Summary Statistics:
ASD Reports: 101
Recent Reports: 11
Annotated variants: 219
Associated CNVs: 3
Evidence score: 5
Gene Score: 1S
Relevance to Autism
Recurrent mutations in the ADNP gene have been identified in multiple individuals with ASD as described below. Two de novo frameshift variants in ADNP were identified in unrelated simplex ASD cases in two reports by O'Roak and colleagues in 2012 (PMIDs 22495309 and 23160955). An additional seven de novo LoF variants were identified in patients with ASD in Helsmoortel et al., 2014, giving a current total of nine de novo LoF variants in ADNP gene in ASD cases; the probability of detecting eight or more de novo truncating events in ADNP was given as P=2.65 x 10-18 in this report (PMID 24531329). Furthermore, the frequency of shared clinical characteristics in ASD cases with LoF variants in ADNP (intellectual disability, facial dysmorphisms) led Helsmoortel and colleagues to conclude that ADNP mutations resulted in an autism syndrome. Analysis of rare coding variation in 3,871 ASD cases and 9,937 ancestry-matched or paternal controls from the Autism Sequencing Consortium (ASC) in De Rubeis et al., 2014 identified ADNP as a gene meeting high statistical significance with a FDR 0.01, meaning that this gene had a 99% chance of being a true autism gene (PMID 25363760). This gene was identified in Iossifov et al. 2015 as a strong candidate to be an ASD risk gene based on a combination of de novo mutational evidence and the absence or very low frequency of mutations in controls (PMID 26401017). A two-stage analysis of rare de novo and inherited coding variants in 42,607 ASD cases, including 35,130 new cases from the SPARK cohort, in Zhou et al., 2022 identified ADNP as a gene reaching exome-wide significance (P < 2.5E-06).
Molecular Function
Potential transcription factor that may mediate some of the neuroprotective peptide VIP-associated effects involving normal growth and cancer proliferation. In brain, expression is stronger in the cerebellum and cortex regions.
References
Primary
Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations.
ASD
Support
Multiplex targeted sequencing identifies recurrently mutated genes in autism spectrum disorders.
ASD
Support
Whole genome sequencing and variant discovery in the ASPIRE autism spectrum disorder cohort.
ASD
Support
Using medical exome sequencing to identify the causes of neurodevelopmental disorders: experience of two clinical units and 216 patients.
ID
Support
Impaired Neurodevelopmental Genes in Slovenian Autistic Children Elucidate the Comorbidity of Autism With Other Developmental Disorders
ASD
ADHD, DD, ID
Support
Unveiling Hidden Genetic Architectures: Molecular Diagnostic Yield of Whole Exome Sequencing in 50 Children With Autism Spectrum Disorder Negative for Copy Number Variations
ASD
Support
Insights into Autism Spectrum Disorder Genomic Architecture and Biology from 71 Risk Loci.
ASD
Support
Early behavioral and developmental interventions in ADNP-syndrome: A case report of SWI/SNF-related neurodevelopmental syndrome
Helsmoortel-Van der Aa syndrome
ASD
Support
The utility of exome sequencing in diagnosing pediatric neurodevelopmental disorders in a highly consanguineous population
DD
ASD
Support
The autism spectrum phenotype in ADNP syndrome.
ID
ASD
Support
De novo genic mutations among a Chinese autism spectrum disorder cohort.
ASD
Support
Prevalence and phenotypic impact of rare potentially damaging variants in autism spectrum disorder
ASD
Support
Blepharophimosis with intellectual disability and Helsmoortel-Van Der Aa Syndrome share episignature and phenotype
Helsmoortel-van der Aa syndrome
Support
Gene domain-specific DNA methylation episignatures highlight distinct molecular entities of ADNP syndrome.
Helsmoortel-Van der Aa syndrome
Support
Helsmoortel-van der Aa syndrome
Support
The Eight and a Half Year Journey of Undiagnosed AD: Gene Sequencing and Funding of Advanced Genetic Testing Has Led to Hope and New Beginnings
Helsmoortel-Van der Aa syndrome
ASD, DD, ID
Support
A convergent mechanism of high risk factors ADNP and POGZ in neurodevelopmental disorders
Support
Clinical and genetic findings in autism spectrum disorders analyzed using exome sequencing
ASD
ADHD, DD, ID
Support
The Compassionate Side of Neuroscience: Tony Sermone's Undiagnosed Genetic Journey-ADNP Mutation.
ASD, ID
Support
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD
Support
Loss-of-function of activity-dependent neuroprotective protein (ADNP) by a splice-acceptor site mutation causes Helsmoortel-Van der Aa syndrome
Helsmoortel-van der Aa syndrome, ASD, DD, ID
Support
A heterozygous microdeletion of 20q13.13 encompassing ADNP gene in a child with Helsmoortel-van der Aa syndrome.
Helsmoortel-Van der Aa syndrome
ID, autistic features
Support
Helsmoortel-Van der Aa syndrome, DD, ID
Autistic features, stereotypy
Support
A Systematic Review Illustrates the Expanding Clinical and Molecular Landscape of Helsmoortel-Van der Aa Syndrome
Helsmoortel-Van der Aa syndrome, ASD
Support
Genome-wide characteristics of de novo mutations in autism
ASD
Support
Exome Sequencing in 200 Intellectual Disability/Autistic Patients: New Candidates and Atypical Presentations
ID
Epilepsy/seizures
Support
Phenotypic and genetic analysis of children with unexplained neurodevelopmental delay and neurodevelopmental comorbidities in a Chinese cohort using trio-based whole-exome sequencing
ASD, DD, ID
Support
Cellular and animal models of skin alterations in the autism-related ADNP syndrome
Helsmoortel-Van der Aa syndrome
ASD, ID
Support
Helsmoortel-van der Aa syndrome, DD
Support
Novel features of Helsmoortel-Van der Aa/ADNP syndrome in a boy with a known pathogenic mutation in the ADNP gene detected by exome sequencing
Helsmoortel-Van der Aa syndrome
DD
Support
Genetic and Phenotype Analysis of a Chinese Cohort of Infants and Children With Epilepsy
Epilepsy/seizures
Support
Genetic variants and phenotypic data curated for the CAGI6 intellectual disability panel challenge
ID
ASD/autistic traits
Support
Large-scale discovery of novel genetic causes of developmental disorders.
