1475R003 
 inframe_deletion 
 c.55_57del 
 p.Leu19del 
 De novo 
  
 Simplex 
 GEN1475R004 
 missense_variant 
 c.3593G>A 
 p.Arg1198His 
 De novo 
  
  
 GEN1475R005 
 missense_variant 
 c.1870G>A 
 p.Ala624Thr 
 De novo 
  
  
 GEN1475R006 
 missense_variant 
 c.2744A>G 
 p.Asp915Gly 
 De novo 
  
 Simplex 
 GEN1475R007 
 missense_variant 
 c.2840C>T 
 p.Pro947Leu 
 De novo 
  
  
 GEN1475R008 
 missense_variant 
 c.86G>C 
 p.Arg29Pro 
 De novo 
  
 Simplex 
 GEN1475R009 
 missense_variant 
 c.1640G>A 
 p.Arg547His 
 De novo 
  
 Multiplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
8
Duplication
 1
 
8
Duplication
 1
 
8
Duplication
 4
 
8
Duplication
 3
 
8
Duplication
 2
 
8
Deletion
 3
 
8
Duplication
 1
 
8
Deletion-Duplication
 39
 

No Animal Model Data Available

No PIN Data Available
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