ASD, DD, ID
Support
Exome sequencing of 457 autism families recruited online provides evidence for autism risk genes
ASD
Support
Clinical impact and in vitro characterization of ADNP variants in pediatric patients
Helsmoortel-van der Aa syndrome
ASD, DD, ID
Support
Longitudinal ophthalmic findings in a child with Helsmoortel-Van der Aa Syndrome.
Helsmoortel-Van der Aa syndrome
DD, ID
Support
Monogenic defects in Russian children with autism spectrum disorders
ASD
ID, epilepsy/seizures
Support
Meta-analysis of 2,104 trios provides support for 10 new genes for intellectual disability
ID
Support
Whole genome sequencing of 45 Japanese patients with intellectual disability
ASD, DD, ID
Support
ADNP dysregulates methylation and mitochondrial gene expression in the cerebellum of a Helsmoortel-Van der Aa syndrome autopsy case
Helsmoortel-van der Aa syndrome, ASD, DD, epilepsy
Support
Both rare and common genetic variants contribute to autism in the Faroe Islands.
ASD
Support
Further evidence that a blepharophimosis syndrome phenotype is associated with a specific class of mutation in the ADNP gene.
DD
Support
SH3- and actin-binding domains connect ADNP and SHANK3
ASD
Support
The chromatin remodeler ADNP regulates neurodevelopmental disorder risk genes and neocortical neurogenesis
Support
Recurrent de novo mutations implicate novel genes underlying simplex autism risk.
ASD
Support
Impact of on-site clinical genetics consultations on diagnostic rate in children and young adults with autism spectrum disorder.
ASD
Support
Extended phenotypic characterization of a novel Helsmoortel-van der Aa syndrome case series
Helsmoortel-van der Aa syndrome, ASD, DD
Stereotypy
Support
Helsmoortel-Van der Aa Syndrome as emerging clinical diagnosis in intellectually disabled children with autistic traits and ocular involvement.
Helsmoortel-Van der Aa syndrome
Autistic behavior
Support
Distinct Impairments Characterizing Different ADNP Mutants Reveal Aberrant Cytoplasmic-Nuclear Crosstalk
Helsmoortel-van der Aa syndrome
Alzheimer's disease
Support
A frameshift variant in activity-dependent neuroprotective protein (ADNP) causes nucleocytoskeletal alterations in a dizygotic male twin: a case study
Helsmoortel-van der Aa syndrome, ASD, ADHD, DD, ID
Support
Additional data on the clinical phenotype of Helsmoortel-Van der Aa syndrome associated with a novel truncating mutation in ADNP gene.
Helsmoortel-Van der Aa syndrome
ASD, DD, ID
Support
Comprehensive Genetic Analysis of Non-syndromic Autism Spectrum Disorder in Clinical Settings
ASD
Support
Shared and divergent mental health characteristics of ADNP-, CHD8- and DYRK1A-related neurodevelopmental conditions
ASD, ID
Oppositional features
Support
Inherited and multiple de novo mutations in autism/developmental delay risk genes suggest a multifactorial model.
ASD
Support
Whole genome sequencing resource identifies 18 new candidate genes for autism spectrum disorder
ASD
Support
Trio-based exome sequencing reveals a high rate of the de novo variants in intellectual disability
ID
Epilepsy/seizures
Support
ADNP is essential for sex-dependent hippocampal neurogenesis, through male unfolded protein response and female mitochondrial gene regulation
Helsmoortel-van der Aa syndrome
Alzheimer's disease
Support
Challenges and opportunities in the investigation of unexplained intellectual disability using family-based whole-exome sequencing
Helsmoortel-Van der Aa syndrome
ASD, DD, ID
Support
Lessons Learned from Large-Scale, First-Tier Clinical Exome Sequencing in a Highly Consanguineous Population.
ASD, epilepsy/seizures
Support
Clinical Utility of Proband Only Clinical Exome Sequencing in Neurodevelopmental Disorders
ASD, ADHD
Support
Mutation in the ADNP gene associated with Noonan syndrome features
Helsmoortel-Van der Aa syndrome
ASD, DD, ID
Support
Integrating de novo and inherited variants in 42
ASD
ADHD, SCZ, epilepsy/seizures
Support
Genetic diagnostic outcomes from a 10-year research programme in autism in Aotearoa New Zealand
ASD
Support
Comprehensive molecular testing in patients with high functioning autism spectrum disorder.
ASD
Support
Large-scale targeted sequencing identifies risk genes for neurodevelopmental disorders
ASD
DD, ID
Support
Identification of a molecular network regulated by multiple ASD high risk genes
ASD
Support
Genetic Diagnostic Evaluation of Trio-Based Whole Exome Sequencing Among Children With Diagnosed or Suspected Autism Spectrum Disorder.
ASD
DD/ID
Support
DD, ID
Autistic features
Support
Targeted sequencing identifies 91 neurodevelopmental-disorder risk genes with autism and developmental-disability biases.
ASD, DD
Support
Diagnostic yield of next-generation sequencing in 87 families with neurodevelopmental disorders
ID
Support
Genomic insights from a deeply phenotyped highly consanguineous neurodevelopmental disorders cohort
DD, ID
Support
Expansion of the clinical phenotype associated with mutations in activity-dependent neuroprotective protein
Helsmoortel-Van der Aa syndrome
DD, ADHD
Support
Developmental Phenotype of the Rare Case of DJ Caused by a Unique ADNP Gene De Novo Mutation.
ASD, ID, Helsmoortel-van der Aa syndrome
ADHD, behavioral problems
Support
Diagnostic exome sequencing of syndromic epilepsy patients in clinical practice.
DD, ID, epilepsy/seizures
Stereotypic behavior, aggressive behavior
Support
Complex Diagnostics of Non-Specific Intellectual Developmental Disorder
DD, ID
Support
Clinical Application of a Customized Gene Panel for Identifying Autism Spectrum Disorder-Associated Variants
ASD
ID
Support
Targeted DNA Sequencing from Autism Spectrum Disorder Brains Implicates Multiple Genetic Mechanisms.
ASD
Support
ADNP Controls Gene Expression Through Local Chromatin Architecture by Association With BRG1 and CHD4
Support
The genetic landscape of autism spectrum disorder in the Middle Eastern population
ASD
Support
Genome sequencing identifies multiple deleterious variants in autism patients with more severe phenotypes.
ASD
Support
Helsmoortel-van der Aa syndrome, DD
Support
Clinical exome sequencing: results from 2819 samples reflecting 1000 families.
Macrocephaly, white matter abnormalities
Support
Novel ADNP Syndrome Mice Reveal Dramatic Sex-Specific Peripheral Gene Expression With Brain Synaptic and Tau Pathologies
Helsmoortel-van der Aa syndrome
Support
Helsmoortel-Van der Aa syndrome in a 13-year-old girl with autistic spectrum disorder, dysmorphism, a right solitary kidney, and polycystic ovaries: a case report
Helsmoortel-Van der Aa syndrome, ASD, ADHD, DD, ID
Recent Recommendation
Discovery of autism/intellectual disability somatic mutations in Alzheimer's brains: mutated ADNP cytoskeletal impairments and repair as a case study.
AD
Recent Recommendation
A SWI/SNF-related autism syndrome caused by de novo mutations in ADNP.
Autosomal dominant mental retardation-28 (MRD28)
ASD, DD, ID, epilepsy
Recent Recommendation
Clinical Presentation of a Complex Neurodevelopmental Disorder Caused by Mutations in ADNP.
Helsmoortel-Van der Aa syndrome
ASD or autistic features
Recent Recommendation
Low load for disruptive mutations in autism genes and their biased transmission.
ASD
Recent Recommendation
Activity-dependent neuroprotective protein (ADNP) exhibits striking sexual dichotomy impacting on autistic and Alzheimer's pathologies.
Recent Recommendation
CRISPRi-based screen of autism spectrum disorder risk genes in microglia uncovers roles of ADNP in microglia endocytosis and synaptic pruning
ASD
Recent Recommendation
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD
Recent Recommendation
Craniosynostosis
ASD
Recent Recommendation
The NAP motif of activity-dependent neuroprotective protein (ADNP) regulates dendritic spines through microtubule end binding proteins.
Recent Recommendation
Arachnoid cysts
ASD, DD, epilepsy/seizures
Recent Recommendation
The transcriptional regulator ADNP links the BAF (SWI/SNF) complexes with autism.
ASD
ID
GEN471R001
frameshift_variant
c.1222_1223del
p.Lys408ValfsTer31
De novo
Simplex
GEN471R002
frameshift_variant
c.2156_2157insT
p.Glu720ArgfsTer15
De novo
Simplex
GEN471R003
frameshift_variant
c.3280_3281insCC
p.Gly1094AlafsTer5
Familial
Maternal
Simplex
GEN471R004
frameshift_variant
c.2496_2499del
p.Asn832LysfsTer81
De novo
GEN471R005
stop_gained
c.1211C>A
p.Ser404Ter
De novo
GEN471R006
frameshift_variant
c.2153_2165del
p.Thr718ArgfsTer6
De novo
GEN471R007
stop_gained
c.2157C>G
p.Tyr719Ter
De novo
GEN471R008
frameshift_variant
c.2496_2499del
p.Asn832LysfsTer81
De novo
GEN471R009
frameshift_variant
c.2808del
p.Tyr936Ter
De novo
GEN471R010
frameshift_variant
c.2491_2494del
p.Leu831IlefsTer82
De novo
GEN471R011
stop_gained
c.1930C>T
p.Arg644Ter
Unknown
GEN471R012
stop_gained
c.118C>T
p.Gln40Ter
De novo
Simplex
GEN471R013
frameshift_variant
c.642_649del
p.Asn214LysfsTer4
De novo
Simplex
GEN471R014
frameshift_variant
c.2866_2869del
p.Glu956LeufsTer35
De novo
Simplex
GEN471R015
frameshift_variant
c.2318_2319del
p.Lys773IlefsTer14
Unknown
Unknown
GEN471R016
missense_variant
c.1668G>C
p.Gln556His
Unknown
Unknown
GEN471R017
missense_variant
c.1553G>A
p.Arg518His
Unknown
Unknown
GEN471R018
missense_variant
c.2881G>T
p.Asp961Tyr
Unknown
Unknown
GEN471R019
frameshift_variant
c.2497_2500del
p.Lys833SerfsTer80
De novo
Simplex
GEN471R020
frameshift_variant
c.1222_1223del
p.Lys408ValfsTer31
De novo
Simplex
GEN471R021
frameshift_variant
c.2156dup
p.Tyr719Ter
De novo
Simplex
GEN471R022
frameshift_variant
c.2496_2499del
p.Asn832LysfsTer81
De novo
Simplex
GEN471R023
frameshift_variant
c.1046_1047del
p.Leu349ArgfsTer49
De novo
Simplex
GEN471R024
missense_variant
c.3281G>T
p.Gly1094Val
Unknown
Unknown
GEN471R025
missense_variant
c.1327A>G
p.Thr443Ala
Unknown
GEN471R026
stop_gained
c.2188C>T
p.Arg730Ter
De novo
Simplex
GEN471R027
stop_gained
c.2188C>T
p.Arg730Ter
De novo
GEN471R028
frameshift_variant
c.1035_1038del
p.Ser346Ter
De novo
Simplex
GEN471R029
stop_gained
c.632T>A
p.Leu211Ter
De novo
GEN471R030
frameshift_variant
c.3047dup
p.Ala1017GlyfsTer6
Familial
Maternal
GEN471R031
missense_variant
c.2288C>T
p.Ser763Phe
Familial
Maternal
GEN471R032
frameshift_variant
c.2157del
p.Tyr719Ter
De novo
Simplex
GEN471R033
stop_gained
c.3170T>A
p.Leu1057Ter
De novo
Simplex
GEN471R034
frameshift_variant
c.3066_3069del
p.Asp1022GlufsTer4
De novo
GEN471R035
frameshift_variant
c.2491_2494del
p.Leu831IlefsTer82
De novo
GEN471R036
stop_gained
c.2213C>G
p.Ser738Ter
De novo
GEN471R037
stop_gained
c.673C>T
p.Arg225Ter
De novo
GEN471R038
frameshift_variant
c.1035_1038del
p.Ser346Ter
De novo
GEN471R039
stop_gained
c.3170T>A
p.Leu1057Ter
De novo
Simplex
GEN471R040
stop_gained
c.2157C>G
p.Tyr719Ter
De novo
GEN471R041
stop_gained
c.517C>T
p.Arg173Ter
De novo
GEN471R042
frameshift_variant
c.2156dup
p.Tyr719Ter
De novo
GEN471R043
stop_gained
c.2188C>T
p.Arg730Ter
De novo
GEN471R044
stop_gained
c.2157C>G
p.Tyr719Ter
De novo
Simplex
GEN471R045
stop_gained
c.2188C>T
p.Arg730Ter
De novo
Simplex
GEN471R046
stop_gained
c.2157C>G
p.Tyr719Ter
De novo
GEN471R047
copy_number_loss
De novo
Simplex
GEN471R048
frameshift_variant
c.339del
p.Phe114SerfsTer47
Unknown
GEN471R049
frameshift_variant
c.1046_1047del
p.Leu349ArgfsTer49
De novo
GEN471R050
frameshift_variant
c.2287del
p.Ser763ProfsTer9
Unknown
GEN471R051
frameshift_variant
c.287del
p.Val96AlafsTer65
Unknown
GEN471R052
stop_gained
c.1102C>T
p.Gln368Ter
Unknown
GEN471R053
frameshift_variant
c.819del
p.Lys274AsnfsTer31
De novo
GEN471R054
frameshift_variant
c.2496_2499del
p.Asn832LysfsTer81
De novo
GEN471R055
stop_gained
c.2157C>A
p.Tyr719Ter
De novo
GEN471R056
frameshift_variant
c.190dup
p.Thr64AsnfsTer35
De novo
GEN471R057
frameshift_variant
c.2250_2274del
p.Val751MetfsTer13
De novo
GEN471R058
frameshift_variant
c.1026dup
p.Val343CysfsTer56
De novo
Simplex
GEN471R059
frameshift_variant
c.2250_2274del
p.Val751MetfsTer13
De novo
Multiplex
GEN471R060
initiator_codon_variant
c.2T>C
p.Met1?
De novo
Simplex
GEN471R061
frameshift_variant
c.2155del
p.Tyr719ThrfsTer9
Unknown
Not maternal
Simplex
GEN471R062
copy_number_loss
Unknown
Not maternal
Simplex
GEN471R063
frameshift_variant
c.2798_2799del
p.Gly933ValfsTer10
Unknown
Multiplex
GEN471R064
frameshift_variant
c.537dup
p.Val180SerfsTer2
De novo
Simplex
GEN471R065
frameshift_variant
c.10C>G
p.Leu4Val
Unknown
Unknown
GEN471R066
frameshift_variant
c.2499del
p.Val834SerfsTer80
De novo
Simplex
GEN471R067
stop_gained
c.517C>T
p.Arg173Ter
De novo
Simplex
GEN471R068
frameshift_variant
c.2251_2275del
p.Val751MetfsTer13
De novo
GEN471R069
stop_gained
c.2261T>G
p.Leu754Ter
De novo
Simplex
GEN471R070
stop_gained
c.3170T>A
p.Leu1057Ter
De novo
Simplex
GEN471R071
frameshift_variant
c.1026dup
p.Val343CysfsTer56
De novo
Simplex
GEN471R072
frameshift_variant
c.1222_1223del
p.Lys408ValfsTer31
De novo
Simplex
GEN471R073
frameshift_variant
c.2424_2427del
p.Lys809SerfsTer19
De novo
Simplex
GEN471R074
frameshift_variant
c.2287dup
p.Ser763PhefsTer3
De novo
Simplex
GEN471R075
missense_variant
c.746A>G
p.Tyr249Cys
De novo
Simplex
GEN471R076
frameshift_variant
c.2496_2499del
p.Asn832LysfsTer81
De novo
GEN471R077
stop_gained
c.2157C>G
p.Tyr719Ter
De novo
Simplex
GEN471R078
frameshift_variant
c.2491_2494del
p.Leu831IlefsTer82
De novo
GEN471R079
stop_gained
c.2157C>G
p.Tyr719Ter
De novo
GEN471R080
frameshift_variant
c.651_655del
p.Glu218Ter
De novo
Simplex
GEN471R081
frameshift_variant
c.2156dup
p.Tyr719Ter
Unknown
GEN471R082
frameshift_variant
c.103dup
p.Ile35AsnfsTer5
Unknown
GEN471R083
frameshift_variant
c.2287del
p.Ser763ProfsTer9
De novo
GEN471R084
stop_gained
c.2157C>G
p.Tyr719Ter
De novo
GEN471R085
stop_gained
c.2157C>A
p.Tyr719Ter
De novo
GEN471R086
stop_gained
c.2157C>A
p.Tyr719Ter
De novo
GEN471R087
frameshift_variant
c.1046_1047del
p.Leu349ArgfsTer49
De novo
GEN471R088
frameshift_variant
c.853_857del
p.Pro285AspfsTer27
De novo
GEN471R089
frameshift_variant
c.539_542del
p.Val180GlyfsTer17
De novo
GEN471R090
frameshift_variant
c.539_542del
p.Val180GlyfsTer17
De novo
GEN471R091
frameshift_variant
c.361_362del
p.Leu121GlyfsTer5
De novo
GEN471R092
frameshift_variant
c.334_335insA
p.Cys112Ter
De novo
GEN471R093
missense_variant
c.1568A>C
p.Asp523Ala
De novo
GEN471R094
missense_variant
c.1540T>G
p.Cys514Gly
De novo
GEN471R095
missense_variant
c.1535T>G
p.Leu512Arg
De novo
GEN471R096
missense_variant
c.253T>C
p.Phe85Leu
De novo
GEN471R097
frameshift_variant
c.819del
p.Lys274AsnfsTer31
De novo
GEN471R098
frameshift_variant
c.190dup
p.Thr64AsnfsTer35
De novo
GEN471R099
stop_gained
c.1102C>T
p.Gln368Ter
De novo
GEN471R100
frameshift_variant
c.2496_2499del
p.Asn832LysfsTer81
De novo
GEN471R101
stop_gained
c.2157C>A
p.Tyr719Ter
De novo
GEN471R102
frameshift_variant
c.3047dup
p.Ala1017GlyfsTer6
Familial
Maternal
GEN471R103
frameshift_variant
c.3047dup
p.Ala1017GlyfsTer6
Familial
Maternal
GEN471R104
stop_gained
c.2157C>A
p.Tyr719Ter
Unknown
GEN471R105
frameshift_variant
c.2318dup
p.Tyr774ValfsTer14
Unknown
GEN471R106
stop_gained
c.2382G>A
p.Trp794Ter
Unknown
GEN471R107
stop_gained
c.2188C>T
p.Arg730Ter
Unknown
GEN471R108
stop_gained
c.893T>G
p.Leu298Ter
Unknown
GEN471R109
frameshift_variant
c.1402_1403del
p.Glu468ThrfsTer2
Unknown
GEN471R110
frameshift_variant
c.1287dup
p.Ala430CysfsTer10
Unknown
GEN471R111
frameshift_variant
c.1046_1047del
p.Leu349ArgfsTer49
Unknown
GEN471R112
frameshift_variant
c.339del
p.Phe114SerfsTer47
Unknown
GEN471R113
stop_gained
c.2157C>G
p.Tyr719Ter
Unknown
GEN471R114
frameshift_variant
c.287del
p.Val96AlafsTer65
Unknown
GEN471R115
missense_variant
c.110A>T
p.Asp37Val
Unknown
GEN471R116
frameshift_variant
c.2491_2494del
p.Leu831IlefsTer82
De novo
GEN471R117
frameshift_variant
c.2194_2197del
p.Leu732MetfsTer20
Unknown
GEN471R118
frameshift_variant
c.2231del
p.Glu744GlyfsTer9
Unknown
GEN471R119
stop_gained
c.1930C>T
p.Arg644Ter
Unknown
GEN471R120
frameshift_variant
c.2156dup
p.Tyr719Ter
Unknown
GEN471R121
frameshift_variant
c.3047dup
p.Ala1017GlyfsTer6
Unknown
GEN471R122
missense_variant
c.1931G>A
p.Arg644Gln
Unknown
GEN471R123
frameshift_variant
c.1713dup
p.Arg572GlufsTer6
Unknown
GEN471R124
frameshift_variant
c.2156dup
p.Tyr719Ter
Unknown
GEN471R125
missense_variant
c.2126C>T
p.Ser709Phe
Familial
Maternal
GEN471R126
missense_variant
c.2772G>C
p.Glu924Asp
Familial
Paternal
GEN471R127
missense_variant
c.3127G>T
p.Asp1043Tyr
Familial
Maternal
GEN471R128
frameshift_variant
c.642_651del
p.Asn214LysfsTer31
De novo
Simplex
GEN471R129
frameshift_variant
c.2314dup
p.Thr772AsnfsTer16
Unknown
GEN471R130
frameshift_variant
c.2317_2318del
p.Lys773ValfsTer14
Unknown
GEN471R131
stop_gained
c.1792C>T
p.Gln598Ter
De novo
Simplex
GEN471R132
stop_gained
c.2188C>T
p.Arg730Ter
De novo
GEN471R133
stop_gained
c.2157C>A
p.Tyr719Ter
De novo
GEN471R134
stop_gained
c.2188C>T
p.Arg730Ter
De novo
GEN471R135
frameshift_variant
c.3071_3072del
p.Glu1024AlafsTer7
Unknown
GEN471R136
frameshift_variant
c.2496_2499del
p.Asn832LysfsTer81
De novo
GEN471R137
missense_variant
c.3281G>A
p.Gly1094Glu
De novo
GEN471R138
frameshift_variant
c.2155del
p.Tyr719ThrfsTer9
De novo
Simplex
GEN471R139
stop_gained
c.790C>T
p.Arg264Ter
Unknown
Unknown
GEN471R140
stop_gained
c.2157C>A
p.Tyr719Ter
De novo
GEN471R141
synonymous_variant
c.1917T>C
p.Leu639=
De novo
GEN471R142
stop_gained
c.2188C>T
p.Arg730Ter
De novo
GEN471R143
missense_variant
c.1594C>T
p.Arg532Trp
De novo
GEN471R144
stop_gained
c.1102C>T
p.Gln368Ter
De novo
GEN471R145
missense_variant
c.715C>G
p.His239Asp
De novo
GEN471R146
frameshift_variant
c.3136_3137del
p.Gln1046ValfsTer6
Unknown
GEN471R147
frameshift_variant
c.3069_3072del
p.Arg1023SerfsTer3
Unknown
GEN471R148
frameshift_variant
c.3047dup
p.Ala1017GlyfsTer6
Unknown
GEN471R149
frameshift_variant
c.2825_2828del
p.Thr942ArgfsTer6
Unknown
GEN471R150
frameshift_variant
c.2457del
p.Lys819AsnfsTer10
Unknown
GEN471R151
frameshift_variant
c.2421_2422del
p.Arg808GlufsTer6
Unknown
GEN471R152
stop_gained
c.2157C>G
p.Tyr719Ter
Unknown
GEN471R153
frameshift_variant
c.1239_1240del
p.Gln414ValfsTer25
Unknown
GEN471R154
frameshift_variant
c.1239_1240del
p.Gln414ValfsTer25
Unknown
GEN471R155
frameshift_variant
c.1049dup
p.Leu351SerfsTer48
Unknown
GEN471R156
frameshift_variant
c.1004_1005del
p.Lys335IlefsTer63
Unknown
GEN471R157
stop_gained
c.484C>T
p.Gln162Ter
Unknown
GEN471R158
frameshift_variant
c.539_542del
p.Val180GlyfsTer17
Unknown
GEN471R159
frameshift_variant
c.539_542del
p.Val180GlyfsTer17
De novo
GEN471R160
stop_gained
c.2213C>A
p.Ser738Ter
De novo
GEN471R161
inversion
c.-89-3923_201+2793inv
De novo
Simplex
GEN471R162
missense_variant
c.1084C>G
p.Gln362Glu
De novo
GEN471R163
stop_gained
c.2712dup
p.Asn905Ter
Familial
GEN471R164
frameshift_variant
c.2491_2494del
p.Leu831IlefsTer82
De novo
GEN471R165
frameshift_variant
c.2194_2197del
p.Leu732MetfsTer20
De novo
GEN471R166
stop_gained
c.2156dup
p.Tyr719Ter
De novo
GEN471R167
stop_gained
c.568C>T
p.Gln190Ter
De novo
GEN471R168
frameshift_variant
c.2496_2499del
p.Asn832LysfsTer81
De novo
Simplex
GEN471R169
frameshift_variant
c.3047_3048insA
p.Ala1017GlyfsTer6
Familial
Maternal
Multiplex
GEN471R170
missense_variant
c.311A>G
p.Lys104Arg
Unknown
GEN471R171
stop_gained
c.2157C>G
p.Tyr719Ter
De novo
GEN471R172
stop_gained
c.2157C>G
p.Tyr719Ter
De novo
GEN471R173
stop_gained
c.2157C>G
p.Tyr719Ter
De novo
GEN471R174
stop_gained
c.2157del
p.Tyr719Ter
De novo
GEN471R175
frameshift_variant
c.2496_2499del
p.Asn832LysfsTer81
De novo
GEN471R176
frameshift_variant
c.2496_2499del
p.Asn832LysfsTer81
De novo
GEN471R177
frameshift_variant
c.2496_2499del
p.Asn832LysfsTer81
De novo
GEN471R178
stop_gained
c.2188C>T
p.Arg730Ter
De novo
GEN471R179
stop_gained
c.2188C>T
p.Arg730Ter
De novo
GEN471R180
frameshift_variant
c.2222dup
p.Phe742LeufsTer2
De novo
GEN471R181
frameshift_variant
c.2189del
p.Arg730GlnfsTer3
De novo
GEN471R182
stop_gained
c.673C>T
p.Arg225Ter
De novo
GEN471R183
frameshift_variant
c.2491_2494del
p.Leu831IlefsTer82
De novo
GEN471R184
frameshift_variant
c.319del
p.Asn108IlefsTer53
De novo
GEN471R185
splice_site_variant
c.-5-1_-4del
De novo
GEN471R186
frameshift_variant
c.294_295del
p.Ser98ArgfsTer4
Unknown
GEN471R187
stop_gained
c.1360G>T
p.Glu454Ter
Unknown
GEN471R188
frameshift_variant
c.64dup
p.Ile22AsnfsTer3
De novo
Simplex
GEN471R189
stop_gained
c.498_499del
p.Tyr166Ter
De novo
Simplex
GEN471R190
stop_gained
c.673C>T
p.Arg225Ter
De novo
GEN471R191
missense_variant
c.2059T>C
p.Cys687Arg
De novo
Simplex
GEN471R192
stop_gained
c.2157C>A
p.Tyr719Ter
De novo
GEN471R193
stop_gained
c.2157C>A
p.Tyr719Ter
Unknown
GEN471R194
stop_gained
c.2157C>G
p.Tyr719Ter
De novo
Simplex
GEN471R195
stop_gained
c.2157C>G
p.Tyr719Ter
De novo
Simplex
GEN471R196
missense_variant
c.2188C>G
p.Arg730Gly
De novo
Simplex
GEN471R197
stop_gained
c.2188C>T
p.Arg730Ter
De novo
Simplex
GEN471R198
stop_gained
c.2188C>T
p.Arg730Ter
De novo
Simplex
GEN471R199
stop_gained
c.2188C>T
p.Arg730Ter
De novo
Simplex
GEN471R200
frameshift_variant
c.2289del
p.Tyr764MetfsTer8
Unknown
GEN471R201
frameshift_variant
c.2355_2356del
p.Glu785AspfsTer2
De novo
GEN471R202
frameshift_variant
c.2491_2494del
p.Leu831IlefsTer82
De novo
Simplex
GEN471R203
stop_gained
c.2157C>A
p.Tyr719Ter
De novo
Simplex
GEN471R204
frameshift_variant
c.1676dup
p.His559GlnfsTer3
De novo
GEN471R205
inframe_deletion
c.370_381del
p.His124_Ile127del
De novo
Simplex
GEN471R206
frameshift_variant
c.1265dup
p.Gln423SerfsTer17
De novo
GEN471R207
stop_gained
c.2188C>T
p.Arg730Ter
Unknown
GEN471R208
stop_gained
c.2156dupA
p.Tyr719Ter
De novo
GEN471R209
missense_variant
c.2473G>C
p.Gly825Arg
De novo
Simplex
GEN471R210
frameshift_variant
c.2232_2236del
p.Glu744AspfsTer2
Unknown
Simplex
GEN471R211
frameshift_variant
c.539_542del
p.Val180GlyfsTer17
De novo
Simplex
GEN471R212
missense_variant
c.2667T>A
p.Ser889Arg
Familial
Maternal
GEN471R213
frameshift_variant
c.14del
p.Pro5LeufsTer8
De novo
Simplex
GEN471R214
missense_variant
c.3205A>G
p.Ile1069Val
Unknown
GEN471R215
missense_variant
c.2782G>C
p.Asp928His
Unknown
GEN471R216
inframe_deletion
c.2653_2655del
p.Glu885del
Unknown
GEN471R217
missense_variant
c.1490A>G
p.Tyr497Cys
De novo
GEN471R218
frameshift_variant
c.1046_1047delTG
p.Leu349ArgfsTer49
De novo
Simplex
GEN471R219
stop_gained
c.2157C>G
p.Tyr719Ter
De novo
No Common Variants Available
20
Deletion-Duplication
14
20
Deletion-Duplication
1
Summary Statistics:
# of Reports: 10
# of Models: 17
External Links
Rescue Type:
RESCUE-Pharmaceutical
Rescue Paradigm:
Adnp het mice (5 months) were injected (i.p.) with 10ug/0.3 ml saline of SKIP- a four amino acid peptide derived from NAP that binds EB1/EB3 proteins (microtubule end binding proteins), prior to analysis in manganese enhanced MRI (MEMRI), these mice and the control group also inhaled 4 ul of 0.5 n manganese chloride solution (in PBS) through EACH nostril for preparation for MEMRI.
Cytoskeletal organization: neuronal: axonal transport1
Restored
View More
Description: Retrograde axonal transport in the lateral part of olfactory nerve and glomerular layer is normalized in adnp mice pretreated with skip
Exp Paradigm: Males and females
Manganese-enhanced magnetic resonance imaging (memri)
5 months
Not Reported:
Circadian sleep/wake cycle, Communications, Developmental profile, Emotion, Immune response, Learning & memory, Maternal behavior, Molecular profile, Motor phenotype, Neuroanatomy / ultrastructure / cytoarchitecture, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior
Decreased
View More
Description: Adnp het mice have longer latencies in finding the visible platform than their wt, even though they do learn to find it in 60 s
Exp Paradigm: NA
Morris water maze test
2 months
Increased
View More
Description: For this phenotype only the astrocyte form and structure were considered to count abnormal looking astrocytes (thorn shaped, swollen) was higher in 10-11 month old adnp het mice compared to age matched controls
Exp Paradigm: NA
Immunohistochemistry
10-11 months
Cytoskeletal organization: neuronal: axonal transport2
Decreased
View More
Description: Retrograde axonal transport in the lateral part of olfactory nerve and glomerular layer is reduced in adnp mice, assessed by the signal intensity in memri
Exp Paradigm: Males and females
Manganese-enhanced magnetic resonance imaging (memri)
5 months
Social interaction: opposite sex1
Decreased
View More
Description: Adnp het male mice show reduced preference for an unfamiliar 18 month old female mouse, once they have interacted with another female mouse over 6 trials (separated by 30 min) on the same day.
Exp Paradigm: NA
Reciprocal social interaction test
Unreported
Decreased
View More
Description: Adnp het male mice show reduce social memory as they have long imes of ineractions, sniffing etc, with a female mouse over 6 trials whereas wt male mice reduce the time of interaction over that period
Exp Paradigm: NA
Reciprocal social interaction test
Unreported
Decreased
View More
Description: Adnp het male and female mice show no preference towards novel unfamiliar mouse over familiar mouse, unlike controls
Exp Paradigm: Males and females
Three-chamber social approach test
8 months
Developmental trajectory1
Decreased
View More
Description: Adnp het mice show some developmental delay during embryogenesis
Exp Paradigm: NA
Histology
E9-15
Decreased
View More
Description: Adnp het mice show reduced short term working memory in the second test trials conducted, showing increased latency to find the hidden platform again (see exp paradigm details) and they also do not learn the task by the 3rd day of testing, unlike wt controls
Exp Paradigm: A pair of trials are conducted everyday for 5 days. the platform and start position of the mouse are kept constant on the same day over the paired trials, but changed every day. at first, the mouse was placed for 0.5 min on the platform and then placed in the water and the latency to reach the platform was measured (first test). this was repeated (second test) once the mouse found the platform ( it was allowed to remain on the platform for 0.5 min again before being placed in the water).
Morris water maze test
2, 9 months
Spatial reference memory1
Decreased
View More
Description: Adnp het mice take longer to find the hidden platform on the first trial in the hidden platform test of morris water maze, testing reference memory ( stated by the authors).
Exp Paradigm: A pair of trials are conducted everyday for 5 days. the platform and start position of the mouse are kept constant on the same day over the paired trials, but changed every day. at first, the mouse was placed for 0.5 min on the platform and then placed in the water and the latency to reach the platform was measured (first test). this was repeated once the mouse found the platform ( it was allowed to remain on the platform for 0.5 min again before being placed in the water).
Morris water maze test
2, 9 months
Protein expression: in situ protein expression2
Increased
View More
Description: Number of cells expressing slc6a4 in the hippocampal ca1 is significantly increased in male adnp het mice only, compared to male adnp controls
Exp Paradigm: Males only
Immunohistochemistry
9 months
Increased
View More
Description: There was a significant increase in the active form of gsk3/, phosphorylated at tyr279/216 at 9 months of age. at 2 months the active form was increased but did not reach significance.
Exp Paradigm: NA
Western blot
2, 9 months
Protein expression: in situ protein expression2
Decreased
View More
Description: Number of cells expressing beclin1 (becn1) in the hippocampus is significantly reduced in female adnp het mice only, compared to female adnp controls
Exp Paradigm: Females only
Immunohistochemistry
9 months
Decreased
View More
Description: There was a 42% decrease in adnp mrna in the adnp het mice brain cortex, 38% reduction in the cerebellum and 50% reduction in the hippocampus
Exp Paradigm: Western blot: adnp protein
Western blot
2, 9 months
Protein expression: in situ protein expression2
Decreased
View More
Description: Number of cells expressing voltage dependent calcium channel (vdcc), cacnb1 in the hippocampus is significantly reduced in male adnp het mice only, compared to male adnp controls
Exp Paradigm: Males only
Immunohistochemistry
9 months
Decreased
View More
Description: There was a 42% decrease in adnp mrna in the adnp het mice brain cortex, 38% reduction in the cerebellum and 50% reduction in the hippocampus
Exp Paradigm: Quantitative pcr (qrt-pcr)
Quantitative pcr (qrt-pcr)
2, 9 months
Protein expression: in situ protein expression2
Increased
View More
Description: Number of cells expressing vdcc, cacnb1, in the hippocampus is significantly increased in female adnp het mice only, compared to female adnp controls
Exp Paradigm: Females only
Immunohistochemistry
9 months
Increased
View More
Description: There was an increase in phosphorylated tau protein in adnp het mice compared to wt controls.
Exp Paradigm: NA
Western blot
2, 9 months
No change
General observations
0-9 weeks
Olfactory learning and memory2
No change
Olfactory habituation-dishabituation test
8 months
General locomotor activity1
No change
Open field test
2 months
No change
Morris water maze test
9 months
No change
Three-chamber social approach test
8 months
Not Reported:
Circadian sleep/wake cycle, Communications, Developmental profile, Emotion, Immune response, Maternal behavior, Motor phenotype, Neuroanatomy / ultrastructure / cytoarchitecture, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Sensory
Summary Statistics:
Total Interactions: 51
Total Publications: 21
Show all nodes
Hide non-ASD
Interactor Symbol
Interactor Name
Interactor Organism
Entrez ID
Uniprot ID
Interaction Type
Evidence
Reference
2-Sep
septin 2
4735
Q15019
LC-MS/MS
Havugimana PC , et al. 2012
ADNP
activity-dependent neuroprotector homeobox
23394
Q9H2P0
ChIP
Aboonq MS , et al. 2011
ARID1A
AT rich interactive domain 1A (SWI-like)
8289
O14497
IP/WB
Mandel S and Gozes I 2007
CBX1
chromobox homolog 1
10951
P83916
in vitro binding assay; Co-localization
MS; IP/WB
Rosnoblet C , et al. 2011
CBX3
chromobox homolog 3
11335
Q13185
in vitro binding assay; Co-localization
MS; IP/WB
Rosnoblet C , et al. 2011
CBX5
chromobox homolog 5
23468
Q61686
in vitro binding assay
MS; IP/WB
Rosnoblet C , et al. 2011
CDC27
cell division cycle 27
996
G3V1C4
Y2H
Wang J , et al. 2011
CHD8
chromodomain helicase DNA binding protein 8
57680
Q9HCK8
ChIP-chip
Subtil-Rodrguez A , et al. 2013
EB1
Microtubule-associated protein RP/EB family member 1
22919
Q15691
in silico target prediction
Oz S , et al. 2014
EB2
Microtubule-associated protein RP/EB family member 2
10982
Q15555
in silico target prediction
Oz S , et al. 2014
EB3
Microtubule-associated protein RP/EB family member 3
22924
Q9UPY8
in silico target prediction
Oz S , et al. 2014
EBNA1BP2
EBNA1 binding protein 2
10969
H7C2Q8
LC-MS/MS
Havugimana PC , et al. 2012
EMD
emerin
2010
P50402
LC-MS/MS
Havugimana PC , et al. 2012
H3F3A
H3 histone, family 3A
3020
P84243
in vitro binding assay; IP; LC-MS/MS; IP/WB; Co-localization
Mosch K , et al. 2011
HDAC1
histone deacetylase 1
3065
Q13547
LC-MS/MS
Joshi P , et al. 2013
HDAC11
histone deacetylase 11
79885
Q96DB2
LC-MS/MS
Joshi P , et al. 2013
HDAC7
histone deacetylase 7
51564
Q8WUI4
IP; LC-MS/MS
Huttlin EL , et al. 2015
MAP1LC3B
microtubule-associated protein 1 light chain 3 beta
81631
Q9GZQ8
IP/WB
Y2H
Vinayagam A , et al. 2011
MAPRE1
microtubule-associated protein, RP/EB family, member 1
22919
Q15691
in vitro binding assay; IP/WB
Oz S , et al. 2014
MAPRE3
microtubule-associated protein, RP/EB family, member 3
22924
Q9UPY8
in vitro binding assay; IP/WB
Oz S , et al. 2014
MYC
v-myc myelocytomatosis viral oncogene homolog (avian)
4609
P01106
Size-exclusion chromatography (SEC); MS
Agrawal P , et al. 2010
NCAPH2
non-SMC condensin II complex, subunit H2
29781
Q6IBW4
IP; LC-MS/MS
Huttlin EL , et al. 2015
NFIA
nuclear factor I/A
4774
Q12857
LC-MS/MS
Havugimana PC , et al. 2012
PHGDH
phosphoglycerate dehydrogenase
26227
O43175
LC-MS/MS
Havugimana PC , et al. 2012
POLG2
polymerase (DNA directed), gamma 2, accessory subunit
NM_007215
E5KS15
IP; LC-MS/MS
Huttlin EL , et al. 2015
QPRT
Nicotinate-nucleotide pyrophosphorylase [carboxylating]
23475
Q15274
IP; LC-MS/MS
Huttlin EL , et al. 2015
RRS1
RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)
23212
Q15050
LC-MS/MS
Havugimana PC , et al. 2012
SAP18
Sin3A-associated protein, 18kDa
10284
O00422
LC-MS/MS
Havugimana PC , et al. 2012
SIRT7
sirtuin 7
51547
Q9NRC8
LC-MS/MS
Tsai YC , et al. 2012
SMARCA4
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
6597
A7E2E1
IP/WB
Mandel S and Gozes I 2007
SMARCC2
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2
6601
Q8TAQ2
IP/WB
Mandel S and Gozes I 2007
SUMO2
SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae)
6613
P61956
LC-MS/MS
Bruderer R , et al. 2011
TOP3B
topoisomerase (DNA) III beta
8940
O95985
IP/WB
Xu D , et al. 2013
UBC
ubiquitin C
7316
P63279
LC-MS/MS
Danielsen JM , et al. 2010
ZNF524
Zinc finger protein 524
147807
Q96C55
IP; LC-MS/MS
Huttlin EL , et al. 2015
ZNF581
zinc finger protein 581
51545
Q9P0T4
IP; LC-MS/MS
Huttlin EL , et al. 2015
ZSCAN20
zinc finger and SCAN domain containing 20
7579
P17040
IP; LC-MS/MS
Huttlin EL , et al. 2015
APOE
apolipoprotein E
11816
P08226
IP/WB
Mandel S , et al. 2007
CTSC
cathepsin C
13032
P97821
IP/WB
Mandel S , et al. 2007
CTSZ
cathepsin Z
64138
Q9WUU7
IP/WB
Mandel S , et al. 2007
FMR1
fragile X mental retardation 1
14265
P35922
HITS-CLIP
Darnell JC , et al. 2011
HBB
hemoglobin, beta adult major chain
15129
P02088
ChIP
Dresner E , et al. 2012
Mapre2
microtubule-associated protein, RP/EB family, member 2
212307
Q8R001
IP/WB
Oz S , et al. 2014
MTNR1A
melatonin receptor 1A
17773
Q61184
IP/WB
Mandel S , et al. 2007
MYL2
myosin, light polypeptide 2, regulatory, cardiac, slow
17906
P51667
IP/WB
Mandel S , et al. 2007
NEUROG1
neurogenin 1
18014
P70660
IP/WB
Mandel S , et al. 2007
Rbfox1
RNA binding protein, fox-1 homolog (C. elegans) 1
268859
Q9JJ43
HITS-CLIP
Weyn-Vanhentenryck SM , et al. 2014
Sfpq
splicing factor proline/glutamine-rich
71514
Q8VIJ6
IP/WB
Schirer Y , et al. 2014
Smarca2
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
67155
Q6DIC0
IP/WB
Schirer Y , et al. 2014
Srcin1
SRC kinase signaling inhibitor 1
56013
Q9QWI6
IP/WB
Oz S , et al. 2014
Tubb2a
tubulin, beta 2A class IIA
22151
Q7TMM9
IP/WB
Oz S , et al. 2014